HHsearch 1.5 NAME c4uer9_ FAM FILE c4uer9_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4uer9_.a3m DATE Sat Feb 14 08:24:20 2015 LENG 71 match states, 71 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.1 EVD 0.3928 -1.1779 SEQ >ss_dssp CCCCCCCSCCCCCCCCCCCCCCCCSEECSSSCEECCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEECC >sa_dssp EEEEEDEEEEEEEEEEEEDEEEEEDEEDEEEEEDEDDECBECEEAEDDCCBDEEEEDBCADEBEDDEEDEE >ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEEC >ss_conf 96421221111111111113455688868973876000088976666469613644221455303688739 >Consensus xxxxxxxxxxxxxxxxxxxxVLkyYKVDxnGKVxRlRkeCPnxxCGxGvFMAxHxDRxyCGKChltYkxna >c4uer9_ XXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVNA >UniRef50_Q6A1P6(102-150:177) Putative uncharacterized protein n=1 Tax=Euplotes vannus RepID=Q6A1P6_EUPVA E=7e-12 s/c=1.46 id=51% cov=69% --------------------VLSYFEVDKNGKIEKLKQESPEQ---AGCYLADHKDRMHCGKTgYMFYKMTA >UniRef50_Q98S99(70-112:115) 40S ribosomal protein S27A n=1 Tax=Guillardia theta RepID=Q98S99_GUITH E=9e-07 s/c=1.27 id=46% cov=55% --------------------VLSYYHLDQN-KITRILKESPDS---PGCFMANHFNRITCGK--------- >UniRef50_UPI00006CAF49(98-145:189) Ribosomal protein S27a containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF49 E=6e-15 s/c=1.71 id=47% cov=69% ---------------------LAFYKLENNGKVSLQQKGCP--KCGPGIFMAKHYDRHYCGKCHLTLKIDA >UniRef50_Q8IM64(102-145:149) 40S ribosomal protein S31/UBI, putative n=7 Tax=Plasmodium RepID=Q8IM64_PLAF7 E=2e-13 s/c=1.75 id=53% cov=61% --------------------VLKFYKVGDDGKVFRLKRQCDN--CAPGTLMASHFDRDYCGRCH------- >UniRef50_A6US53(20-64:71) 30S ribosomal protein S27ae n=13 Tax=Euryarchaeota RepID=RS27A_METVS E=4e-08 s/c=1.32 id=51% cov=63% -----------------------YYKVEGN-SVTRTKKACP--KCGAGVFMAEHLNRYACGKCGfLEYKKN- >UniRef50_A8BNY1(95-134:137) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BNY1_GIALA E=2e-07 s/c=1.42 id=40% cov=56% ---------------------LKYYTIKGD-TAEPTREYCPN--CGPGIRIARHADRCHCGRC-------- >UniRef50_D1HQI3(77-110:113) Whole genome shotgun sequence of line PN40024, scaffold_144.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HQI3_VITVI E=8e-07 s/c=1.61 id=45% cov=46% -----------------------------------LRRDCLDSECCVGTFMASHLDRHYYAKCSLAY---- >UniRef50_UPI0000DC1016(99-140:145) UPI0000DC1016 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DC1016 E=2e-10 s/c=1.58 id=42% cov=61% --------------------VLKYYEVDKNGKIKNVLLM--------NVVMGSHFDRHYYGKCCPTYWFN- >UniRef50_D2EF30(11-53:61) Ribosomal protein S27a n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EF30_9EURY E=0.0002 s/c=1.10 id=46% cov=52% ------------------------YKIEGS-TITKVNHTCP--KCGEGTFLAEHNNRLTCGRC-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 X 2 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 2 * * * * * * * 0 0 0 X 3 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 3 * * * * * * * 0 0 0 X 4 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 4 * * * * * * * 