HHsearch 1.5 NAME c3zeyZ_ FAM FILE c3zeyZ_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zeyZ_.a3m DATE Sat Feb 16 08:37:49 2013 LENG 68 match states, 68 columns in multiple alignment FILT 20 out of 24 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4454 1.1909 SEQ >ss_dssp CCCCEEEEEEEEEECSSSSCEEEEEEEESCCTTSCSSCCEEEEEEESSCCTTCEEECSSTTCCCCCCC >sa_dssp EDDBDABBCDCCCECDEEDECBCADADADDCEEDEECECDACBBBECEDEDDDEDDBEDBEDECEEDE >ss_pred CCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCEEECCEEEEEECCHHHHCCC >ss_conf 96236668877621267470799999985046787547166554258723364887600250410379 >Consensus xxxxxaeVikVlgrtGxxGxxtQVrvxxlxxxxgxdxxrxixRNVkGPVrxGDIlxLxEtErEarrlr >c3zeyZ_ DQAQVGVIIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLSLMETEREARRLR >UniRef50_UPI0000E1F04D(231-286:286) PREDICTED: similar to 40S ribosomal protein S28 n=2 Tax=Pan troglodytes RepID=UPI0000E1F04D E=7e-07 s/c=0.98 id=49% cov=84% -------VTKLLGRTGSKGQWSQVCMEFME-----DASCSIIHNVKGPVYEGDVLTLLQSEPEVGRLR >UniRef50_C7DI36(25-89:91) Ribosomal protein S28e n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI36_9EURY E=5e-11 s/c=1.05 id=37% cov=91% ----LAEIVEVnrVSKTGMYGEVYSVTCRILE---GKDKGRIIRRNSIGPIKIGDIIRLPDTSREAREIK >UniRef50_Q3IPM8(11-72:75) 30S ribosomal protein S28e n=24 Tax=Archaea RepID=RS28_NATPD E=7e-10 s/c=1.05 id=42% cov=88% --ATPAEVIEVVGETGMHGEAMQVKCRI---QEGENQGRIIARNVLGPVRVGDVIQLRETAREA---- >UniRef50_B4KI73(7-56:65) GI17640 n=2 Tax=Drosophila RepID=B4KI73_DROMO E=0.0003 s/c=0.92 id=40% cov=71% -------VVKVLGRVGARGLFTEVRVELLKFPRM-----QLLKAVKGPVRLGDIIDIKD--------- >UniRef50_D2EFI9(22-85:85) Ribosomal protein S28e n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFI9_9EURY E=3e-11 s/c=1.09 id=45% cov=88% ------EVIEIVGRHGVAGEVTQVRCKVLA---GMDKDKIIRRNVRGPVVIGDVLMLKETEMEAMPIR >UniRef50_Q8SQM2(5-65:65) 40S RIBOSOMAL PROTEIN S28 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQM2_ENCCU E=9e-10 s/c=1.06 id=50% cov=91% -QEFFGEVTHVLGRTGGSGLLTQVKMELM------HNKRTIQRAVKGPVAVGDIIEILECEREHRRTR >UniRef50_Q3LVV1(8-64:65) Ribosomal protein S28 n=1 Tax=Bigelowiella natans RepID=Q3LVV1_BIGNA E=1e-06 s/c=0.95 id=44% cov=79% ------IVTKILKKVGKRGQGTQVRVKSIT-----NIKKTLIRNIKGPVRIGDIVLLKESEREA---- >UniRef50_A8DYY3(6-59:76) CG34182 n=11 Tax=Sophophora RepID=A8DYY3_DROME E=7e-05 s/c=0.90 id=40% cov=81% --ASKARVIKILNRIGARGILTEVRVQLVDQPKM-----QFMRTVKGPVRLGDIVDFEDTE------- >UniRef50_Q8U159(4-68:71) 30S ribosomal protein S28e n=5 Tax=cellular organisms RepID=RS28_PYRFU E=2e-10 s/c=1.02 id=47% cov=97% DEGYPAEVIEIIGRTGTTGDVTQVKVRILE---GRDKGRVIRRNVRGPVRIGDILILRETEREAREIK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 0 * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1414 0 0 Q 2 * * * 1585 * * * * * * * * * 585 * * * * * * 2 0 * * * * * * 