HHsearch 1.5 NAME c4hhxA_ FAM FILE c4hhxA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4hhxA_.a3m DATE Sat Apr 6 08:25:10 2013 LENG 104 match states, 104 columns in multiple alignment FILT 108 out of 748 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.4532 0.4174 SEQ >ss_dssp CCCCCCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHSSSHHHHHBTTBCHHHHHHHHHHHHHTCHHHHHHHHHHHH HHHC >sa_dssp EEDEDBDDECBCDBBCCBCECCEEECECCDAACDBBEEAEEEDEEEBCCCADDBBDCCEEDECBBDABDCAACEEBBEDADDACEDEECCDBBCDADEEB DEEE >ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH HCCC >ss_conf 9542048999999999999999779969999999999626854189999999999855278309999973099999999999997399899999999985 0689 >Consensus xxxkxisxxxrixfxxxLaxLlxsGixlxxALxxlxxxxxxxxxxxxxxxlxxixxxixxGxslsxAlxxxfpxxxixlIxxGExsGxLxexlxxixkxx xxxx >c4hhxA_ HXXKIISKKYRLELYSXLVDLLNDNIPLYDALNKIQNEGVGIYDKNFIKSIELIKDRXKSNSSLTDALTGLIPDKEVLXINVAENSGKISSGIAAIRKNI IDAD >UniRef50_B1MX42(5-96:338) Type II secretory pathway, component PulF n=1 Tax=Leuconostoc citreum KM20 RepID=B1MX42_LEUCK E=5e-05 s/c=0.53 id=17% cov=86% -------QQQQIVFFQSLGALLQSGYDMAQSLDTLF-----LAHHSWRSWLSDIQKDLAAGQSFSDSLRPYVSLDILLQLRLADQHGNLSESLILIGKNL ---- >UniRef50_Q2T779(14-112:358) Type IV pilus biogenesis protein n=34 Tax=Burkholderia RepID=Q2T779_BURTA E=3e-16 s/c=0.87 id=16% cov=88% -----LNADERLRVYRKIAKMLGNGLPLLKVLEELEwraSREGRKPHEPLAIVLSDWRLAVQNGGMLSEAMGAWVPATEQMIVAAGEQAGRIENALASV- ------- >UniRef50_C6BQF1(33-129:384) Type II secretory pathway component PulF-like protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BQF1_RALP1 E=1e-09 s/c=0.66 id=19% cov=91% -------KQRRGEFYGDLAGIMDAqpGRNIRELLEpYVERYGSLPEGKLSAFWLQRM---DEDVATFSEALTGTVPSEDLTVLSFAERAGDLKVGLKQLS QSILGME >UniRef50_B0MCL0(257-353:401) Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MCL0_9FIRM E=5e-05 s/c=0.50 id=20% cov=91% ---KLLRKIYTARFARTLCSLYSSGIPIIQAMQIGSSTVGNRY---IEEQFGQAVDSIRRGESLSVSLMEIdgFQKKLSSAIQVGEETGSLDEMLDSIAE SL---- >UniRef50_C4K5P2(26-127:366) PilR type IV pilus biosynthesis protein n=3 Tax=Enterobacteriaceae RepID=C4K5P2_HAMD5 E=5e-11 s/c=0.67 id=20% cov=96% ---KTFSARDRIAFYDMLAFLLDNNKSLQQAFIDMRHvvTDFGRKHHPCSVLLTDCLSAIDEGQSaFEKVLLEWVPVQEATLMGSGMLSGKLSDALRRAR QMVEG-- >UniRef50_Q97HA8(54-147:396) General secretion pathway protein F n=1 Tax=Clostridium acetobutylicum RepID=Q97HA8_CLOAB E=8e-10 s/c=0.69 id=17% cov=84% ---KKVSSKELYIFSKQMSYMMNAGFNICESLSIMYD----KFQGNMRRIIKCIEKGIENGNSIYKSvqyCGDSIPYFFKSMLFIGEESGNLSEVF---- ------- >UniRef50_UPI0001744D6D(58-154:405) type