0 0 0 X 5 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 5 * * * * * * * 0 0 0 X 6 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 6 * * * * * * * 0 0 0 X 7 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 7 * * * * * * * 0 0 0 X 8 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 8 * * * * * * * 0 0 0 X 9 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 9 * * * * * * * 0 0 0 X 10 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 10 * * * * * * * 0 0 0 X 11 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 11 * * * * * * * 0 0 0 X 12 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 12 * * * * * * * 0 0 0 X 13 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 13 * * * * * * * 0 0 0 X 14 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 14 * * * * * * * 0 0 0 X 15 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 15 * * * * * * * 0 0 0 X 16 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 16 * * * * * * * 0 0 0 X 17 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 17 * * * * * * * 0 0 0 X 18 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 18 * * * * * * * 0 0 0 X 19 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 19 * * * * * * * 0 0 0 X 20 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 20 * * * * * * * 0 0 0 V 21 * * * * * * * * * * * * * * * * * 0 * * 21 0 * * * * * * 2508 0 0 L 22 * * * * * * * * * 182 * * * * * 4159 * * * 4006 22 0 * * * * * * 2866 0 0 S 23 3058 * * * * * * * 1061 * * 4530 * 4746 3149 2816 3932 * * * 23 0 * * * * * * 2866 0 0 Y 24 * * * * 1985 * 2515 * * * * * * * * * * * * 805 24 0 * * * * * * 2932 0 0 Y 25 * * * * 2954 * 3953 * * * * * * * * * * * * 310 25 0 * * * * * * 2994 0 0 K 26 * * * 2991 * * 4633 * 726 * * 4259 * * 4595 4963 3270 * * * 26 0 * * * * * * 3043 0 0 V 27 * * * * * * * 2281 * 3612 * * * * * * * 489 * * 27 61 4598 * 2000 415 * * 3043 1000 0 D 28 * * 619 2657 * 4479 * * 3424 * * * * * * * 4259 * * * 28 106 * 3822 * * * * 3043 0 0 A 29 3681 * 3446 2194 * 1543 * * 3319 * * 4488 * 4437 * 3686 * * * * 29 66 4478 * 0 * 0 * 3008 1000 1339 E 30 4561 * 1626 4196 * * 4322 * * * 4732 1520 * 4652 * 3278 * * * * 30 427 * 1964 * * * * 3102 0 0 G 31 * * * * 4309 75 * * * * * * * * * * * * * * 31 0 * * * * 0 * 2827 0 2354 K 32 * * * * * * * * 281 * * * * * * 3500 3500 * * * 32 0 * * * * * * 3100 0 0 V 33 3426 * * * * * * 1425 * * * * * * * * 4916 996 * * 33 73 * 4339 * * * * 3100 0 0 T 34 * * * 1816 4713 * 4337 4519 3561 * * * * 5303 * 2761 2307 3001 * * 34 0 * * * * 0 * 3059 0 1000 K 35 4892 * * * * * 4339 * 2722 5083 * 4302 3560 * 831 * 4714 * * * 35 0 * * * * * * 3100 0 0 L 36 * * * * * * * 4009 3819 1026 * * * 3474 4172 4731 3091 3726 * * 36 0 * * * * * * 3127 0 0 R 37 * 4172 * * * 5064 4731 * 2705 3310 * 4207 * 5107 890 * * * * * 37 0 * * * * * * 3127 0 0 R 38 * * 4684 4195 * * 3935 * 1465 3668 * * * 3928 1841 * * * 4172 * 38 0 * * * * * * 3127 0 0 E 39 4022 4642 3792 