1681 0 0 A 3 660 * * 2402 * 2491 * * * * * * * * * * * * * * 3 0 * * * * * * 2224 0 0 Q 4 * * * * 2402 * * * * * * * * 2230 * 2186 2322 * * 2491 4 0 * * * * * * 2224 0 0 V 5 * * * * 2612 * * * 2356 2542 * * 1802 * * * * 2453 * * 5 0 * * * * * * 2363 0 0 G 6 613 * * * * 1530 * * * * * * * * * * * * * * 6 0 * * * * * * 2363 0 0 V 7 * * * 664 * * * 3216 * * * * * * 2883 * * 2992 * * 7 0 * * * * * * 2585 0 0 I 8 * * * * * * * 2334 * * * * * * * * * 319 * * 8 0 * * * * * * 2807 0 0 I 9 * * * 4324 * * * 1116 * * 3375 * * * * * 2009 2797 * * 9 0 * * * * * * 2807 0 0 K 10 * * 3048 2128 * * 4121 * 1041 * * * * 3847 4742 * * * * * 10 0 * * * * * * 2807 0 0 V 11 * * * * * * * 1498 * 3960 * * * * * * * 782 * * 11 116 3693 * 1000 1000 * * 2807 1000 0 L 12 * * * * * * * 2910 * 569 * * * * * * * 2376 * * 12 0 * * * * * * 2807 0 0 G 13 * * 4917 * * 427 * * 4057 * * 3541 * * * 3693 * * * * 13 0 * * * * * * 2807 0 0 R 14 * * * 3993 * * * * 2339 * * 4044 * * 559 * * * * * 14 0 * * * * * * 2807 0 0 T 15 * * * * * * 4250 3541 * * * * * * * * 444 2981 * * 15 0 * * * * * * 2807 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 2807 0 0 S 17 2713 * * * * 4121 * * 4057 * 2317 * * * * 1430 4793 3034 * * 17 0 * * * * * * 2807 0 0 R 18 4250 * * * * * 2646 * 3960 * * * * 3936 1139 4121 3854 * * 3693 18 0 * * * * * * 2807 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 2807 0 0 N 20 * * 4793 1631 * 2468 * 3541 * 3011 * 4041 * 2398 * * * * * * 20 0 * * * * * * 2807 0 0 V 21 3019 3936 * * 3909 4057 * 4052 * 2802 * * * * * * * 1263 3960 * 21 0 * * * * * * 2807 0 0 T 22 * * * * * * * 3534 * * 3993 * * * * 3001 624 * * 3693 22 0 * * * * * * 2807 0 0 Q 23 * * * 2713 * * * * * * * * * 377 * 3693 * * * * 23 0 * * * * * * 2807 0 0 V 24 * * * * * * * 4044 * * * * * * * * * 90 * * 24 0 * * * * * * 2807 0 0 R 25 * 3960 * * * * * * 2378 * * * * 4044 724 * 3693 * * * 25 0 * * * * * * 2807 0 0 V 26 * 1981 * * * * * * * * 3038 * * * * * * 678 * * 26 0 * * * * * * 2807 0 0 R 27 * * * 1625 * * * * 3150 * * * * 2880 1446 * * 4052 * * 27 0 * * * * * * 2807 0 0 L 28 * * * * 1999 * * 2505 * 1595 * * * * * 4057 * 2453 * * 28 94 * 3993 * * * * 2807 0 0 M 29 * * * * * * * 2979 * 1087 1673 * * * * * * 3493 * * 29 201 * 2941 * * * 0 2742 0 1000 A 30 2886 * 3412 1228 * 4299 * * 3596 * * * * * * 2868 3766 * * * 30 1467 * 648 * * * 0 2687 0 1665 E 31 * * * 1313 2404 2225 * * * * * * * 2361 * * * * * * 31 0 * * * * 3260 159 1886 0 2389 E 32 * * * 1565 * * * * * * * * 1649 1543 * * * * * * 32 489 * 1798 * * * 0 2177 0 2427 G 33 * * * 1770 * 1851 * * 2209 * * * * * 2230 * * * * * 33 0 * * * * 853 1164 2040 0 2424 S 34 * * * * * 707 * * * * 2268 * * * * 2477 * * * * 34 336 * 2268 * * 2200 354 2550 0 1768 P 35 * * 2868 2445 * * * * 2244 * 3349 * 3217 * 1929 * * * * * 35 0 * * * * 816 1210 2211 0 2150 E 36 * * 866 2710 * * 3595 * * 3944 * 2728 * * * * * * * * 36 0 * * * * * 0 2478 0 1596 A 37 2125 * * 3820 * * * 3765 1532 * * 3595 * 3692 * * 3054 * * * 37 0 * * * * 1438 664 2478 0 1596 N 38 * * 3980 * * 1076 * * 2716 * * 3070 * * * 2388 * * * * 38 0 * * * * * 0 2473 0 1304 R 39 * 3664 * * * * * * 2923 * * * * * 341 * * * * * 39 0 * * * * 0 * 2481 0 1304 T 40 * * * * * * * 2174 * * * * * 2035 * 2497 2135 2947 * * 40 0 * * * * * * 2816 0 0 I 41 * * * * 3553 * * 754 * 1636 * * * * * * * * * * 41 0 * * * * * * 2816 0 0 V 42 4020 * * * * * * 1505 * 3927 3553 * * 4175 2619 * 2980 3470 * * 42 0 * * * * * * 2816 0 0 R 43 * * * * * * 3979 * 3927 * * * * * 200 * * * * * 43 0 * * * * * * 2816 0 0 N 44 3046 * * * * * * * * * * 333 * * * * 3553 * * * 44 0 * * * * * * 2816 0 0 V 45 * 4075 * * * * * 4082 * * * * * * * 3715 * 312 * * 45 0 * * * * * * 2816 0 0 K 46 * * * * * * * 3715 715 3368 5443 * * * 2883 * * 4075 * * 46 0 * * * * * * 2816 0 0 G 47 * * * * * 0 * * * * * * * * * * * * * * 47 0 * * * * * * 2816 0 0 P 48 4116 * * * * * * * * * * * 86 * * * * * * * 48 0 * * * * * * 2816 0 0 C 49 * 3109 * * * * * 3715 * * * * * * * * * 308 * * 49 0 * * * * * * 2816 0 0 K 50 4175 * * * * * * * 2548 * * * * * 602 * * 4279 * 3979 50 0 * * * * * * 2816 0 0 E 51 * * * 1910 * * * 1830 5443 2426 * * * * * * * 2038 * * 51 0 * * * * * * 2816 0 0 G 52 * * 4771 * * 103 * * * * * 4963 * * * * * * * * 52 0 * * * * * * 2816 0 0 D 53 * * 0 * * * * * * * * * * * * * * * * * 53 0 * * * * * * 2816 0 0 M 54 * * * * * * * 608 * * 4103 * * * * * 5443 1929 * * 54 0 * * * * * * 2816 0 0 L 55 * * * * * * * 1950 * 832 * * * * * * * 2478 * * 55 0 * * * * * * 2816 0 0 S 56 4355 4771 2728 2878 * * * 3286 * 4082 3173 * * 4020 3715 4103 2977 4963 * * 56 0 * * * * * * 2816 0 0 L 57 * * * * 3553 * * 3046 * 333 * * * * * * * * * * 57 0 * * * * * * 2816 0 0 M 58 * * * 3553 * * * * 2504 1612 2549 * 3715 * 2607 * * * * * 58 0 * * * * * * 2816 0 0 E 59 * * 2139 495 * * * * * * * * * 3979 * * * * * * 59 0 * * * * * * 2816 0 0 T 60 * 2756 * * * * * * * * * * * * * 1891 780 * * * 60 0 * * * * * * 2756 0 0 E 61 3947 * * 332 * * * * * * * * * * * 2829 * * * * 61 0 * * * * * * 2756 0 0 R 62 * * * * * * * * * * 3950 * 3648 * 225 * * * * * 62 0 * * * * * * 2482 0 0 E 63 * * * 0 * * * * * * * * * * * * * * * * 63 0 * * * * * * 2482 0 0 A 64 251 * * * * * 3647 * * * * * * * * * * 3648 * * 64 0 * * * * * * 2482 0 0 R 65 * * * * * 3536 * * 3589 * 3512 * * * 429 * * * * * 65 0 * * * * * * 2341 0 0 R 66 * * * 2661 * * * * 2872 * * * 3512 * 695 * * * * * 66 0 * * * * * * 2341 0 0 L 67 * * * * * * * 1741 * 719 * * * * * * 3421 * * * 67 0 * * * * * * 2341 0 0 R 68 * * * * * * * * 2258 * * * * * 338 * * * * * 68 0 * * 0 * * * 2271 0 0 //