HHsearch 1.5 NAME c4bhqA_ FAM FILE c4bhqA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4bhqA_.a3m DATE Sat Nov 23 08:26:22 2013 LENG 109 match states, 109 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.4374 1.0698 SEQ >ss_dssp CCCHHHHHHHHHHHSCCGGGCCSEEEEEEEEEECCHHHHHHHHHTTGGGGCCEEEEEEEEEEESSHHHHHHHHHHTTSCTTEEEEEEEEEEETTTTEEEE EEEEEEECC >sa_dssp EDDECDEDBDECCEDEDEEEEDCBBBDCBDEDEBDEECBCECCEEDBBEDCEADCBCCBDBBAECEDABDDCCEDCEECEDCBBDDDCDDDCEEDECCDB CACBABCEE >ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECEECCCCCEEEE EEEEEEECC >ss_conf 9611003899998522468700489983140222810112111157327842699998413100489999999863068663133200110588714899 866543139 >Consensus xxxWsxxlAaFvxqiPxxggrxxValxsvxxxxxxxxxxxxlxqegxYxGKxVxxefxLxGxAxsqxxlVxFixAFEtspxFgixFqxxxxdxxxGxYTF sAsVGxvgx >c4bhqA_ AVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSREALVRFIRAFETSPRFGIEFQGASLDEGRGLYTF SARVGVTGG >UniRef50_C1XXL2(1-211:211) Fimbrial assembly protein (PilN) n=3 Tax=Thermaceae RepID=C1XXL2_9DEIN E=4e-58 s/c=0.48 id=57% cov=101% RVRWSDNIATFVNQIPRENGRFGVALRSIGASLRGQGNQPAPGGENLYDGKPVKVEFSLQGEALGQAQLVRFIEAFESSPRFGINFQQATLDPNRGLYTF SATVGMVeapqGG >UniRef50_Q9RW98(1-197:238) Putative uncharacterized protein n=1 Tax=Deinococcus radiodurans RepID=Q9RW98_DEIRA E=2e-72 s/c=0.67 id=38% cov=93% KTYWSNDLASFVERVPG-----NVVFSNVNMSTVAPGAEPSLA----YAGKPVTRQLDLTGSARSQEAIVGFLNAFETDSNFGVDFKGMQHDATNGIYTF TASIGVVGD >UniRef50_Q1IXL3(94-198:241) Type IV pilus assembly protein PilN n=2 Tax=Deinococcus RepID=Q1IXL3_DEIGD E=7e-33 s/c=1.30 id=41% cov=97% KTYWTNDLAAFAAQLPSGGG---VAITSMNIKALDSAALASLQQSGIYAGKNVVREFDLSGTARSQQSVVNFLNAFENSPNFAVNFRSLQREGDTGRYTF AASVGLVA- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 2027 * * * * * * * 1016 * * * * * 1943 * * * * * 1 0 * * * * * * 1987 0 0 V 2 * * * * * * * * * * * * * * * * 1016 984 * * 2 0 * * * * * * 1987 0 0 P 3 * * * * * * * * * * * * 2027 * 1943 * * * * 1016 3 0 * * * * * * 1987 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 1987 0 0 S 5 * * * * * * * * * * * * * * * 425 1969 * * * 5 0 * * * * * * 1987 0 0 Q 6 * * 1943 * * * * * * * * 1016 * 2027 * * * * * * 6 0 * * * * * * 1987 0 0 Y 7 * * 1016 * * * * * * * * 1943 * * * * * * * 2027 7 0 * * * * * * 1987 0 0 L 8 * * * * * * * 1943 * 434 * * * * * * * * * * 8 0 * * * * * * 1987 0 0 A 9 0 * * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1987 0 0 A 10 998 * * * * * * * * * * * * * * 2064 1943 * * * 10 0 * * * * * * 1987 0 0 F 11 * * * * 0 * * * * * * * * * * * * * * * 11 0 * * * * * * 1987 0 0 I 12 1969 * * * * * * 2027 * * * * * * * * * 1002 * * 12 0 * * * * * * 1987 0 0 N 13 1969 * * 2064 * * * * * * * 984 * * * * * * * * 13 0 * * * * * * 1987 0 0 Q 14 * * * * * * * * * * * * * 394 2064 * * * * * 14 0 * * * * * * 1987 0 0 I 15 * * * * * * * 984 * 1969 * * * * * * * 2064 * * 15 0 * * * * * * 1987 0 0 P 16 * * * * * * * * * * * * 0 * * * * * * * 16 0 * * * * * * 1987 0 0 R 17 * * * * * 2064 * * * * * * * * 984 1969 * * * * 17 394 * 2064 * * * * 1987 0 0 A 18 1667 * * 1605 * 1488 * * * * * * * * * * * * * * 18 0 * * * * * 0 1765 0 1000 G 19 * * * * * 575 * * * * * 1605 * * * * * * * * 19 0 * * * * * 0 1765 0 1000 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 636 * 1488 * * * 0 1765 0 1000 R 21 * * * * * * * * * * * * * * 0 * * * * * 21 0 * * * * * 0 1340 0 1386 L 22 * * * * 1000 * * * * 1000 * * * * * * * * * * 22 0 * * * * 1084 921 1340 0 1386 E 23 * * * 1612 * 1592 * * * * * 1552 * * * * * * * * 23 0 * * * * 0 * 1738 0 1000 V 24 * * * * * * * * * * * * * * * * * 0 * * 24 0 * * * * * * 1987 0 0 A 25 394 * * * * * * * * * * * * * * * * 2064 * * 25 0 * * * * * * 1987 0 0 L 26 * * * * 2064 * * 1969 * 984 * * * * * * * * * * 26 0 * * * * * * 1987 0 0 R 27 * * * * * * * * * * * * * * 984 2064 1969 * * * 27 0 * * * * * * 1987 0 0 S 28 * * * * * * * * * * * 2064 * * * 394 * * * * 28 0 * * * * * * 1987 0 0 V 29 * * * * * * * 1943 * * 1969 * * * * * * 1045 * * 29 0 * * * * * * 1987 0 0 S 30 * * * * * 1943 * * * * * 1016 * * * 2027 * * * * 30 0 * * * * * * 1987 0 0 A 31 984 * * * * * * 1969 * * 2064 * * * * * * * * * 31 0 * * * * * * 1987 0 0 R 32 * * * * * * * * 1969 * * * * * 2027 1002 * * * * 32 0 * * * * * * 1987 0 0 A 33 998 * * * * * * * * 1943 * * * * * * 2064 * * * 33 0 * * * * * * 1987 0 0 L 34 * * * * * * * * * 998 * * * * 1943 * * 2064 * * 34 0 * * * * * * 1987 0 0 S 35 2064 * 1969 * * 1943 * * * * * * * * * 2027 * * * * 35 0 * * * * * * 1987 0 0 E 36 * * * 2027 * * * * * * * * 2064 1943 * 1969 * * * * 36 0 * * * * * * 1987 0 0 E 37 1969 * * 2027 * 1002 * * * * * * * * * * * * * * 37 0 * * * * * * 1987 0 0 E 38 1016 * * 2027 * * * * * * * 1943 * * * * * * * * 38 0 * * * * * * 1987 0 0 A 39 2027 * * 2064 * * * * * 1969 * * * 1943 * * * * * * 39 0 * * * * * * 1987 0 0 A 40 998 * * * * * * * * * * * 1002 * * * * * * * 40 0 * * * * * * 1987 0 0 R 41 1943 * * * * * * * * * * * * * 2027 1016 * * * * 41 0 * * * * * * 1987 0 0 L 42 * * * * * * * * * 434 * * 1943 * * * * * * * 42 0 * * * * * * 1987 0 0 A 43 1045 * * * * 1943 * * * * * * * 1969 * * * * * * 43 394 * 2064 * * * * 1987 0 0 Q 44 * * * * * 1605 * * * * * * * 575 * * * * * * 44 0 * * * * * 0 1765 0 1000 E 45 * * * 636 * * * * * * * * * * * 1488 * * * * 45 0 * * * * * 0 1765 0 1000 G 46 * * * * * 575 * * * * * 1605 * * * * * * * * 46 0 * * * * * 0 1765 0 1000 T 47 * * * * * * * 1488 * 1605 * * * * * * 1667 * * * 47 0 * * * * 0 * 1765 0 1000 Y 48 * * * * * * * * * * * * * * * * * * * 0 48 0 * * * * * * 1987 0 0 D 49 1016 * 984 * * * * * * * * * * * * * * * * * 49 0 * * * * * * 1987 0 0 G 50 * * * * * 0 * * * * * * * * * * * * * * 50 0 * * * * * * 1987 0 0 K 51 * * * * * * * * 0 * * * * * * * * * * * 51 0 * * * * * * 1987 0 0 R 52 * * * * * * * * * * * 1969 1002 * 2027 * * * * * 52 0 * * * * * * 1987 0 0 I 53 * * * * * * * 2027 * * * * * * * * * 406 * * 53 0 * * * * * * 1987 0 0 R 54 * * * * * * * * 1943 * * * * * 2027 * 2064 1969 * * 54 0 * * * * * * 1987 0 0 V 55 * * * * * * * * * * * * * * 1016 * * 984 * * 55 0 * * * * * * 1987 0 0 E 56 * * * 394 * * * * * * * * * 2064 * * * * * * 56 0 * * * * * * 1987 0 0 F 57 * * * * 394 * * * * 2064 * * * * * * * * * * 57 0 * * * * * * 1987 0 0 A 58 2027 * 1016 * * * * * * * * * * * * 1943 * * * * 58 0 * * * * * * 1987 0 0 L 59 * * * * * * * * * 0 * * * * * * * * * * 59 0 * * * * * * 1987 0 0 Q 60 * * * * * * * * * * * * * 984 * 1969 2064 * * * 60 0 * * * * * * 1987 0 0 G 61 * * * * * 0 * * * * * * * * * * * * * * 61 0 * * * * * * 1987 0 0 E 62 * * * 984 * * * * * * * * * * * 2064 1969 * * * 62 0 * * * * * * 1987 0 0 A 63 0 * * * * * * * * * * * * * * * * * * * 63 0 * * * * * * 1987 0 0 L 64 * * * * * * * * * 984 * * * * 1016 * * * * * 64 0 * * * * * * 1987 0 0 S 65 * * * * * 1943 * * * * * * * * * 434 * * * * 65 0 * * * * * * 1987 0 0 R 66 * * * * * * * * * * * * * 406 2027 * * * * * 66 0 * * * * * * 1987 0 0 E 67 1943 * * 1045 * * * * * * * * * 1969 * * * * * * 67 0 * * * * * * 1987 0 0 A 68 1045 * * * * * * * * * * * * 1943 * 1969 * * * * 68 0 * * * * * * 1987 0 0 L 69 * * * * * * * 2064 * 984 * * * * * * * 1969 * * 69 0 * * * * * * 1987 0 0 V 70 * * * * * * * * * * * * * * * * * 0 * * 70 0 * * * * * * 1987 0 0 R 71 * * * * * 2064 * * * * * 1969 * * 984 * * * * * 71 0 * * * * * * 1987 0 0 F 72 * * * * 0 * * * * * * * * * * * * * * * 72 0 * * * * * * 1987 0 0 I 73 * * * * * * * 984 * 1016 * * * * * * * * * * 73 0 * * * * * * 1987 0 0 R 74 * * * 1943 * * * * * * * 1016 * * 2027 * * * * * 74 0 * * * * * * 1987 0 0 A 75 0 * * * * * * * * * * * * * * * * * * * 75 0 * * * * * * 1987 0 0 F 76 * * * * 0 * * * * * * * * * * * * * * * 76 0 * * * * * * 1987 0 0 E 77 * * * 0 * * * * * * * * * * * * * * * * 77 0 * * * * * * 1987 0 0 T 78 * * * * * * * * * * * 1969 * * * 1943 1045 * * * 78 0 * * * * * * 1987 0 0 S 79 * * 2064 * * * * * * * * * * * * 394 * * * * 79 0 * * * * * * 1987 0 0 P 80 * * * * * * * * * * * * 394 * * 2064 * * * * 80 0 * * * * * * 1987 0 0 R 81 * * * * * * * * * * * 1016 * * 984 * * * * * 81 0 * * * * * * 1987 0 0 F 82 * * * * 0 * * * * * * * * * * * * * * * 82 0 * * * * * * 1987 0 0 G 83 1969 * * * * 425 * * * * * * * * * * * * * * 83 0 * * * * * * 1987 0 0 I 84 * * * * * * * 984 * * * * * * * * * 1016 * * 84 0 * * * * * * 1987 0 0 E 85 * * 2064 2027 * * * * * * * 956 * * * * * * * * 85 0 * * * * * * 1987 0 0 F 86 * * * * 0 * * * * * * * * * * * * * * * 86 0 * * * * * * 1987 0 0 Q 87 * * * * * * * * 2064 * * * * 984 1969 * * * * * 87 0 * * * * * * 1987 0 0 G 88 * * * * * 1045 * * * * * * * 1943 * 1969 * * * * 88 0 * * * * * * 1987 0 0 A 89 984 * * * * * * * * 1969 2064 * * * * * * * * * 89 0 * * * * * * 1987 0 0 S 90 * * * * * * * * * * * * * 1016 * 2027 1943 * * * 90 0 * * * * * * 1987 0 0 L 91 * * * * * * 2064 * * 984 * * * * 1969 * * * * * 91 0 * * * * * * 1987 0 0 D 92 * * 425 1969 * * * * * * * * * * * * * * * * 92 0 * * * * * * 1987 0 0 E 93 2064 * * 2027 * 1969 * * * * * * 1943 * * * * * * * 93 0 * * * * * * 1987 0 0 G 94 * * 1969 * * 2027 * * * * * 1943 * * * * 2064 * * * 94 0 * * * * * * 1987 0 0 R 95 * * * * * * * * * * * 2064 * * 984 * 1969 * * * 95 0 * * * * * * 1987 0 0 G 96 * * * * * 0 * * * * * * * * * * * * * * 96 0 * * * * * * 1987 0 0 L 97 * * * * * * * 2064 * 984 * * * * 1969 * * * * * 97 0 * * * * * * 1987 0 0 Y 98 * * * * * * * * * * * * * * * * * * * 0 98 0 * * * * * * 1987 0 0 T 99 * * * * * * * * * * * * * * * * 0 * * * 99 0 * * * * * * 1987 0 0 F 100 * * * * 0 * * * * * * * * * * * * * * * 100 0 * * * * * * 1987 0 0 S 101 1969 * * * * * * * * * * * * * * 984 2064 * * * 101 0 * * * * * * 1987 0 0 A 102 0 * * * * * * * * * * * * * * * * * * * 102 0 * * * * * * 1987 0 0 R 103 * * * * * * * * * * * * * * 2027 1016 1943 * * * 103 0 * * * * * * 1987 0 0 V 104 * * * * * * * 2064 * * * * * * * * * 394 * * 104 0 * * * * * * 1987 0 0 G 105 * * * * * 0 * * * * * * * * * * * * * * 105 0 * * * * * * 1987 0 0 V 106 * * * * * * * * * 1969 1943 * * * * * * 1045 * * 106 0 * * * * * * 1987 0 0 T 107 * * * * * * * * * * * * * * * * 2027 406 * * 107 434 1943 * 2000 415 * * 1987 1000 0 G 108 1969 * * * * 425 * * * * * * * * * * * * * * 108 0 * * * * * * 1987 0 0 G 109 * * 1552 * * 602 * * * * * * * * * * * * * * 109 0 * * 0 * * * 1738 0 0 //