HHsearch 1.5 NAME c4n21E_ FAM FILE c4n21E_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4n21E_.a3m DATE Sat Nov 30 08:43:34 2013 LENG 121 match states, 121 columns in multiple alignment FILT 43 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.3693 -3.0129 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCGGGTSCCSSCSCCCCC CHHHHHHHHHHHHHHHHHTTC >sa_dssp EEEEECEEEDEEDEDEEDEDEDEDDEDEDDEEEEEEDDDCDEDCDECDEDBDDDDEEBEEECDDCDEDDEEDEDDDEECEEEECBCECEEEEECEDEDED DCEECDDEBEEDDDDCEDDEE >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC CCCHHHHHHHHHHHHHHHHCC >ss_conf 9744140568877677887799999899999999999986678765211389999999999999999999888889999840881423045656500432 633299999999999996509 >Consensus xxxxxgxxxxxxdxxxxxxxxiyxxxnxixrLxxlixxixxxxxkxaNxTxxALsxLxxxxtslrxxvlqNrxaLDxLlxxxGgxCxxxxGxxCCxxixd xsxxIxdxixkixxxxxKlxx >c4n21E_ NLYFQGNMKQIEDKIEEILSKIYHIENEIARIKKLIGAIASKIIKTANYTTNALFLLNKEESEIRDHVVEHELALNYLLAHQGGLCNVVKGPMCSSDIDD FSKNVSDMIDKVHEEMKKFYH >UniRef50_Q8JGM1(263-352:434) Female expressed transcript 1 n=1 Tax=Gallus gallus RepID=Q8JGM1_CHICK E=5e-20 s/c=1.10 id=27% cov=75% ----------------------------VAQLEKAILNISATLEIVENATTDALRAIQEEVSSLSKVVLQNRMALDLLTAKEGGVCTIIN-QSCCAYINK DLRIETDL-RKIWEQTKVLH- >UniRef50_P60509(345-425:514) Transmembrane protein domain n=1 Tax=Homo sapiens RepID=ERB1_HUMAN E=1e-16 s/c=1.08 id=28% cov=59% -----------------------------------IEALANFTQRALNDSLQSISLMNAEVYYMHEDILQNRMALDILTAAEGGTCALIK-TECCVYIPN NSRNIS--------------- >UniRef50_UPI000194BBE5(1939-2048:2124) PREDICTED: similar to Gag-Pro-Pol-Env protein n=7 Tax=Taeniopygia guttata RepID=UPI000194BBE5 E=1e-28 s/c=1.15 id=28% cov=90% -LYNWGQTKRI---AESIFLPWYAAAKALGELSHL----ECWINKNANATSAALSDLLADEQTTRHATLQNRAAIDFLLLAHGHSCEDFDG-LCCFNLSS RSTSIQAHIKQIREQVK---- >UniRef50_Q86UH7(482-589:682) Envelope glycoprotein n=8 Tax=root RepID=Q86UH7_HUMAN E=3e-27 s/c=1.13 id=29% cov=90% -IQYYGPATWVQDGSWGYQTPIYML-NQIIRLQTVLEII-------TNETGRALTVLARQETQMRNAIYQNRLALDYLLAAEGGVCGKFNLTNCCLQIDD QGQVIENIV----RDMTKLAH >UniRef50_UPI0000F2D94F(560-658:751) PREDICTED: similar to Melanoma antigen n=5 Tax=Monodelphis domestica RepID=UPI0000F2D94F E=9e-17 s/c=0.89 id=23% cov=68% -------------------------------LKHLTAAVNEDLAKLE----STLSYLEKSHDSPAEVVLQNRRGLDLLFLKEGGLCAAL-GEECCFY-AN HSGIIRDTLDQLRKNLEQ--- >UniRef50_UPI00016E045D(82-176:272) UPI00016E045D related cluster n=4 Tax=Takifugu rubripes RepID=UPI00016E045D E=4e-14 s/c=0.83 id=28% cov=60% ----------------------------------------------TNLTKVALTGVKEEMTALRLMAMQNRMALDLITAPQGGVCAMV-GDYCCTFIPE NDAD-GHLIDSALRNLTKL-- >UniRef50_P97406(477-541:596) Proviral envelope protein n=5 Tax=Mus musculus RepID=P97406_MOUSE E=0.0004 s/c=0.71 id=26% cov=29% ---------------------------------------------------------------------------------QDGLCKPLE-KRCCTFVDN