HHsearch 1.5 NAME c3rj1G_ FAM FILE c3rj1G_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3rj1G_.a3m DATE Sat Jul 30 09:44:23 2011 LENG 103 match states, 103 columns in multiple alignment FILT 61 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4675 1.4124 SEQ >ss_dssp CCHHHHHHHCCCSTTSSTTTHHHHCCCCSSSSSSTTTSHHHHSTTCCTTTTTCCSTTTTTTTTCSSSHHHHHTTTSCCCCSSSSSTTTHHHHHHHHHHHT TCC >sa_dssp ECDECDDEDDCDDEDCCDDCDEBDDDDEDECCDCCCCDCDCDDDEEEDDDECDDDECCDDDDDCEDCCDCCDCDDDDEEDDDDCDCDCDDDCDDDDDDCE DDE >ss_pred CCCHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH HHC >ss_conf 9401106898668999985277767534056988641567530789816998427889808999720247880206128999862477899999999998 729 >Consensus PxwiqxxxlxxxxvlxYFaxsPFyDxxsnNexlxmQxxxxxLxxmxGiEyxlxhxxxepxlxVIrKqxRxxxxyqxpxxyxVixsRllstxxxLxxalxx lxd >c3rj1G_ PEWIQVFGLRTENVLDYFAESPFFDKTSNNQVIKXQRQFSQLNDPNEEEFAYVDPARRQILFKYPXYXQLEEELXKLDIFKIVQSRLXSTSYHLNSTLES LYD >UniRef50_C4VA29(17-128:162) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA29_NOSCE E=0.0001 s/c=0.43 id=29% cov=93% --------LTSENILDYFSTSPFYDKSSINEILKMQNQYRGISTLQqdvskhkGVFYVLDHYNTDNTLFVIRqsdndvnlaYFYVIHGHIYKApTNNKIF NTRVNDIYWYLNEILDSYLD >UniRef50_Q54PN3(74-190:267) Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum RepID=MED6_DICDI E=2e-19 s/c=0.83 id=24% cov=99% PLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQRlDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINgniyqapelhvvfkS RVSQSISHLSEAFNSI-- >UniRef50_Q5A2Z1(12-144:263) Mediator of RNA polymerase II transcription subunit 6 n=6 Tax=Saccharomycetales RepID=MED6_CANAL E=1e-22 s/c=0.80 id=33% cov=100% PEFIQERGLNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQiqippgvsfhqyfqsrLSEMTGIEFVIA-YTKEPDFWIIRKQKRQDPQntvtlqdyyii ganvYQAPRIYDVLSSRLLASVLSIKNSTDLLND >UniRef50_Q5KPC2(20-153:357) Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Filobasidiella neoformans RepID=MED6_CRYNE E=3e-18 s/c=0.69 id=29% cov=100% PEAIAANPARslatPDLAMDYFAYSPFWDAKSNNNVLRTQRRIEnpayghaeekvELNaFMSGFEYVVAH-SQPPDLFVIHRREVessgkrdrvtgawfi lHEKIYQCPTLFDVMSTRLKNATSLISKTLSTLSE >UniRef50_A8QDE1(48-165:330) MED6 mediator sub complex component family protein n=1 Tax=Brugia malayi RepID=A8QDE1_BRUMA E=2e-17 s/c=0.76 id=29% cov=95% PNWPPNF-ITPDNVLDYFCDpgNVFYDVSSCNQHIRMQNlnrpLHECLQSMQGIQYTVV--GTFPPLYVIMKQRRNSPTnvtplayyyivngtvYQCPDI YTYIQSKLISIVDPLRQALEQ--- >UniRef50_D2UYG4(48-168:260) Putative uncharacterized