HHsearch 1.5 NAME c3zhiA_ FAM FILE c3zhiA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zhiA_.a3m DATE Sat Jan 11 09:37:30 2014 LENG 73 match states, 73 columns in multiple alignment FILT 115 out of 2030 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4224 0.3841 SEQ >ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHC >sa_dssp EDDBAEDADEBBEEDECECECACDEAEDCCEECEBEBDEEBADBABDCEDEBDEECBCAABDBAECDDECADE >ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC >ss_conf 9759999999999447779999998521100012685999999999552002389999999993899999659 >Consensus KxxfxxRlkxxrxxxglsqxelaxxxxxxxxxxxlgisxxtisxxexgxxxPxxxxlxxlaxxlxVsxxwLlG >c3zhiA_ KTDTSNRLKQIMAERNLKQVDILNLSIPFQKKFGIKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLMG >UniRef50_C2LHM7(7-77:245) Phage repressor protein n=3 Tax=Proteus RepID=C2LHM7_PROMI E=3e-07 s/c=0.79 id=22% cov=99% KLAFTKRLQEACLDSGIAGRGLGKRITEALAKQGIKVSAPAVWKWLNGESVPDSTNILALSQWLDVRAEWL-- >UniRef50_C9A1I6(19-85:252) Predicted protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A1I6_ENTGA E=7e-07 s/c=0.83 id=21% cov=93% KEKIGTRIRNIRITLNKTMVEFGEMLSPDE-----PVAQSIISRWERGISVPNNDRLKKIAEIGNVSTYYLL- >UniRef50_A6AMM3(2-72:244) Helix-turn-helix domain protein n=2 Tax=Vibrio harveyi RepID=A6AMM3_VIBHA E=4e-06 s/c=0.74 id=18% cov=89% ETNFSQHLRITRKRRGWSQRELVERLRHFPFSLFVGLDVNALSRWESEKVQPTAERMVQILRVL--------- >UniRef50_D0Z3D3(17-83:238) Phage repressor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z3D3_LISDA E=1e-05 s/c=0.76 id=22% cov=89% -----DRIKERRQALELTQEELAQKVAKI--VTDMKFSRVSLSNIELGVQNSVKDKvLLALSNFLKCTPEWL-- >UniRef50_D1B977(2-62:117) Transcriptional regulator, XRE family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B977_THEAS E=0.0001 s/c=0.79 id=25% cov=33% ----------------------------------------------SNRRRPSMDLLERLAEALDVTVA---- >UniRef50_Q1WRQ5(2-72:136) Transcriptional regulator, Cro/CI family n=2 Tax=Lactobacillus salivarius RepID=Q1WRQ5_LACS1 E=0.0003 s/c=0.65 id=18% cov=97% ---FPEKLRALRTGRGLSLAGLAKEMNEMEKGKQEKKNTGpQIGSWERGVNTPSYLEIIKLCRFFGVTPNFLIG >UniRef50_C7PQ31(8-63:250) Transcriptional regulator, XRE family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQ31_CHIPD E=0.0007 s/c=0.81 id=22% cov=44% ------------------------------------IKRSLLGAYEEERAEPRTEVLELVSDMFRIS------ >UniRef50_D2KRD6(10-72:114) Putative uncharacterized protein n=1 Tax=Lactobacillus phage phiPYB5 RepID=D2KRD6_9CAUD E=0.0009 s/c=0.71 id=23% cov=84% KEVMAQNIQHYMNEWGISRKELANK---------LGLSYTTLSSWLQADSYPRIDKIEKMANFFQISKA---- >UniRef50_B9JHC9(2-65:262) Putative uncharacterized protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JHC9_AGRRK E=0.0003 s/c=0.72 id=21% cov=47% ---------------------------------------STYRAHENGQNEFGPEIADRYAKKFGTTAGYLL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 