L-KHARELLAKVRKRLE---- >UniRef50_Q6UY66(533-633:681) GP2 n=27 Tax=Lake Victoria marburgvirus RepID=VGP_MABVO E=4e-17 s/c=0.88 id=35% cov=71% ---------------------IKNQNNLVCRLRRL-----------ANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCKVL-GPDCCIGIED LSRNISEQIDQIKKDEQK--- >UniRef50_UPI000155602A(29-87:279) PREDICTED: similar to female expressed transcript 1 n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155602A E=1e-08 s/c=1.03 id=33% cov=37% ----------------------------------------------SNLTGSSLSDLQTEVSSLYEVVSWNHMALDLLLGAQGAVCAAIK---------- --------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 0 * * * * * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * 1320 * 738 * * * * * * * * * * 2 0 * * * * * * 2164 0 0 Y 3 * * * * * * * * * * * * * 1320 * * * * * 738 3 0 * * * * * * 2164 0 0 F 4 * * * * 1677 * * * * * * 1802 * * * * * * * 1320 4 0 * * * * * * 2164 0 0 Q 5 * * * * * * * * * * * * * 1677 * * * * 1802 1320 5 0 * * * * * * 2164 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 0 * * * * * * 2164 0 0 N 7 * * * * * * * * * * * 1677 1320 1802 * * * * * * 7 0 * * * * * * 2164 0 0 M 8 1320 * * * * * * * * * 1677 * * * * * 1802 * * * 8 0 * * * * * * 2164 0 0 K 9 * * * * * * * * 738 * * * * * * * 1320 * * * 9 0 * * * * * * 2164 0 0 Q 10 * * * * * * * * * * * * * 1677 1802 * * * 1320 * 10 0 * * * * * * 2164 0 0 I 11 2266 * * * * * * 738 * * * * * * * * * 2377 * * 11 488 * 1802 * * * * 2164 0 0 E 12 * * * 438 * * * * * * * * * 1933 * * * * * * 12 0 * * * * * 0 1707 0 1000 D 13 * * 0 * * * * * * * * * * * * * * * * * 13 0 * * * * * 0 1707 0 1000 K 14 * * * * * 880 * * 1131 * * * * * * * * * * * 14 0 * * * * 0 * 1707 0 1000 I 15 1802 * * * * * * 1677 * * 2266 * * * * 2377 * * * * 15 0 * * * * * * 2164 0 0 E 16 * * * 738 * * * * * * * * * * * * * * 1320 * 16 0 * * * * * * 2164 0 0 E 17 * * * 1677 * 1320 * * * * * * * * * 1802 * * * * 17 0 * * * * * * 2164 0 0 I 18 * * * * * * * 738 * * * * * * * * * * * 1320 18 0 * * * * * * 2164 0 0 L 19 * * * * 1802 * * * * 1677 * * * 2377 2266 * * * * * 19 0 * * * * * * 2164 0 0 S 20 * * * * * * * * * 1802 * * * * * 1677 1320 * * * 20 0 * * * * * * 2164 0 0 K 21 * * * * * * * * 1677 * * * 541 * * * * * * * 21 0 * * * * * * 2164 0 0 I 22 * * * * * * * 754 * * * * * * * * * 2584 2057 * 22 0 * * * * * * 2366 0 0 Y 23 * * * * * * * * 2447 * * * * * * * * * * 292 23 0 * * * * * * 2366 0 0 H 24 2057 * * * * * 1949 * * * 1657 2447 * * * * * * * * 24 0 * * * * * * 2366 0 0 I 25 2057 * * * * * * 1949 * 1657 * * * 2447 * * * * * * 25 550 * 1657 * * * * 2366 0 0 E 26 1574 * * 1385 * * * * * * * 1830 * * * * * * * * 26 0 * * * * 0 * 1952 0 1179 N 27 * * * * * * * * 2057 * * 397 * * * * * * * * 27 0 * * * * * * 2366 0 0 E 28 2057 * * 1949 * * * * * 2447 * * * 2733 2584 * * * * * 28 0 * * * * * * 2366 0 0 I 29 * * * * * * * 1123 * 2419 * * * * * * * 1499 * * 29 0 * * * * * * 2717 0 0 A 30 1288 2781 * * * 2419 * 1955 * * * * * * * * * * * * 30 0 * * * * * * 2717 0 0 R 31 * * * 2419 * * * * * * * * * 2262 726 * * * * * 31 0 * * * * * * 2717 0 0 I 32 * * * * * * * 2527 * 275 * * * * * * * * * * 32 0 * * * * * * 2965 0 0 K 33 * * * 2581 * * * * 1604 * * * * 2140 3006 2713 * * * * 33 0 * * * * * * 2965 0 0 K 34 3078 * * * * * 1700 * 1553 * * * * * 3006 * 3204 * * * 34 0 * * * * * * 2965 0 0 L 35 2581 * * * * * * * * 723 * * * * * * * 2140 * * 35 468 * 1852 * * * * 2965 0 0 I 36 * * * * * * * 660 * 2184 * * * * * * 2766 * * * 36 0 * * * * * 0 2924 0 1511 G 37 2915 * * 1146 * 1853 * * * 2851 * * * * * * * * * * 37 0 * * * * * 0 3072 0 1511 A 38 1226 * * * * * * 2358 * * * 1928 * * 3123 * * * * * 38 0 * * * * * 0 3072 0 1511 I 39 * * * * * * * 1040 * 1392 * * * * * * * 2915 * * 39 313 * 2358 * * 894 1114 3072 0 1511 A 40 1105 * * 2140 * * * * * * * 2772 * * * 2628 * * * * 40 0 * * * * * 0 2851 0 1666 S 41 2628 1540 * 2772 * * * * * * * 2588 * * * 2461 * * * * 41 0 * * * * * 0 2851 0 1666 K 42 * * 2772 * 2588 * * * 2461 * * * * * * * 2628 * 1540 * 42 0 * * * * * 0 2851 0 1666 I 43 * * * * * * * 2112 * 1954 * * * * * 3678 2753 1815 * * 43 0 * * * * * 0 2906 0 1666 I 44 2244 * * 2871 * * * 2649 * * * 3798 * 2753 * * 3053 2718 * * 44 0 * * * * * 0 2906 0 1666 K 45 * * * * * * * 2871 484 * * * * * 2753 * * * * * 45 0 * * * * * 0 2906 0 1666 T 46 2888 * * * * * * * * 3199 * 3913 * 1576 * 3239 2823 3225 * * 46 0 * * * * 0 * 3013 0 1666 A 47 963 * * 3124 * * * * * 3846 * * * * * 2757 2690 * * * 47 99 * 3910 * * * * 3565 0 0 N 48 * * * * * * * * * * * 0 * * * * * * * * 48 0 * * * * * 0 3496 0 1000 Y 49 3512 * 3776 2691 * * 4300 * * 1350 * * * 4037 * 4278 * * * 2956 49 0 * * * * * 0 3496 0 1000 T 50 * * * * * * * * * * * * * * * 3776 109 * * * 50 0 * * * * * 0 3496 0 1000 T 51 3147 * * * * 2753 * * 4131 3776 * * * * 2832 2085 2105 * * * 51 0 * * * * 0 * 3496 0 1000 N 52 2614 * 2048 * * 4540 * * 3173 * * 4012 * 2797 5064 2660 * 4408 * * 52 0 * * * * * * 3851 0 0 A 53 699 * * * * * * * * 4860 * * * * * 1906 4882 4365 * * 53 0 * * * * * * 3858 0 0 L 54 * * * * * * * 2025 * 566 * * * * * * * 3663 * * 54 0 * * * * * * 3858 0 0 F 55 4489 * 3682 2707 4055 4103 * * * * * 4580 * 3429 5214 1666 2950 * * * 55 0 * * * * * * 3858 0 0 L 56 2779 * 2667 * 5538 2471 * 4721 * 1899 * * * * 4895 4987 4578 5148 * 4220 56 0 * * * * * * 3855 0 0 L 57 * * * * 4286 * * 3937 * 328 4585 * * * * * * 4472 * * 57 0 * * * * * * 3694 0 0 N 58 3253 * * 2709 * * 4913 * 4472 1835 * 2943 * 2857 * 3357 5802 * * * 58 0 * * * * * * 3694 0 0 K 59 3277 * 5126 1739 * * * * 2009 * * * * 3879 3038 4017 3865 * * * 59 0 * * * * * * 3694 0 0 E 60 4311 * 2364 1888 * * * * * * * * * 1982 * 2425 * 4449 * * 60 0 * * * * * * 3730 0 0 E 61 4723 * * 2189 * * 3945 * 5031 2111 4498 * * 5140 * * 3378 2017 * * 61 0 * * * * * * 3730 0 0 S 62 3156 * 5646 3317 * 4559 * * 4474 * * * * 4176 * 2008 1579 * * 4593 62 0 * * * * * * 3730 0 0 E 63 3165 * * 2689 * * * 3888 4723 * * * 4559 3646 * 1458 4176 4474 * 4593 63 0 * * * * * * 3730 0 0 I 64 * * * 4449 5071 * * 2822 * 1497 2934 * 4379 * * * 2001 * * * 64 0 * * * * * * 3730 0 0 R 65 3465 * * * * * 4593 * * * * * * * 968 1691 * * * 4416 65 0 * * * * * * 3730 0 0 D 66 4330 * 4085 1702 * * 3614 * 3433 3165 * 4036 * 3145 5153 * 3378 * * * 66 0 * * * * * * 3730 0 0 H 67 2202 * 4593 * 3752 * 4085 5555 * * 3128 * * * 4661 * * 1386 * 4311 67 0 * * * * * * 3730 0 0 V 68 2760 * * * * * * 3780 * * * * * * * 3654 2239 1034 * * 68 0 * * * * * * 3115 0 0 V 69 * * * * * * * * * 658 3764 * * * * 4346 * 2927 4789 3720 69 0 * * * * * * 3115 0 0 E 70 * * 5525 3316 * * * 4735 * 4671 * * * 453 5504 * * * 4358 * 70 0 * * * * * * 3125 0 0 H 71 * * * * * * 3928 * * * * 98 * * * * * * * * 71 0 * * * * * * 3125 0 0 E 72 * 5022 * 3928 * * 3688 * * * * * * 4438 450 * * * 4388 * 72 0 * * * * * * 3125 0 0 L 73 2672 * * * * * 4735 4331 3691 2635 2226 * * 4438 2320 5118 * 5131 * * 73 0 * * * * * * 3125 0 0 A 74 390 5034 * * * 2642 * * * * * * * * 4443 * * * * * 74 0 * * * * * * 3145 0 0 L 75 * * * * * * * 1870 * 520 * * * * * * * 5115 * * 75 0 * * * * * * 3145 0 0 N 76 * * 141 * * * * * * * * 3424 * * * * * * * * 76 0 * * * * * * 3145 0 0 Y 77 * * * * 2119 * * 4243 * 1404 3071 * * * * * * 5473 * 2341 77 0 * * * * * * 3145 0 0 L 78 * * * * * * * 3947 * 97 * * * * * * * * * * 78 0 * * * * * * 3145 0 0 L 79 * * * * 2390 * * * * 645 * * * * * * 3013 4443 * * 79 0 * * * * * * 3145 0 0 A 80 1180 * * * * 4367 * * * 1255 6023 * * 4687 * * 4752 * * * 80 0 * * * * * * 3145 0 0 H 81 2246 * * 2330 * 5610 3954 * 3366 3890 * 5522 5043 2795 3512 5034 5239 * * * 81 0 * * * * * * 3145 0 0 Q 82 * * * 1792 * * 2599 * 2718 * * * * 1762 5369 * * * 3733 * 82 0 * * * * * * 3159 0 0 G 83 * * 5773 5220 * 169 * * * * * 4610 * * * 5348 * * * * 83 0 * * * * * * 3159 0 0 G 84 4373 * * * * 392 2398 * * * * * * * * * * * * * 84 0 * * * * * * 3159 0 0 L 85 * * * 5421 * 3642 * * * 1661 * * * * 4610 4465 2734 1540 * * 85 0 * * * * * * 3159 0 0 C 86 * 56 * * * * * * * * * * * * * * * * * 4717 86 36 * 5337 * * * * 3159 0 0 N 87 1783 * * 3202 * 3888 * * 2772 4427 * 3944 * * 4591 4219 5728 2809 * 5745 87 0 * * * * 0 * 3151 0 1000 V 88 2200 * 3460 3312 * * * 3634 3915 4133 2511 * 5761 * * * * 2372 * * 88 0 * * * * * * 3163 0 0 V 89 * * * * 1527 * * 2488 * 1583 * * * * * * * 2828 * * 89 531 * 1700 * * * * 3163 0 0 K 90 3655 * 3641 3033 * * 4930 * 1335 4702 * 2137 * * 5424 * * * * * 90 722 * 1344 * * 0 * 2847 0 2291 G 91 * * * 4351 * 205 * * * 3581 * * * * * * * * * * 91 410 * 2017 * * 0 * 3086 0 2235 P 92 * * 3088 1918 * * * * 3882 * * 4979 2182 