protein AM43 n=1 Tax=Naegleria gruberi RepID=D2UYG4_NAEGR E=0.0002 s/c=0.39 id=19% cov=91% --------VNEDTALEYFCNrsNPFYSKKSVNETLRMQQtggiidRNALLESTEGIRYSVDSKrSKPPSLFiikkekvekkdrnapkllnLYYIAAEAGV VYQSPSVYDVIQARSFNSLSLLNQTFKEI-- >UniRef50_A2DFQ7(18-79:232) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2DFQ7_TRIVA E=0.0004 s/c=0.74 id=28% cov=49% -DFLQMNLLTIGNLFNsYFNNSPFYDPTCLNEQVNRYEKFTDIFDENGITY------------------------------------------------- ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2845 0 0 E 2 2940 * 3499 981 * * * * * 3950 * 3556 5376 3695 * 5414 * * * * 2 0 * * * * * * 3093 0 0 W 3 4248 * * * 2713 * 3920 * * * * * * * * * * * 456 * 3 57 * 4694 * * * * 3323 0 0 I 4 * * * * * * * 1296 * 1630 4127 * 3634 * * * * 2923 * * 4 36 5347 * 0 * * 0 3277 1000 1096 Q 5 3624 * * * * 4534 * * * * * 4881 2045 890 * 4059 * * * * 5 55 4746 * 0 * 0 * 3409 1165 1096 V 6 2466 * * 4567 5174 5135 * 4432 * * 1831 3579 * 6294 4704 2993 3140 5684 * * 6 138 * 3458 * * * * 3519 0 0 F 7 3049 * * * 2046 3423 3498 * * * 4060 2395 * * 4402 * 5306 * * 2914 7 188 4201 3887 0 * * 0 3361 1402 1699 G 8 * * * * 4475 1063 * * * 3160 * * 2212 * 4805 * 3758 4685 * * 8 141 3427 * 742 1315 0 * 3319 1674 2190 L 9 4719 * * * * * * 2889 * 419 * * * * * * 4562 4766 * * 9 0 * * * * * * 3503 0 0 R 10 * 4993 3379 6048 * * 2229 * * * * 1904 * * 2925 3526 2660 * * * 10 56 4719 * 2000 415 * * 3503 1000 0 T 11 4827 * 4905 3162 * * * 4260 4527 * * 5807 2199 * 3653 1994 2663 * * * 11 0 * * * * * * 3503 0 0 E 12 4993 * 1946 3573 * 3205 5520 * * * * 1767 * 3034 * 6332 3911 * * * 12 0 * * * * * * 3503 0 0 N 13 * * * * * * * * * 2916 * 1000 * 4977 * 3443 2208 * * 5196 13 0 * * * * * * 3503 0 0 V 14 2759 * * * * * * 2544 * 3956 * * * * * * * 698 * * 14 0 * * * * * * 3508 0 0 L 15 * * * * 2688 * * * * 483 2951 * * * * * * * * * 15 0 * * * * * * 3508 0 0 D 16 5527 * 1144 2524 3172 * 4065 5963 * * * 4376 * 3800 * * * * * 4463 16 71 4376 * 0 * * * 3508 1000 0 Y 17 * * * * * * * * * * * * * * * * * * * 0 17 0 * * * * * * 3508 0 0 F 18 * * * * 0 * * * * * * * * * * * * * * * 18 30 5596 * 1000 1000 * * 3508 1000 0 A 19 1074 2551 * * 4990 * * * 5596 * * 4376 * * * 1976 * * * * 19 50 4864 * 1000 1000 * * 3508 1076 0 E 20 5941 * 4131 1928 * 5916 * * * 2574 * 3157 * 2759 * 4184 3623 * * 3583 20 416 1997 * 1086 919 * * 3508 2711 0 S 21 * * * * * * * * * * * 1711 * * * 526 * * * * 21 0 * * * * * * 3508 