1204 4609 5107 * 4943 * * 3668 * * 4803 * 5064 4221 4752 * 4195 39 63 * 4549 * * * * 3127 0 0 C 40 * 236 * * * * * * * * * * * * 4094 3433 * * * * 40 130 * 3533 * * * 0 3025 0 1000 S 41 4454 * 4693 5016 * * * * * 4301 * * 718 4976 * 3298 3431 * * * 41 323 * 2318 * * * 0 3088 0 1774 N 42 * * 3430 4348 * 3290 4459 * * * * 1227 * 3644 4278 2721 * * * * 42 444 * 1915 * * 1780 497 2861 0 2178 P 43 4264 * 2935 2557 * * * * 3970 * * * 1491 3944 * 2620 * * * * 43 239 * 2709 * * 1136 875 2729 0 2563 T 44 * * * 1960 * * * * 2271 * * 4313 * 4268 2046 3270 4228 4862 * * 44 0 * * * * 1422 674 2647 0 2535 C 45 * 0 * * * * * * * * * * * * * * * * * * 45 54 4771 * 0 * 1631 562 2605 1000 2115 G 46 4796 2595 4721 * * 449 * * * * * * * * * 5154 * * * * 46 0 * * * * 394 2065 2928 0 1813 A 47 1530 * 5101 4334 * 5095 * * 3064 * * 4566 2269 * 4760 * * 2842 * * 47 0 * * * * 0 * 3124 0 1000 G 48 4631 * * * * 124 * * * * * 4566 * * * * * * * * 48 93 * 3996 * * * * 3168 0 0 V 49 4917 2479 * * 5249 * * 3646 * * * * * * * 5147 2424 1099 * * 49 0 * * * * * 0 2987 0 1000 F 50 * * * * 520 * * * * 3888 * * * * 4261 * * 3549 * 3356 50 0 * * * * * 0 2987 0 1000 L 51 * * * * * * * 4261 * 2056 499 * * * * * * * * * 51 0 * * * * 0 * 2987 0 1000 A 52 277 * * * * 2905 * * * * * * * * * 4595 * * * * 52 0 * * * * * * 3168 0 0 N 53 4803 * 4048 2325 * 3996 * * 3170 * * 3657 * 3073 4287 2332 4677 4532 * * 53 0 * * * * * * 3168 0 0 H 54 * * * * * * 64 * * * 4532 * * * * * * * * * 54 0 * * * * * * 3168 0 0 K 55 3199 * * 3333 2133 5339 4911 * 1718 3545 * 3967 * * * 5248 * * * 5262 55 0 * * * * * * 3168 0 0 D 56 * * 251 * * * * * * * * 2649 * * * * * * * * 56 79 4222 * 0 * * * 3168 1114 0 R 57 * * * * * * * * * * 4038 * * * 91 * * * * * 57 0 * * * * * * 3047 0 0 L 58 * 4297 4683 5905 5128 * 1561 5253 5342 2579 3836 4611 * 5158 4475 * 4810 * 5570 3896 58 0 * * * * * * 3047 0 0 Y 59 3896 * * * * * 3272 * * * * * * * * 3036 2460 * * 928 59 0 * * * * * * 3047 0 0 C 60 * 139 * * * * * * * * * * * * * * * * * 3445 60 0 * * * * * * 3047 0 0 G 61 4420 * * * * 129 * * * * * * * * * 4676 * * * * 61 0 * * * * * * 3047 0 0 K 62 * * * * * * * * 489 * * 4159 * * 2110 * * * * * 62 0 * * * * * * 2966 0 0 C 63 * 103 * * * * * * * * * * * * * * 3856 * * * 63 228 2773 * 0 * * * 2953 1361 0 H 64 * 3228 * * * 3240 1002 * * * * * * 4147 * 4151 4949 * * 2806 64 94 3985 * 0 * * * 2707 1000 0 S 65 * * 3940 * * * * * * 1053 3186 * 3519 * * 3124 2825 * * * 65 0 * * * * * * 2670 0 0 V 66 3299 * * 2812 3097 * * * * * * * * * * * 776 4186 * * 66 0 * * * * * * 2571 0 0 Y 67 * * * * * * * * * 2669 * * * * * * * * * 247 67 0 * * * * * * 2538 0 0 K 68 * 3500 * * * * * * 603 * * * * * * * * 3007 2959 * 68 0 * * * * * * 2275 0 0 V 69 * * * * 1984 * * 2737 2856 * 2518 * * * * * * 1814 * * 69 0 * * * * * * 2244 0 0 N 70 * * 1752 * * * * * * * * 920 * * * * 2518 * * * 70 0 * * * * * * 2244 0 0 A 71 0 * * * * * * * * * * * * * * * * * * * 71 0 * * 0 * * * 1736 0 0 //