HHsearch 1.5 NAME c4njlA_ FAM FILE c4njlA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4njlA_.a3m DATE Sat Feb 22 08:14:32 2014 LENG 129 match states, 129 columns in multiple alignment FILT 22 out of 26 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4031 -1.6060 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCSCCCCCCCCCCCCCCCC CCCHHHHHHHHHHHHHHHTTCCCGGGSCC >sa_dssp EEEEDEDDDEDEEBDEDCEDACEDBEDDDDDCEDDDEDBDDDCEEBDDDDEDCDDDDEDEDEDCDDCBEDCDEDCEEDEDEEEDEEDDEDEEDEEDECEE CECEEDBDCCEEDCEDCDEDDDDDEECEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9358765139999999999999999999999999999999999549999999999997578899999999999987776642100125500689999999 99999999999999999997622996279 >Consensus vtqxVLxeNQkxiAxsFNxAigxixxxfxxvxxAlxkiQdvVNxxxxaLsxLxxqLxxnFgAISsSixdIxxRLDxleAdxQvDRLItxxGRLtaLnaxv xxxxxxxxsxxxaxxkiNesxixxxexxx >c4njlA_ ITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQSGGRGGSIPNFGSLTQINTTL LDLTYEMLSLQQVVKALNESYIDLKELGN >UniRef50_P59594(893-1013:1255) Spike protein S2 n=151 Tax=Betacoronavirus RepID=SPIKE_CVHSA E=5e-26 s/c=0.98 id=41% cov=95% VTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT--GRLQSLQTYV ---TQQLIRAAEIRASANLAATKMSE--- >UniRef50_B3FHU5(802-936:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=1e-19 s/c=0.72 id=38% cov=91% LTQSVLLDNQNLIANSFNKALKGIQSaldtvsqgfvevarGFESVTVALNKVQDVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKLDQINADAQVDRL IT--GRLTALSTYVASLQLAAYKADQsrrlALQKVEE---------- >UniRef50_Q91AV1(987-1117:1383) Spike glycoprotein n=50 Tax=Alphacoronavirus RepID=SPIKE_PEDV7 E=3e-17 s/c=0.69 id=35% cov=91% ---DVLQRNQQLLAESFNSAIGNITSAFESVKEaisqtskglntvahALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRLDILSADVQVDRL IT--GRLSALNAFVAQ-TLTKYTEVQASRKLAQQKVN------ >UniRef50_Q8BB25(991-1111:1349) Spike protein S2 n=85 Tax=Betacoronavirus RepID=SPIKE_CVP67 E=8e-42 s/c=1.41 id=47% cov=91% VTMDVLSQNQKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLIN--GRLTALNAYV SQQlsdsTLVKFSAAQAIEKVNE---------- >UniRef50_A3EXG6(908-1026:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=6e-38 s/c=1.33 id=43% cov=89% VTTQVLVENQKLIASSFNNALVNIQKGFTETSIALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLIN--GRMMVLNTYV TQL-LIQASEAKAQNAL------------ >UniRef50_P05135(785-905:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=1e-36 s/c=1.27 id=36% cov=91% ITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIIT--GRLSSLSVLA SAKQAEYYRVSQqrelATQKINE---------- >UniRef50_B2BW33(1066-1193:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=6e-36 s/c=1.18 id=35% cov=91% LTQNAIQENQKIIVQQFNKAIDSMTsafqsvnEGFSAVSSAITEVQNAVNAQSQALTKLLGQLNYNFGATTSSIKELYERLAKLEADVQVDRLIN--GRL TALSAFVAARQVEAAKVAsqrvLAAEKINE---------- >UniRef50_A8JP00(763-883:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=2e-29 s/c=1.07 id=31% cov=81% VVQNALVDDVNKLANGFNQLTASVSKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLIN--GRMNVLQLFV