II secretion system protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744D6D E=3e-07 s/c=0.58 id=20% cov=89% -----ISTKDAIKLFRGLASMLRANISTADALLY---YAQGLPDPALQGSLISIRNRLEAGLPVHIAFakERKFDATIITMIEAGADAGQLHEAFSSMAR KL---- >UniRef50_UPI0001BCC841(60-156:404) type II secretion system protein n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCC841 E=0.0004 s/c=0.48 id=18% cov=81% -----ITAEERIAFFHESAALLQAGMPVHEA-LARLAEAAKASSAAYGKLVAELHRSVTRGTALSQAMemhPQAFAPSVVGMVRAAEESGTL-------- ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 0 * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 X 2 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 2 * * * * * * * 1000 0 0 X 3 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 3 * * * * * * * 1000 0 0 K 4 * * * * * * * * 326 * * * * 2304 * * * * * * 4 0 * * * * * * 5449 0 0 I 5 * * * * 2588 * * 2043 2640 2636 * 4662 * * 4465 4585 4232 4476 * 4471 5 0 * * * * * * 5903 0 0 I 6 * * * * 4214 * * 1137 * 2152 3948 * * * * * * 2311 * * 6 0 * * * * * * 6805 0 0 S 7 5758 * 4074 4935 * 5803 * * 3529 * * 2486 4605 5409 3892 1439 3243 * * * 7 0 * * * * * * 7054 0 0 K 8 3419 * 4356 3448 * * * 5861 2049 3645 * 2887 5158 4447 3578 4409 3773 * * 6136 8 0 * * * * * * 7154 0 0 K 9 4434 * 4005 3472 * 5925 * 5817 1815 4477 5980 4426 * 3870 3055 3538 4808 4298 * 6119 9 0 * * * * * * 7168 0 0 Y 10 6256 * 2009 2538 * * * 4949 3814 6209 * 3962 * 3217 3896 6080 6027 5183 * 2710 10 0 * * * * * * 7222 0 0 R 11 6091 * * * * * 6266 2927 3897 2455 5049 * * 5221 1151 * 5904 5305 * 4569 11 27 5757 * 2585 263 * * 7245 1000 0 L 12 2916 * 5613 6129 6195 4920 * 1533 * 3424 6105 4898 * 4810 * 3535 4697 2849 * * 12 0 * * * * * * 7216 0 0 E 13 3259 * 5029 2978 3926 5718 6135 3634 5097 3284 6274 5908 5445 3527 2794 4254 * 4406 * 4524 13 0 * * * * * * 7250 0 0 L 14 6086 * * * 825 * * 3812 * 1919 5452 * * * * 5094 * 4918 * * 14 19 6294 * 2585 263 * * 7344 1000 0 Y 15 3767 4576 * * 2105 * * 5445 * 3063 * 5827 * * * 4094 3336 5474 5974 1756 15 37 5290 * 1524 617 * * 7344 1678 0 S 16 6409 * 4280 3283 6177 4289 4641 * 4377 4972 * 5136 * 2885 1771 2965 6603 * 6655 4509 16 0 * * * * * * 7480 0 0 X 17 3814 * 4333 2560 5184 5424 5022 * 4578 * 5272 3912 * 2504 5391 3139 2738 5487 * 6943 17 0 * * * * * * 7476 0 0 L 18 * * * * 3469 * * 5192 * 482 3162 * * * * 6248 6227 6102 6210 * 18 0 * * * * * * 7482 0 0 V 19 1354 6470 * 6632 * 2929 6746 5225 * 6995 6447 5380 * * 4402 2163 6060 4985 * 4067 19 0 * * * * * * 7482 0 0 D 20 3480 * 4818 4995 4329 4662 * 3398 5647 2736 3710 5499 * 3884 5503 3111 3220 3872 * 6657 20 0 * * * * * * 7482 0 0 L 21 * 6465 * * 6288 * * 4524 * 766 1979 6314 * * * 6118 5685 6629 * 4866 21 0 * * * * * * 7518 0 0 L 22 * * * 6583 * * 6444 2808 * 972 3670 5326 * * * 5550 3910 3328 * 4865 22 0 * * * * * * 7529 0 0 N 23 3902 * 3057 3250 * 4429 5850 5835 2363 4869 * 3943 * 3398 3014 3252 6750 * * * 23 0 * * * * * * 7529 0 0 D 24 1587 * 3781 * * 4126 6580 6311 6835 * 6578 3163 * 5484 6479 1601 5645 * * * 24 36 5348 * 1000 1000 * * 7529 1519 0 N 25 5866 * 6410 * * 306 6858 * 4626 * * 3748 * * 4702 * * * * * 25 0 * * * * * * 7529 0 0 I 26 5508 * * 6123 4733 * * 1655 5537 2865 3388 * * * 4718 * 6258 1807 * 5838 26 0 * * * * * * 7529 0 0 P 27 5341 * 4573 * * 5593 4553 * 5940 6777 6939 3129 1269 5392 5919 2452 3753 6659 * * 27 0 * * * * * * 7529 0 0 L 28 5024 * * * 4763 * * 1853 * 1340 4637 * 5024 * * 5372 5637 2859 * 7063 28 0 * * * * * * 7529 0 0 Y 29 5155 * 3797 4061 6757 4949 6314 3049 4173 2794 6648 4428 4937 4324 4757 4103 3432 3663 * 4068 29 0 * * * * * * 7529 0 0 D 30 4810 * 2534 2146 5706 6389 * * 3271 6453 * 4397 6762 2546 3698 5837 3703 5615 * * 30 0 * * * * * * 7529 0 0 A 31 809 5156 * * * 4334 * 4413 * 6142 * * * * * 2071 4880 5770 * * 31 18 * 6314 * * * * 7529 0 0 L 32 * 6243 * * 4252 * * 3293 * 550 4732 * * * * * 5558 3907 * 5381 32 14 * 6674 * * 0 * 7511 0 1000 N 33 3995 * 3151 2283 6433 4536 6248 5389 4188 5411 * 3466 6685 3933 3177 4377 3720 5186 6487 6598 33 54 5191 6741 740 1317 * 0 7520 1577 1000 K 34 3955 6545 4668 3357 6296 5322 6309 2441 4246 2111 4453 * * 6108 4773 5741 3876 4047 * 5319 34 111 6817 3933 0 * * 0 7521 1000 1655 I 35 4517 6045 * * 6918 4784 * 2928 * 1454 3132 * * 6050 6197 4590 5503 2366 * * 35 83 6298 4535 1585 585 * 0 7481 1000 3917 Q 36 2622 5400 * 2905 5495 5379 5299 3713 4231 3654 6412 * * 3161 3790 3701 3929 5895 * 4489 36 103 5285 4541 1851 468 2637 253 7434 1610 4586 N 37 4899 6220 2821 2349 * 5580 5963 * 2661 6070 6553 3259 5964 4422 4516 2731 4914 * * * 37 180 4003 4184 1360 712 1086 919 7433 2755 4955 E 38 3485 6656 3801 3054 * 5432 4961 4594 6627 5159 5230 4420 * 2748 4724 3091 3007 4826 * 4763 38 76 6098 4775 0 * 1593 581 7443 1000 4702 G 39 2921 * 4976 3797 4598 2719 * 4110 5648 3400 * 4031 * 4733 4299 3509 3609 4183 * 5369 39 46 * 4985 * * 2489 283 7441 0 4519 V 40 4754 * 3365 2614 5023 2919 5448 4994 