0 0 P 22 3854 * * * * * * * * * 5164 * 265 5067 * * 6032 5279 * * 22 0 * * * * * * 3508 0 0 F 23 * * * * 0 * * * * * * * * * * * * * * * 23 0 * * * * * * 3508 0 0 F 24 * * * * 1967 * 4990 * * * * * * * * * * * 4735 567 24 0 * * * * * * 3508 0 0 D 25 * * 242 4025 * * * * * * * * * 4575 * 4288 * * * * 25 0 * * * * * * 3508 0 0 K 26 3828 * * * * * 3847 * 2068 5609 5200 * 3024 4840 1461 * 5208 5279 * * 26 0 * * * * * * 3508 0 0 T 27 * * 4575 * * * * * 3494 4754 5800 3498 * 3733 4940 2799 1183 4878 * * 27 0 * * * * * * 3508 0 0 S 28 * 1224 * * * * * * * * * * * * * 806 * * * * 28 0 * * * * * * 3508 0 0 N 29 * 4239 * * * * * 5060 5916 3650 * 351 * * * * * 4768 * * 29 0 * * * * * * 3508 0 0 N 30 * * * * * * * * 4979 * * 46 * * * * * * * * 30 46 * 4990 * * * * 3508 0 0 Q 31 3167 * * 828 * 4829 * * * * * 4600 * 2131 * 5589 * * * * 31 0 * * * * * 0 3476 0 1000 V 32 6147 * * * * * 4566 2762 * * 5236 * * 2642 3857 3982 3345 1400 * * 32 0 * * * * * 0 3451 0 1000 I 33 * * * * * * * 2119 * 1004 * * * * * * * 2087 * 4807 33 0 * * * * * 0 3451 0 1000 K 34 3982 * * * 4392 * * * 1615 * 4721 4199 * * 1399 * 4701 4807 * 5884 34 0 * * * * 0 * 3451 0 1000 X 35 * * * * * * 4814 3998 * 5909 672 5896 * 3771 3662 4725 4707 6320 * * 35 0 * * * * * * 3490 0 0 Q 36 4629 * * 5573 * * * * * * * * * 217 5167 * * * * 4313 36 72 4367 * 2747 233 * * 3583 1367 0 R 37 2757 * * 4313 3663 * * * * * * 2501 * 3551 1490 3842 4833 * * * 37 704 1372 * 1585 585 * * 3516 3206 0 Q 38 4969 * 2950 4336 * 3715 4954 5293 3613 5365 4879 3600 * 1762 3711 4640 5544 * * * 38 20 6193 * 0 * * * 3516 1000 0 F 39 4491 * * 5577 1830 * 3339 4775 * 3105 3878 4593 2841 * * * * 5202 * 2994 39 74 4331 * 4119 86 * * 3502 1627 0 S 40 4593 * 3925 2218 * * * * 6217 * * 2146 * 2892 4675 2394 3750 * * * 40 161 3243 * 3409 143 * * 3502 2073 0 Q 41 5049 4264 4287 2453 * 4675 2865 * 4394 4593 * * 4949 1459 5473 * * * * * 41 231 2755 * 4285 76 * * 3502 1938 0 L 42 * * * * * * * 3585 * 281 4753 * * 4813 * * * 5581 * * 42 32 5523 * 3000 193 * * 3587 1000 0 N 43 * * 5932 4563 4395 6396 4288 * 2401 4918 6254 3205 * 2873 3116 2247 5364 * * * 43 118 3673 * 3279 157 * * 3587 1804 0 D 44 * 4918 3904 3351 4257 * * 4826 2975 * * 2807 * 2896 3668 3879 2613 * * * 44 53 4789 * 0 * * * 3587 1000 0 P 45 * * * 4496 4325 * * * 5525 3194 780 * 3106 * * * 4546 4903 * * 45 36 5329 * 5585 30 * * 3733 1000 0 N 46 * * 4469 3714 * 4722 * 3968 