3683 * 4532 2501 * * * 92 0 * * * * 0 * 2846 0 1636 M 93 * * 4440 2505 5217 * * * * 2882 2733 3452 * 2967 5389 2418 * * * 4854 93 0 * * * * * * 3160 0 0 C 94 * 0 * * * * * * * * * * * * * * * * * * 94 0 * * * * * * 3160 0 0 S 95 * 130 * * * * * * * * * * * * * 3542 * * * * 95 0 * * * * * * 3144 0 0 S 96 4868 * * * 1640 * * 3396 * 3978 5007 * * * * 3187 2114 3555 * 5086 96 0 * * * * * * 3144 0 0 D 97 * * 2663 3068 2340 4401 * * * * * 2839 * 5081 * * * * * 1696 97 86 * 4106 * * * * 3144 0 0 I 98 5059 * * * * * * 934 * 1965 * * 4348 * 4891 * * 3215 * * 98 197 * 2973 * * 0 * 3132 0 1290 D 99 3590 * 1745 4256 * * 4252 * * * * 4670 2030 * * 2351 4893 * * * 99 0 * * * * 0 * 3143 0 1763 D 100 * * 1090 3884 * * * * 4868 * * 1911 * * * 2624 * * * * 100 0 * * * * * * 3144 0 0 F 101 * * 4539 4663 3614 * 2315 * 3435 3620 4782 3057 * 3854 3317 4701 * * 4269 4481 101 53 * 4805 * * * * 3686 0 0 S 102 3691 * 3920 * * 2423 * * * 4491 * * * * * 875 3641 * * * 102 0 * * * * 0 * 3638 0 1000 K 103 3393 * * 3073 * 2293 * * 2260 * * * 4988 3367 2724 * 3422 * * * 103 0 * * * * * * 3686 0 0 N 104 4213 * 3233 * * * 4805 2627 * 5252 * 1882 * * * 2468 3912 3360 * * 104 94 * 3990 * * * * 3686 0 0 V 105 4664 * * 3458 * * * 1030 * * * * * * * * * 1397 * * 105 0 * * * * 0 * 3569 0 1000 S 106 * * * 3822 * 3956 3311 * 4010 * * * * 2596 2730 2699 2109 * * * 106 0 * * * * * * 3723 0 0 D 107 4017 * 1356 2342 * * 3214 * 3496 5112 * 4715 * * * 4707 * 4361 * * 107 62 * 4582 * * * * 3769 0 0 M 108 * * 4671 4118 4554 * 5110 3615 3833 2267 3559 4803 * 3562 * 2470 4414 4671 * * 108 79 * 4234 * * 0 * 3745 0 1000 I 109 4435 * * * 4943 * * 1169 4661 3368 2995 * * * * * 3512 2977 * * 109 58 * 4666 * * 0 * 3727 0 1000 D 110 2817 * 1754 * * * * * 2962 * * 3348 * 2220 4407 * 3770 * * * 110 0 * * * * * 0 3750 0 1000 K 111 * * * 2683 * * 4548 * 1073 4951 * * * 2394 * 3863 * * 4832 * 111 0 * * * * * 0 3750 0 1000 V 112 3863 * * * * * * 1200 * 2778 2395 4651 * * * * * 3056 * * 112 0 * * * * * 0 3750 0 1000 H 113 * * * 4548 * * 3566 * 2202 3832 * 4469 * 2880 1892 * 4491 * 4370 4577 113 0 * * * * 0 * 3761 0 1000 E 114 * * 2992 1767 * 3450 4124 * 2065 * * * * * 3161 * 3629 * * * 114 0 * * * * * * 3828 0 0 E 115 * * 2520 2614 * 5075 3701 * 5322 * 3291 3420 * 2977 2657 * * * 4334 * 115 0 * * * * * * 3796 0 0 M 116 * * * 4231 3178 * * 2743 * 1827 2314 * * * * * 3443 3157 * * 116 0 * * * * * * 3815 0 0 K 117 * * 3396 3704 * 4230 * * 1864 * * 4590 * 2325 4163 * 2298 * * * 117 0 * * * * * * 3739 0 0 K 118 * * * * * * * * 628 * * 3792 * 3501 3019 * * 3854 * * 118 0 * * * * * * 3566 0 0 F 119 * * * * 2814 * * 1982 * 726 * * * * * * * * * * 119 0 * * * * * * 3227 0 0 Y 120 2205 * * * 1934 * 1963 * * * * * * * * * * * * 1916 120 0 * * * * * * 2434 0 0 H 121 * * * * * * 0 * * * * * * * * * * * * * 121 0 * * 0 * * * 1546 0 0 //