3979 6397 6880 4054 4952 3405 4359 3620 4293 6438 * 5507 40 64 6061 5141 3170 170 1093 913 7440 1000 4640 G 41 4415 * 3728 5524 6600 2783 5354 * 2658 5087 * 2162 6733 * 3183 3227 5582 * * 5851 41 90 5973 4487 0 * 1211 816 7459 1000 4204 I 42 4320 * 4863 5089 * 6146 6170 3756 2349 3203 6328 6735 2849 5363 3455 4875 3700 3441 * * 42 142 * 3419 * * 1671 544 7483 0 4220 Y 43 4160 5692 * 3276 3802 3634 5627 5963 2997 3233 6316 * 3855 4865 3943 5342 3737 5344 * 3380 43 85 * 4132 * * 2715 238 7388 0 4812 D 44 * * 2986 * 4434 3853 3219 4741 4138 2853 * 3687 5119 6512 3322 3283 5095 5518 5216 5624 44 16 * 6502 * * 1989 419 7443 0 5077 K 45 3638 * 5181 4565 * 5287 3882 5577 2021 6038 * 4774 3648 2997 3199 3314 6419 6472 * * 45 204 * 2921 * * 951 1051 7451 0 4813 N 46 3028 * 4221 4495 * 6060 5378 3932 3705 4109 6429 4595 2480 6393 3984 3887 6456 2701 * * 46 85 5389 4918 1585 585 1582 587 7407 1626 5125 F 47 6444 5946 5307 6178 3038 5482 5344 2519 5465 2145 3606 * * 4857 5660 5949 6230 4067 4963 3579 47 35 6261 6480 3170 170 3652 120 7521 1000 4623 I 48 1682 * * 3713 * 5532 * 4244 2683 4805 * * * 4078 2912 4091 4855 5460 * 4713 48 51 5329 6623 2424 298 729 1333 7460 1684 4646 K 49 3724 7068 5133 2774 4378 5024 5540 4712 2153 4330 6493 5116 4863 3577 3815 4354 * 4668 6412 * 49 14 * 6695 * * 889 1120 7499 0 3475 S 50 2550 * 5741 4434 6772 6792 * 2436 5694 2690 * 5611 4712 5883 4764 3838 6607 2846 4904 5505 50 32 * 5498 * * 1010 990 7506 0 2613 I 51 4640 5510 * * 4453 * * 2431 5291 1221 5164 * * * 5305 5389 4961 3240 * 4739 51 0 * * * * 1929 439 7525 0 2560 E 52 4273 * 3919 2536 * 4354 6644 6561 3453 3666 6824 4374 * 3548 3298 3100 3761 6661 6736 5941 52 12 6927 * 0 * * 0 7526 1000 2220 L 53 3691 * 2625 2533 * 4869 * 5346 3313 5141 * 4476 6315 2932 3462 3515 6904 * * 5337 53 0 * * * * 0 * 7526 0 2220 I 54 3412 3192 5778 * * * * 1588 * 2826 3556 * * * * * 6644 2382 5809 * 54 67 * 4464 * * * * 7548 0 0 K 55 3758 * * 4829 * 4928 4674 2281 2991 3289 6728 5547 * 4890 2601 4426 6049 4732 * 4149 55 14 * 6645 * * * 0 7476 0 2819 D 56 3472 * 3544 2408 * * 6480 5577 3357 4074 5881 4040 * 3331 3362 3175 5099 6493 * 5565 56 26 * 5834 * * * 0 7530 0 3167 R 57 3235 6601 2824 3908 * 3106 5569 * 3857 5748 5552 3645 * 3938 3052 2609 * * * * 57 15 * 6594 * * 2664 248 7476 0 3529 X 58 5923 * 6053 6528 5340 5653 6078 1948 7851 1628 4990 * * 5428 * * * 1963 * * 58 0 * * * * 780 1260 7558 0 3548 K 59 4627 * 5509 2127 * 4941 4784 4586 2722 4388 