HHsearch 1.5
NAME  c3zljD_
FAM   
FILE  c3zljD_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c3zljD_.a3m 
DATE  Sat Jul 20 08:38:28 2013
LENG  31 match states, 31 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.4648  3.2693 
SEQ
>ss_dssp
CGGGHHHHHCCGGGSCHHHHHHHHHHHHHHC
>sa_dssp
EEBEECDEECDEEDCEEEDDEEDEEECEEEE
>ss_pred
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
>ss_conf
9078888607834379899999999998519
>Consensus
spavealexldpxslxprqalewiyrlkxxv
>c3zljD_
SPAVEALENLDPRSLTPRQALEWIYRLKSLV
>UniRef50_P47763(8-38:38) DNA mismatch repair protein mutS (Fragment) n=1 Tax=Yersinia enterocolitica RepID=MUTS_YEREN  E=4e-06 s/c=1.69 id=81% cov=103%
SPAVEALESLDPDSLSPRQALEWIYRLKNMV
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
S 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	1
       0	*	*	*	*	*	*	1118	0	0	

P 2    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1118	0	0	

A 3    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1118	0	0	

V 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	4
       0	*	*	*	*	*	*	1118	0	0	

E 5    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1118	0	0	

A 6    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1118	0	0	

L 7    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1118	0	0	

E 8    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1118	0	0	

N 9    *	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	1000	*	*	*	*	9
       0	*	*	*	*	*	*	1118	0	0	

L 10   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1118	0	0	

D 11   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1118	0	0	

P 12   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1118	0	0	

R 13   *	*	1000	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	13
       0	*	*	*	*	*	*	1118	0	0	

S 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	14
       0	*	*	*	*	*	*	1118	0	0	

L 15   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1118	0	0	

T 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	16
       0	*	*	*	*	*	*	1118	0	0	

P 17   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1118	0	0	

R 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	18
       0	*	*	*	*	*	*	1118	0	0	

Q 19   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1118	0	0	

A 20   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1118	0	0	

L 21   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1118	0	0	

E 22   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1118	0	0	

W 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	23
       0	*	*	*	*	*	*	1118	0	0	

I 24   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1118	0	0	

Y 25   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	25
       0	*	*	*	*	*	*	1118	0	0	

R 26   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	26
       0	*	*	*	*	*	*	1118	0	0	

L 27   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1118	0	0	

K 28   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1118	0	0	

S 29   *	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	1000	*	*	*	*	29
       0	*	*	*	*	*	*	1118	0	0	

L 30   *	*	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1118	0	0	

V 31   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	31
       0	*	*	0	*	*	*	1118	0	0	

//