4389 * * 3950 3382 2570 3991 3522 2316 4342 * * 46 91 4033 * 2103 382 * * 3733 1619 0 E 47 * * 5329 5618 * 156 * * * * * * * * 5674 4722 * * * * 47 0 * * * * * * 3733 0 0 E 48 * * * 5618 4890 * * 1429 * 1984 3659 * * 5329 * * 5226 2388 * * 48 0 * * * * * * 3733 0 0 E 49 * * * 454 5285 * * * * * * * 4722 3533 4546 6222 3968 * * * 49 0 * * * * * * 3733 0 0 F 50 * * * * 1333 * * * * 4722 * * * * * * * * * 823 50 55 * 4733 * * * * 3733 0 0 A 51 3903 6085 * 3584 * 3608 * 2165 4894 * 4992 * * 5691 4582 4238 4905 1655 * * 51 19 * 6239 * * 0 * 3702 0 1096 Y 52 * * * * * * * 3434 * 1123 * * * * * 4483 * 1714 * 3340 52 203 4056 3813 3585 126 0 * 3714 1519 1000 V 53 2636 * 3450 * * * * 2854 * 2192 * * * * * 4891 3595 2093 4661 * 53 200 * 2949 * * 456 1882 3951 0 1816 D 54 5721 * 3304 * * * 914 * 4060 * * * 4525 * * 2768 * * * 3337 54 629 * 1501 * * 585 1584 3793 0 2146 P 55 3982 * 3777 3306 3319 * 4043 * 3778 4528 3853 4131 3418 * * 5548 * 4410 * 2342 55 227 3778 3778 0 * 0 * 3502 1000 2827 A 56 2138 * * * * 4883 * 4952 * * * 3865 3438 * * 2308 3140 2118 * * 56 115 4233 5420 3700 115 0 * 3982 1132 1339 R 57 2944 * 4621 2927 * * 5827 * 3970 * * * * 1740 2239 * 3249 * * * 57 57 4680 * 1585 585 0 * 3930 1080 1000 R 58 * * 3349 1113 4978 * * * * * * * 1722 * 3256 * * * * * 58 0 * * * * * * 3931 0 0 Q 59 * * 4856 * * * * * * * 4686 4571 524 3898 * 3033 * * * * 59 26 5823 * 0 * * * 3844 1000 0 I 60 5819 * 2599 * 4308 * 5272 1937 * 3769 * 2914 4905 4486 * 3512 3856 4681 * * 60 57 4681 * 2000 415 * * 3986 1000 0 L 61 * 5352 * * 2163 * * 3206 * 725 * * * * * * * 4681 * * 61 0 * * * * * * 3986 0 0 F 62 * * * * 1370 * * 4773 * 5092 * * * * * * 4997 * 1599 2429 62 127 3570 * 3492 134 * * 3986 1685 0 K 63 * * * * * * * 1734 5247 3822 * * * * 3877 * * 904 * * 63 0 * * * * * * 3986 0 0 Y 64 5092 4773 * * 5057 * * 513 * * * * * * * * * 4020 * 2818 64 0 * * * * * * 3986 0 0 P 65 5423 * * * * * 3845 * 3202 * 4905 * 3405 3639 988 * * 4681 * 4399 65 66 4488 * 3170 170 * * 3986 1000 0 X 66 * * * * * * * 4358 458 * 4829 * * 3896 4828 * * 4630 * 4463 66 0 * * * * * * 3973 0 0 Y 67 4399 * * * 4488 * 3877 * * * * * * 612 2942 * 5092 * * 5247 67 0 * * * * * * 3986 0 0 X 68 3008 * * 3181 4982 * 3464 * 3702 5788 5707 3137 * 3404 2527 * 3694 * 5332 4463 68 0 * * * * * * 3973 0 0 Q 69 * * * 4399 * * * 5092 * * 3877 4773 * 5247 487 * * 3663 * * 69 306 2388 * 3176 169 * * 3986 2570 0 L 70 