3143 * * * * 528 * * * * 4056 2910 * * * * * 1 0 * * * * * * 6289 0 0 T 2 4951 * 4945 1994 * 6015 4776 5890 3962 4061 * 4505 5885 3367 5030 2849 2609 * * * 2 0 * * * * * * 6714 0 0 D 3 3306 * 3704 2787 * * * 3944 3243 * 6306 2307 * 4750 * 2738 3641 5335 * * 3 0 * * * * * * 6797 0 0 T 4 * * * * 1047 * * 2461 * 3548 3772 * * * 5721 * 4906 3415 5928 6243 4 0 * * * * * * 6906 0 0 S 5 1754 5287 * 6389 * 2183 * 5925 4848 * * 5513 5797 5163 5393 2158 3941 6178 * * 5 24 5934 * 0 * * * 6955 1000 0 N 6 3595 * 3147 1861 * * * 6576 3090 * * 3155 * 2952 4405 5099 4327 5453 * 6547 6 0 * * * * * * 7168 0 0 R 7 6466 * * 7207 * * 5870 6480 3105 5763 * 3155 * * 580 * 6596 5885 * 6566 7 0 * * * * * * 7198 0 0 L 8 6394 * * * 5597 * * 1392 * 1017 4145 * * * * * * 4814 * * 8 0 * * * * * * 7200 0 0 K 9 4373 7171 * 3897 * 6603 * 4402 1504 5334 * * * 3971 1648 5430 5421 6249 * * 9 0 * * * * * * 7200 0 0 Q 10 4261 * 5452 2081 3960 * 5590 4738 3116 4933 5828 4749 * 2444 3732 5539 5660 6697 * 4232 10 0 * * * * * * 7200 0 0 I 11 2117 5632 * * 5114 * * 2518 * 1657 7118 * * * 3962 4786 5886 4814 * 3866 11 20 * 6201 * * * * 7200 0 0 M 12 6116 4442 * * * * * 4355 6691 2980 2384 * * 6527 857 * * * * * 12 0 * * * * 0 * 7191 0 1000 A 13 3946 * 3757 2577 5670 * 6867 5625 1884 3931 6868 4266 * 3258 4246 5210 4143 7107 * * 13 0 * * * * * * 7203 0 0 E 14 4167 6583 3572 2258 5888 6225 6585 5902 3338 3888 6656 3585 * 3609 3114 4238 4863 5113 * 6647 14 0 * * * * * * 7203 0 0 R 15 3256 * 6778 * 6463 6696 4651 8550 2114 2669 6615 3876 * 4608 2264 3861 5517 * * 5933 15 51 4847 * 689 1396 * * 7203 1658 0 N 16 5998 * 5312 4730 * 935 4628 * 2742 * * 2654 * 6538 5511 5893 * * * * 16 0 * * * * * * 7203 0 0 L 17 * 7082 6656 6901 4471 6463 * 2602 5153 1208 3144 * * 6389 * * * 3887 4826 3956 17 21 * 6129 * * * * 7203 0 0 K 18 5234 * 5176 4926 * * * * 3352 6579 * 4171 5321 * 5688 1449 1563 * * * 18 64 * 4525 * * * 0 7173 0 1000 Q 19 5112 * 5800 5450 * 4274 5201 6537 5568 3711 4618 5740 4308 821 4424 * * 5585 * * 19 0 * * * * * 0 7076 0 2407 V 20 2735 * 4356 3404 * * 6624 6837 2414 5286 * 4609 * 4075 3352 3260 3628 3880 * 5447 20 0 * * * * * 0 7076 0 2407 D 21 4656 * 1976 1480 6282 4535 * * 4866 * * 5542 5215 3471 * 4498 4737 6351 * 5339 21 0 * * * * 1649 554 7076 0 2407 I 22 5460 * * * 2618 * * 3729 * 738 5163 * * * * 5272 * 3548 * * 22 0 * * * * 1652 553 7102 0 1863 L 23 1037 4777 * 6884 6242 3086 6745 5281 5967 4863 6531 6433 * * * 2927 * 3356 * * 23 42 * 5109 * * 914 1092 7164 0 1666 N 24 4956 * 2897 2037 * * * * 2388 4217 6335 3806 * 4180 2539 5652 6153 * * * 24 291 * 2455 * * * 0 7163 0 2637 L 25 4469 * * 4040 6312 * 4926 4678 1985 2452 4364 * * 3582 2486 5114 5743 5956 * * 25 598 6118 1622 0 * * 0 7009 1000 4330 S 26 3748 