5134 4302 * 4192 2788 3766 4671 7089 * * 59 0 * * * * 1534 611 7556 0 2112 S 60 3198 * 4624 2832 * 3431 6489 4656 3868 6121 5690 3330 * 3665 3708 2821 5062 5217 * 6494 60 0 * * * * 0 * 7554 0 1623 N 61 * * * * 5779 174 * * * * * 6782 * * 6753 5164 5603 5119 * * 61 0 * * * * * * 7555 0 0 S 62 3611 * 4945 2868 4900 3475 5186 6777 2501 4833 5242 4342 * 3869 4382 3266 5816 5130 * 4858 62 15 6618 * 3907 100 * * 7555 1000 0 S 63 3805 * 4257 4503 * 3471 6914 * 4393 6351 5568 * 3835 6180 4698 1438 2633 * * * 63 20 6202 * 0 * * * 7555 1000 0 L 64 6081 * * * 2099 * * 3087 * 973 4575 * * * * 5779 * 3957 * * 64 0 * * * * * * 7555 0 0 T 65 2836 * 5452 5183 5529 4933 3856 * 6147 * * 6651 6837 6777 7102 1083 3652 4903 * 4265 65 20 * 6164 * * * * 7555 0 0 D 66 3883 * 2676 2044 * 5583 * 5458 3278 4436 * 5459 * 3068 3942 4278 3964 5813 * * 66 15 6580 * 1000 1000 0 * 7528 1000 1000 A 67 773 6321 * * 6338 5596 * * 5779 6319 * 6435 5882 * * 1971 4957 5460 * * 67 52 5297 6639 1391 692 * * 7555 2243 0 L 68 5947 5214 * * 2418 * * 3949 * 1253 2416 * * 6039 * 6577 * 3788 * * 68 194 2994 * 1302 750 * 0 7546 4686 1000 T 69 2876 * 4917 2728 6212 5775 4753 6928 3604 4488 5141 4144 4235 3745 3330 3782 3666 6334 * * 69 279 2507 * 1136 876 0 * 7544 4921 1000 G 70 3779 * 5169 2854 * 2191 4419 * 3525 * * 3762 3703 3736 3422 3925 5396 * * * 70 301 2411 * 1260 780 * * 7551 5257 0 L 71 3917 6349 * * 3269 * 5321 2863 4561 2778 5484 6728 * * 4313 5073 5442 2996 2763 4065 71 223 2807 * 1211 816 * * 7551 4852 0 I 72 5395 6452 * * 1077 * * 3423 * 3012 6690 6778 * * * 6326 6838 2495 * 4151 72 14 6646 * 0 * * * 7551 1000 0 P 73 5636 * 3294 5777 * 3862 7113 * * * * 5048 922 6779 6791 3069 3501 * * * 73 0 * * * * * * 7551 0 0 D 74 3560 * 2753 3772 6708 5978 4548 5469 4128 5899 6728 4125 2559 4565 4712 2717 5172 6189 * 5749 74 0 * * * * * * 7551 0 0 K 75 3788 * 5296 3274 3771 6831 5559 3491 5120 2625 4391 5021 * 3601 5538 4158 3524 4298 * 4662 75 0 * * * * * * 7551 0 0 E 76 3517 5738 4314 2075 3287 * * 3776 * 3608 3414 * * * * 4779 4772 3353 * 3571 76 0 * * * * * * 7551 0 0 V 77 3934 * * 6326 6315 6335 6548 2207 * 2248 4944 * * 5242 5151 4213 4563 2076 * 4680 77 0 * * * * * * 7551 0 0 L 78 3190 * 5672 4506 6315 4198 5646 6516 4963 4629 3931 4446 6698 3381 4470 1874 3365 * * 5363 78 10 7151 * 0 * * * 7551 1000 0 X 79 4820 * * * 5016 7083 * 3665 * 1657 1728 * * 3963 * 5522 4516 3849 * 5084 79 0 * * * * * * 7552 0 0 I 80 * 6326 * * 6751 * * 1332 * 1757 4644 * * * * * 6457 2097 * * 80 0 * * * * * * 7551 0 0 N 81 2908 * 5437 3493 6035 5267 6236 6559 2877 5638 5382 4963 * 4281 2018 2832 5853 6775 * 6353 81 18 6326 * 1585 585 * * 7551 1000 0 V 82 1493 * * * 6130 * 5665 2444 * 4545 6907 5314 * * * 3533 3402 2722 6510 7113 82 0 * * * * * * 7551 0 0 A 83 2608 4863 * * * 425 * * * * * * * * * 4546 * 6145 * * 83 0 * * * * * * 7551 0 0 E 84 4986 * 3860 305 * * * 7178 * * 5591 * * 5039 * 5520 * 6581 * * 84 0 * * * * * * 7551 0 0 N 85 3597 * 6551 1754 * 6340 5501 6708 2994 4191 6976 4002 * 2601 3692 5256 5177 5683 * * 85 35 * 5382 * * * * 7551 0 0 S 86 2887 * * * * 5123 4395 * * 6330 7133 5485 * 6295 4919 1246 1840 * * * 86 0 * * * * 0 * 7516 0 1377 G 87 6674 * 6571 6350 * 112 * * * * * 5809 * * * 5354 * * * * 87 0 * * * * * * 7542 0 0 K 88 5520 6658 3478 3891 * 4474 4707 * 3037 6837 * 2605 * 3031 2679 3650 3741 * * * 88 0 * * * * * * 7542 0 0 I 89 * * 6704 * 7555 * * 3048 * 530 3638 * 5444 * * * 6675 4360 * 6657 89 14 6694 * 3322 152 * * 7531 1000 0 S 90 2525 * 2582 2690 * 4395 5318 5943 4516 * * * 3235 * 6604 2941 4472 4615 * 4671 90 15 6578 * 3322 152 * * 7409 1000 0 S 91 5696 * 3030 1290 * * * 6219 5347 5977 * 2819 * 3489 4575 4066 4801 5198 * * 91 0 * * * * * * 7372 0 0 G 92 1534 * * 5870 * 2265 * 4855 * * 3875 4123 * 4450 6091 4301 4430 3159 * * 92 0 * * * * * * 7023 0 0 I 93 * * * * 1850 * * 2908 * 1041 4493 * * * 5762 * * 4626 * * 93 28 5683 * 3322 152 * * 7023 1000 0 A 94 2979 * 3468 3593 3146 4802 5437 5332 2324 4070 * 5140 * 5444 4227 3084 * * * 5556 94 0 * * * * * * 6716 0 0 A 95 2505 * 3544 5482 * 5330 5643 5509 4008 4650 * 4086 * 3601 3872 2463 2901 * * 5504 95 0 * * * * * * 6716 0 0 I 96 3506 * * * * * * 1712 * 1367 4259 * * * * * * 2584 * * 96 56 4717 * 2585 263 * * 6609 1000 0 R 97 1792 * * 3628 * 4668 * * 3896 * * 4909 * 3626 3120 1933 * 4937 * * 97 0 * * * * * * 6185 0 0 K 98 * * * 2268 * * * * 1098 * * * * 2633 2982 4745 * * * * 98 0 * * * * * * 6185 0 0 N 99 4153 * * * * * 4127 * 1786 4020 3102 2536 * * * 2453 3983 * * * 99 0 * * * * * * 5381 0 0 I 100 * * * * * * * 2362 * 1549 3846 * * * * * * 1343 * * 100 0 * * * * * * 5098 0 0 I 101 * * * 2909 * * * 1435 2095 2877 * * * 2978 * * * * * * 101 0 * * * * * * 3891 0 0 D 102 * * 2781 * * 474 * * 2895 * * * * * * * * * * * 102 0 * * * * * * 3609 0 0 A 103 295 * * * * * * * * * 2435 * * * * * * * * * 103 0 * * * * * * 3275 0 0 D 104 * * 1000 1000 * * * * * * * * * * * * * * * * 104 0 * * 0 * * * 1685 0 0 //