TNYKL------------------------ >UniRef50_B0R6I4(462-572:805) Transducer protein basT n=4 Tax=Halobacterium salinarum RepID=B0R6I4_HALS3 E=6e-05 s/c=0.44 id=23% cov=82% ---DVDSEPMQDIAEAFNDMMGDVEATLAQVRS----IADAVDAASTDVSTSAAEIRSASDQVSESVQDISA-----DADQQRDRLGTVGDEVTSLSATV ---EEIAASADDVAETVNQA--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 1616 * 2282 * * * * * * * 1095 * * 1 0 * * * * * * 2544 0 0 T 2 * * * * * * * * * * * * * * * * 205 2914 * * 2 0 * * * * * * 2544 0 0 Q 3 * * * * * * * * * * 2817 * * 403 * * 3294 * * * 3 0 * * * * * * 2544 0 0 Q 4 * * 1183 * * * * * * * * 1931 * 2474 * 3093 * * * * 4 0 * * * * * * 2930 0 0 V 5 2870 * * * * * * * * 3905 * * * * * * * 328 * * 5 0 * * * * * * 2930 0 0 L 6 * * 3168 * * * * 4069 * 270 * * * * * * * * * * 6 0 * * * * * * 2930 0 0 S 7 * * * * 3905 * * * * 4309 * 4977 * 1472 * 1721 * 2916 * 4191 7 0 * * * * * * 2930 0 0 E 8 * * 2970 883 * * * * 2653 * * * * 3841 3301 * * * * * 8 0 * * * * * * 2930 0 0 N 9 * * 3696 * * * * * * * * 301 3168 * * * * * * * 9 0 * * * * * * 2930 0 0 Q 10 * * * * * * * * * * 3168 * * 301 * * * 3696 * * 10 0 * * * * * * 2930 0 0 K 11 * * * 3905 * * * * 893 * * 2970 * 1905 * * * * * * 11 0 * * * * * * 2930 0 0 L 12 * * 3168 * * * * 1436 2796 1807 4851 * * 4191 * * * * * * 12 0 * * * * * * 2930 0 0 I 13 * * * * * * * 761 * 1287 * * * * * * * * * * 13 0 * * * * * * 2930 0 0 A 14 89 * * * * * * * * * * * * * * * * 4069 * * 14 0 * * * * * * 2930 0 0 N 15 3309 * 4755 2245 * * * * * * * 1214 * 3360 * 3027 * * * * 15 0 * * * * * * 2930 0 0 K 16 1882 * * * * 3696 * * 3003 * * * * 3129 * 1278 * * * * 16 0 * * * * * * 2930 0 0 F 17 * * * * 0 * * * * * * * * * * * * * * * 17 0 * * * * * * 2930 0 0 N 18 * * * * * * * * * * * 0 * * * * * * * * 18 0 * * * * * * 2930 0 0 Q 19 4725 * 3168 * * * * * 1724 * * 2695 * 1917 * 2953 * * * * 19 0 * * * * * * 2930 0 0 A 20 301 * * * * * * * * 3696 3168 * * * * * * * * * 20 0 * * * * * * 2930 0 0 L 21 * * * * * * * 1407 * 1747 2239 * * * * * 3696 4793 * * 21 0 * * * * * * 2930 0 0 G 22 3696 * 3437 4755 * 740 * * 4309 * * 4872 * * * 4191 * 4176 * * 22 46 4981 * 3807 107 * * 2930 1000 0 A 23 2380 * 3168 * * 4309 3905 * * * * 1647 * 3446 * 2870 4981 * * * 23 0 * * * * * * 2930 0 0 M 24 * * * * * * * 919 * * 1994 * * * * * * 2184 * * 24 0 * * * * * * 2930 0 0 Q 25 * * * 3168 * * * * * * * * * 1254 * 2787 1784 4872 * * 25 89 4069 * 2807 222 * * 2930 1000 0 T 26 2782 * * 1836 * * * * 2916 3262 * * * 4977 * 3131 3003 3896 * * 26 75 4309 * 3807 107 * * 2930 1000 0 G 27 2122 * * * * 1021 * * * 3696 * * * * * 3492 3168 * * * 27 0 * * * * * * 2930 0 0 F 28 3696 * * * 472 * * * * 2307 * * * * * * * * * * 28 56 4725 * 3807 107 * * 2930 1000 0 T 29 3168 * 3370 3131 * 4977 * * * 3696 * 4981 * * 3905 2337 1875 * * * 29 43 5090 * 3807 107 * * 2930 1000 0 T 30 2617 * * 4176 * * * * 4977 * * * * 2754 * 2023 1492 * * * 30 0 * * * * * * 2930 0 0 T 31 * * * * * * * 4725 * * 4981 * * * * * 1164 1046 * * 31 0 * * * * * * 2930 0 0 N 32 4034 * * * * * * * 3973 * * 1465 * * 3168 1509 4309 * * * 32 0 * * * * * * 2930 0 0 E 33 * * 2556 2763 * * * 4176 * 3213 * * * * 4725 1410 4191 4309 * * 33 406 2901 3168 3807 107 * * 2930 1440 0 A 34 0 * * * * * * * * * * * * * * * * * * * 34 51 4846 * 3807 107 * 0 2706 1000 1000 F 35 * * * * 2763 * * 3255 * 419 * * * * * * * * * * 35 0 * * * * * 0 2706 0 1000 Q 36 4846 * * * * 3345 * * * * * 1964 * 1547 * 4044 2543 4790 * * 36 115 3701 * 3807 107 * 0 2706 1273 1000 K 37 3444 * * 3945 * * * * 375 * * * * 3791 * * * * * * 37 0 * * * * 0 * 2706 0 1000 V 38 * * * * * * * 1022 * 4191 4176 * * * * * * 1332 * * 38 0 * * * * * * 2930 0 0 Q 39 3168 * * 3740 * * * * * * * * * 297 * * * * * * 39 0 * * * * * * 2930 0 0 D 40 3185 * 836 3973 * * * * * * * 2895 * * * 3386 4793 * * * 40 0 * * * * * * 2930 0 0 A 41 1585 * * * * * * * * * * * * * * * * 585 * * 41 0 * * * * * * 2930 0 0 V 42 * * * * * * * 4176 * * * * * * * * * 82 * * 42 0 * * * * * * 2930 0 0 N 43 * * 3168 * * * * * * * * 170 * * * * * * * * 43 0 * * * * * * 2930 0 0 N 44 1840 * * 4725 * * * * 3353 * * 3579 * 1982 * 2953 3068 * * * 44 0 * * * * * * 2930 0 0 N 45 3168 * * * * * 3241 * * * * 1626 * 1124 * * * * * * 45 0 * * * * * * 2930 0 0 A 46 1398 * * * * 1588 * * * * * * * * * 1796 * * * * 46 0 * * * * * * 2930 0 0 Q 47 2916 * 4309 3273 * * * * * 4755 4606 4981 * 1948 * 2353 2746 * * * 47 0 * * * * * * 2930 0 0 A 48 646 * 3168 * * * * 3093 * * * * * 2916 * * * * * * 48 0 * * * * * * 2930 0 0 L 49 * * * * * * * * * 301 * * * * * * * 2408 * * 49 0 * * * * * * 2930 0 0 S 50 * * * 3696 * * 3561 * * * * 1730 * * * 1285 2985 * * * 50 0 * * * * * * 2930 0 0 K 51 * * * 3905 * * 2910 * 2091 * * 3891 * 2325 * 3696 2176 * * * 51 0 * * * * * * 2930 0 0 L 52 * * * * * * * * * 283 * * * * * 3168 3905 * * * 52 0 * * * * * * 2930 0 0 A 53 2084 * * * * * * * * 2977 3093 * * * * * 1588 2417 * * 53 0 * * * * * * 2930 0 0 S 54 1710 * * * * 4069 * * 3036 3992 * 4851 * 3301 * 2359 * 3071 * * 54 0 * * * * * * 2930 0 0 E 55 * * * 2084 * 3696 * * * * * * * 689 * 3905 * * * * 55 0 * * * * * * 2930 0 0 L 56 * * * * * * * 2408 * 301 * * * * * * * * * * 56 0 * * * * * * 2930 0 0 S 57 3896 * * * * 4176 * * * * * 2985 * 2660 2782 1585 3130 * * * 57 0 * * * * * * 2930 0 0 N 58 4755 * * 3696 * * 3354 * 3905 * * 1403 * * * 2101 * 4309 * 4069 58 0 * * * * * * 2930 0 0 T 59 3168 * * * * * * * * * * 641 * * 3891 4176 3003 * * * 59 0 * * * * * * 2930 0 0 F 60 * * * * 170 * * * * * * * * * * 3168 * * * * 60 0 * * * * * * 2930 0 0 G 61 * * 2479 * * 846 * * * * * * * 1919 * * * * * * 61 0 * * * * * * 2930 0 0 A 62 170 * * * * * * * * * * * * 3168 * * * * * * 62 0 * * * * * * 2930 0 0 I 63 * * * * * * * 433 * * * * * * * * 4069 2326 * * 63 0 * * * * * * 2930 0 0 S 64 * * * * * * * * * * * * * * * 89 4069 * * * 64 0 * * * * * * 2930 0 0 A 65 2471 * * 3168 * * 5007 * * * * 3812 * * * 1021 3142 * * * 65 0 * * * * * * 2930 0 0 S 66 * * * * * * * * * * * 3696 * * * 320 * 3041 * * 66 0 * * * * * * 2930 0 0 I 67 * * * * 3696 * * 805 * 2063 * * * * * * * 3168 * * 67 0 * * * * * * 2930 0 0 G 68 3994 * 3973 3262 * 3579 * * 2870 * * 2639 * 1664 * 3780 * * * * 68 0 * * * * * * 2930 0 0 D 69 4872 * 680 1919 * * * * * * * * * * * * * 3696 * * 69 0 * * * * * * 2930 0 0 I 70 * * * * * * * 148 * 3360 * * * * * * * * * * 70 0 * * * * * * 2930 0 0 I 71 * * * * 4176 * * 3579 * 2615 * * * * * 2408 * * * 973 71 0 * * * * * * 2930 0 0 Q 72 2447 * 4872 4069 * * * * * 4309 * 2295 * 2135 * 2276 4851 * * * 72 170 * 3168 * * * * 2930 0 0 R 73 * * * * * * * * 4154 * * * * 3791 198 * * * * * 73 0 * * * * * 0 2706 0 1000 L 74 * * * * * * * * * 0 * * * * * * * * * * 74 0 * * * * * 0 2706 0 1000 D 75 3945 * 253 3379 * * * * * * * * * * * * * * * * 75 0 * * * * * 0 2706 0 1000 V 76 4790 * * 3190 * 3425 * 3144 1987 * * * * 4154 3620 3171 4438 3305 * * 76 0 * * * * * 0 2706 0 1000 L 77 * * * * * * * 2580 * 791 * * * * * * * 1973 * * 77 0 * * * * 0 * 2706 0 1000 E 78 3038 * 3168 1046 * * * * * * * 4309 * 2868 * 3390 * * * * 78 0 * * * * * * 2930 0 0 Q 79 192 * * * * * * * * * * * * 3003 * * * * * * 79 0 * * * * * * 2930 0 0 S 80 * * 585 3384 * * * * 3891 * * 3532 * * * 3579 * * * * 80 0 * * * * * * 2930 0 0 G 81 1284 * * * * 3579 * * * * * * * 1998 * * * 1970 * * 81 0 * * * * * * 2930 0 0 G 82 * * * 4176 * 3579 * * * * * 5090 * 266 * * * * * * 82 0 * * * * * * 2930 0 0 R 83 * * * * * * * 2615 * * 3696 * * * 2359 * * 824 * * 83 0 * * * * * * 2930 0 0 G 84 * * 126 * * 3579 * * * * * * * * * * * * * * 84 0 * * * * * * 2930 0 0 G 85 * * * * * 3579 * * * * * * * * 126 * * * * * 85 0 * * * * * * 2930 0 0 S 86 * * * * * * * 3905 * 235 * * * * * 3579 * * * * 86 0 * * * * * * 2930 0 0 I 87 * * * * * 3168 * 170 * * * * * * * * * * * * 87 0 * * * * * * 2930 0 0 P 88 * * * * * * * * * * * 1757 3284 * * * 733 * * * 88 2260 * 338 * * * * 2955 0 0 N 89 * * * * * * * * * * * 658 * * * * * 1449 * * 89 0 * * * * * 0 1991 0 2673 F 90 * * * * 658 1449 * * * * * * * * * * * * * * 90 0 * * * * 0 * 1991 0 2673 G 91 * * 3235 * * 213 * * * * * * * 4998 * * * * * * 91 0 * * * * * * 2955 0 0 S 92 * * * 2863 * * * * * * * * * * 338 3809 * * * * 92 0 * * * * * * 2955 0 0 L 93 * * * * * * * 4998 * 449 2946 * * * * * * 3235 * * 93 0 * * * * * * 2955 0 0 T 94 2097 * * * * * * * * * 4208 3725 * 4256 * 2650 1235 * * * 94 0 * * * * * * 2955 0 0 Q 95 991 * * * * * * * 4998 * * * * 3809 * 1919 * 2946 * * 95 0 * * * * * * 2955 0 0 I 96 * * * * * * * 3284 * 156 * * * * * * * * * * 96 0 * * * * * * 2955 0 0 N 97 * * * * * * * * * * * 758 * 2966 * 1834 * * * * 97 0 * * * * * * 2955 0 0 T 98 828 * * * * * * * * 