4761 * * 4599 3510 4975 3274 * 2579 3885 * * * 4814 4073 2180 3763 * * 26 484 * 1810 * * 3575 126 6686 0 5159 I 27 3395 * 3484 3795 4585 2513 4067 4132 3467 * * 3174 * 5027 3984 4209 5239 4865 * * 27 414 5209 2170 1000 1000 3906 100 6373 1000 5451 P 28 3929 * 4942 3740 3006 3840 4426 4790 3059 2732 * 4353 3780 4549 4487 * 4607 * * 5086 28 45 * 5019 * * 4374 71 6037 0 5703 F 29 4975 * 3238 5025 2988 * 4539 4409 * 2312 3803 4318 3758 * 4665 3290 4832 * * 4596 29 139 * 3448 * * 4450 68 6028 0 5650 Q 30 3123 * * 2412 4463 * * * 2665 3281 * 3216 4378 4488 4300 3496 4270 * * * 30 52 * 4829 * * 4180 82 5929 0 5877 K 31 3953 * 2965 * 4441 * 4339 3965 1901 4516 3820 3592 * * 2778 4759 * * * * 31 0 * * * * 4420 69 5956 0 5778 K 32 3258 * 3369 4911 * 4613 4366 * 2184 4870 * 4842 4568 3948 4380 4476 2824 4449 * * 32 122 * 3627 * * 3820 106 6060 0 5850 F 33 2704 * 4949 4963 3721 4561 5041 * 2858 3665 * 4988 * 4097 4006 3972 3754 * 4469 3614 33 54 * 4763 * * 1944 434 6087 0 5848 G 34 2536 * 2932 3590 3993 2318 6266 * 4189 4074 * 3290 * 5581 * 4028 5682 5716 * * 34 34 * 5435 * * 1127 883 6544 0 5542 I 35 * 4708 * 5949 6662 * 5238 2018 5134 1535 4386 4356 6310 * * * 4293 2960 * * 35 0 * * * * 744 1311 6869 0 4969 K 36 * * 3907 5207 * 1107 6363 * 2547 * * 4126 4046 5341 4620 4097 5869 * * * 36 23 5961 * 3170 170 1289 760 7053 1000 3730 L 37 6436 * * * 4166 * * 1667 5017 2686 4665 * * * * 6884 6580 1514 6265 6644 37 11 7100 * 0 * 2136 372 7205 1000 2846 S 38 3420 * 4771 6783 * 3719 6488 * 3939 * * 3328 4546 5418 7131 1557 2352 * * * 38 37 * 5302 * * * 0 7205 0 2493 K 39 5148 * * 5005 4504 5434 7206 4778 2506 5155 6571 * 3207 3037 2160 4707 4086 4937 * 4970 39 0 * * * * 1609 573 7286 0 2843 S 40 2696 * 6403 5286 * 3329 5807 * 4792 * 6966 4498 4717 3058 4910 1635 4450 4528 * * 40 14 6743 * 0 * * 0 6961 1000 2390 T 41 2461 * 6578 * * 5289 6450 5749 5606 6498 6130 5029 * 4486 4872 2751 1298 5589 * 5573 41 0 * * * * 936 1067 6961 0 2390 L 42 5514 * * * 5638 6321 * 1674 * 2186 4161 * * * * * * 1855 * 3644 42 0 * * * * * 0 7058 0 1389 S 43 3497 6497 * 6524 6583 3218 6381 5864 * 5912 * 4801 * 4299 4498 1046 4086 6463 5788 5490 43 0 * * * * 0 * 7058 0 1389 A 44 4448 * 3586 5455 * 4566 5613 * 2567 7033 6421 2680 * 3372 2246 3490 6246 * * 4978 44 0 * * * * * * 7058 0 0 Y 45 6243 * * * 5529 * 6248 3221 * 3402 5466 * * * * * 6749 5823 1384 1656 45 0 * * * * * * 7058 0 0 V 46 * 5070 * 708 4617 * * 4523 4961 2995 5786 * * * 5850 6895 * 3790 * * 46 22 6951 7088 1585 585 * * 7058 1000 0 A 47 4431 6606 5555 5709 * * 5710 * 3145 5114 * 1450 * 5768 3402 3215 2865 6412 * 7285 47 16 6511 * 0 * * 0 7056 1000 1000 S 48 3821 * 4621 3685 * 671 * * 5279 * * 3431 6434 * * 5078 6405 * 6459 * 48 24 5913 * 0 * 0 * 6986 1688 1000 V 49 4238 * 4189 3418 * 5048 * 4302 1993 3859 * 4485 * 4571 2810 5207 3653 4184 * 7245 49 12 6963 * 1000 1000 * * 6987 1000 0 Q 50 4854 6567 * 6443 6360 5957 6703 4326 4905 5523 5481 2878 6903 5008 2561 2456 2509 4099 * 5894 50 11 6990 * 0 * * * 6987 1000 0 S 51 5237 * 6631 2205 6406 * 6960 4187 3292 3789 3983 4269 * 4206 4389 3636 3041 4528 * 4835 51 73 5837 4958 2026 406 * * 6987 1533 0 P 52 5137 * * * 6186 * * 4524 6522 4207 * 5532 401 * * 6220 5703 4718 * * 52 30 5602 * 0 * 0 * 6968 1570 2155 D 53 6417 * 3366 6443 * 3587 6855 6760 2891 6936 * 3849 3685 6006 3023 2367 2803 6293 * * 53 11 7069 * 0 * * * 6987 1000 0 Q 54 3319 * 7127 4607 4722 5714 5678 2820 4394 3120 3803 5067 3262 5514 4473 3664 5451 4163 * 4619 54 0 * * * * * * 6987 0 0 N 55 4295 * 1972 2206 7040 6243 * 6126 3849 5210 * 4713 4861 4950 4432 3033 4049 * * 6381 55 0 * * * * * * 6987 0 0 R 56 4436 * 6607 4812 4127 * 4746 4022 2313 4226 3989 3766 * 5192 4624 * 2484 3591 * 5010 56 19 6293 * 0 * * * 6987 1000 0 I 57 3752 * * * 6112 * * 1941 * 1063 4215 * * * * * 5492 3796 5365 * 57 0 * * * * * * 6987 0 0 Y 58 3434 6702 5373 2654 4943 7043 * 3569 3802 3020 7135 5111 4998 3609 4387 4671 4561 3551 * 4986 58 0 * * * * * * 6986 0 0 L 59 2535 * 4809 4406 * 5190 * 4530 2307 3164 6869 4909 6556 3933 3199 5090 3550 5742 * * 59 0 * * * * * * 6986 0 0 L 60 * * * * 4192 * * 1474 * 1268 4100 * * * * * * 3768 6556 5180 60 9 7309 * 0 * * * 6986 1000 0 A 61 783 3290 * * * 6912 6642 6634 6359 5940 6103 * 5658 * * 2481 6551 5689 * 5958 61 0 * * * * * * 6986 0 0 K 62 4313 * 2520 2783 * 5912 6268 6100 2364 6591 * 3468 6413 3656 3664 4488 4536 5461 * 6582 62 0 * * * * * * 6986 0 0 T 63 2550 6634 * 4321 2663 7055 5657 3239 4990 3664 6545 5596 * 7134 6935 6802 3989 3235 4496 3344 63 0 * * * * * * 6986 0 0 L 64 * * * * 1553 5751 * * * 945 6357 * * * * 5957 4584 * * 4291 64 28 5693 * 0 * * * 6986 1634 0 G 65 6160 * 2845 5162 * 1568 5226 * 3931 * * 1862 * 4679 4431 5110 * * * * 65 0 * * * * * * 6981 0 0 V 66 5300 3495 * * * 6526 * 2602 5930 5464 * * * * * 6931 4001 736 * * 66 0 * * * * * * 6966 0 0 S 67 6697 * 2440 4762 * * * * 5540 * * 2640 5780 * 5853 1482 2652 6719 6342 6271 67 0 * * * * * * 6910 0 0 E 68 3487 * * 4177 * 6196 * 3386 4121 2821 5198 * 1997 6500 7375 6491 3853 2647 * 6313 68 0 * * * * * * 6970 0 0 A 69 3071 4894 1982 2589 * 5181 4534 * 5749 6360 6340 3619 5116 * * 2931 4684 5536 * 6336 69 0 * * * * * * 6613 0 0 W 70 * * 4630 4088 3879 * * * 6520 * * * * 5763 * * * 6137 1042 1720 70 0 * * * * * * 6610 0 0 L 71 * * * * 5367 * * 3686 * 171 6669 * * * * * * * * * 71 27 5758 * 0 * * * 6845 1000 0 M 72 5997 * * * 4663 * * 3342 5303 855 2852 * * 4528 5074 * 5129 5165 * * 72 0 * * * * * * 6391 0 0 G 73 * * * * * 0 * * * * * * * * * * * * * * 73 0 * * 0 * * * 5342 0 0 //