3725 * * * * * 4774 1949 3933 * * 98 116 3689 * 2000 415 * * 2955 1396 0 T 99 * * * * 1609 * * * * 3933 * * * 3689 * * 2260 * * 1643 99 146 3379 * 2000 415 * * 2955 1504 0 L 100 3933 * * * * * * * * 1856 * * * * * * * 603 * * 100 249 * 2657 * * * * 2955 0 0 L 101 2045 * * * * * * * * 2538 * * * * * 2112 1711 4361 * * 101 0 * * * * * 0 2694 0 1595 D 102 2817 * 2992 * * * * * * * * 2861 * 1170 3437 4110 * * * * 102 237 3932 3544 2000 415 * 0 2694 1193 1595 L 103 * * * * * * * 4578 3636 1681 * * * 4561 3805 4496 3445 4437 * 1892 103 320 2955 3842 2000 415 0 * 2709 1540 2079 T 104 4916 * * 2725 * * * * 3598 4768 * 4969 * 2469 * 3809 1278 * * * 104 0 * * * * 0 * 2912 0 1000 Y 105 3239 * * 1755 * * * * * 1653 * 4824 * 3592 * * 4998 4084 * 3809 105 0 * * * * * * 2955 0 0 E 106 3371 * * 2046 * * * 2201 * 4950 * * * 3365 * * 4766 1849 * * 106 0 * * * * * * 2842 0 0 M 107 1833 * * * * * * * 2221 3465 3145 * * 3462 2842 * * * * 3816 107 0 * * * * * * 2842 0 0 L 108 1171 * * * 3797 4776 * 4102 * 3753 4952 * * * 4548 4686 * * * 2314 108 0 * * * * * * 2842 0 0 S 109 4665 * * * * * * * 3077 * * * * 3812 2952 805 4766 4952 * * 109 0 * * * * * * 2842 0 0 L 110 1531 * * 2860 * * * 4686 * 3231 * * * * 2088 * * 2882 * * 110 0 * * * * * * 2842 0 0 Q 111 1964 * 2529 * * * * * 5097 5012 * * * 1969 3730 3275 * 3715 * * 111 96 3951 * 2000 415 * * 2842 1000 0 Q 112 * * 3067 3465 * * * * 4023 1546 * * * 1529 4665 * * * * * 112 328 2299 * 2069 393 * * 2842 1822 0 V 113 482 * * * * * * 4102 * * * * * * * * * 2147 * * 113 0 * * * * * * 2842 0 0 V 114 2442 * * * * * * 3797 4913 4214 3766 * * 1685 4102 4766 3816 3231 * * 114 0 * * * * * * 2842 0 0 K 115 4102 * 3719 1350 * * * * 3231 * * 4023 * 1895 4766 * * * * * 115 0 * * * * * * 2842 0 0 A 116 2882 * * * * * * * 612 * * * * 4952 * 4102 3067 * * * 116 0 * * * * * * 2842 0 0 L 117 4102 * * * * * * 1504 * 2288 * * * * * * * 1379 * * 117 0 * * * * * * 2842 0 0 N 118 4668 * * 4105 * * * * * * * 148 * * * * * * * * 118 0 * * * * * * 2777 0 0 E 119 * * * 371 * * * * * 3973 * * * 2617 * * * * * * 119 0 * * * * * * 2777 0 0 S 120 1364 * * * * * * * * * * * * 2250 * 1318 * * * * 120 0 * * * * * * 2771 0 0 Y 121 2054 * * * * * * * 1922 * * * * * * * * * * 1013 121 0 * * * * * * 2390 0 0 I 122 * * * * * * * 1013 * * * * * * * * 2054 1922 * * 122 0 * * * * * * 2390 0 0 D 123 * * 1013 * * * * * 2054 * * 1922 * * * * * * * * 123 0 * * * * * * 2390 0 0 L 124 * * * * * * * * * 637 1487 * * * * * * * * * 124 0 * * * * * * 1867 0 0 K 125 * * * * * * * * 637 * * * * * * 1487 * * * * 125 0 * * * * * * 1867 0 0 E 126 * * * 0 * * * * * * * * * * * * * * * * 126 0 * * * * * * 1867 0 0 L 127 * * * * * * * * * 0 * * * * * * * * * * 127 0 * * * * * * 1260 0 0 G 128 * * * * * 0 * * * * * * * * * * * * * * 128 0 * * * * * * 1260 0 0 N 129 * * * * * * * * * * * 0 * * * * * * * * 129 0 * * 0 * * * 1260 0 0 //