4392 * 3817 * * 4670 3247 2942 6048 1858 * 3827 * 4882 5808 3085 4684 5803 * 5727 70 113 3730 * 0 * * * 3987 1861 0 E 71 * * 4512 2137 * 2441 4475 * 5794 * * 3984 2971 5790 * 2084 * 4758 * * 71 107 3812 * 2440 294 * * 3986 2061 0 E 72 6502 * 3788 5229 * 3602 * * 3800 * * 3437 1675 4803 3758 4357 3013 4389 * * 72 95 3978 * 4011 92 * * 3986 1848 0 E 73 * * 4391 1681 * * 4475 3061 * * * 4254 * 3013 5790 * 2312 3645 * * 73 603 1549 * 3784 109 * * 3986 3085 0 L 74 4873 * * * * * * 4475 * 3115 * * * * * * 5895 1751 * 1024 74 0 * * * * * * 3986 0 0 X 75 5667 * 5864 5506 * 4799 * 5151 4131 5042 2988 * * 1187 5813 4735 3549 5774 * 3935 75 0 * * * * * * 3974 0 0 K 76 1439 3869 * * * * * 5077 2643 * * * 2030 * * 3460 * 4744 * * 76 82 4184 * 3807 107 * * 3986 1492 0 L 77 3959 * * * * * * 4873 * 2278 3330 5077 820 * * * * * * * 77 270 2551 * 3971 95 * * 3986 2722 0 D 78 4616 * 1579 5403 * * 5257 * 4965 5045 * 4085 * * 5355 2749 1916 6017 * * 78 47 4965 * 5524 32 * * 3986 1000 0 I 79 5778 * 5167 * 4664 * * 2613 * 1524 4758 4475 * * * * 3566 2201 * 5684 79 0 * * * * * * 3986 0 0 F 80 3278 * * * 3046 3032 4395 * * 5528 * 4049 * * * 5672 * * * 987 80 55 4744 * 3807 107 * * 3986 1094 0 K 81 4207 * 2628 * 4700 * * * 2443 * * 3661 * * * 2049 3493 5403 * 2960 81 0 * * * * * * 3986 0 0 I 82 * * * * * * * 1665 * 3160 5388 * * * * * * 957 * 4889 82 24 5896 * 3807 107 * * 3986 1000 0 V 83 * 5527 * * 3866 * * 1349 * 2107 3500 * * * * * * 2347 * * 83 29 5668 * 3807 107 * * 3986 1000 0 Q 84 4523 * 4260 * * 3322 * * 5393 * * 1568 * 1871 * 2779 5375 * * * 84 151 3335 * 3807 107 * * 3988 2037 0 S 85 3112 * * 5518 * * * * * * * 2623 * * * 794 3018 * * * 85 0 * * * * * * 3988 0 0 R 86 * * * * * * 5513 * 3431 * * 5518 * * 212 * * * * * 86 0 * * * * * * 3988 0 0 L 87 5834 * * * * * * 2547 * 889 5513 * * * * 4383 * 2312 * * 87 0 * * * * * * 3988 0 0 X 88 * * * 4652 4298 * * 4856 3556 827 4657 4443 * 5278 * 3525 * 5160 * * 88 0 * * * * * * 4005 0 0 S 89 4561 * 4471 * * 4768 * * 4388 * * 2632 * 4189 4109 1119 3418 * * * 89 0 * * * * * * 4018 0 0 T 90 2050 4388 * * * * * 3075 * * * * * * * 1961 1577 * * * 90 0 * * * * * * 4018 0 0 S 91 4671 * * * * * * 2990 * 3135 * 4221 * * * 2267 3450 1630 * 4471 91 0 * * * * * * 4018 0 0 Y 92 * * 4870 3716 * * 3527 * * 4058 4932 * * * * 2492 3745 3391 4471 1656 92 0 * * * * * * 4018 0 0 H 93 3351 5493 * * 4932 3777 1915 * * 3564 * 3559 3818 5684 3958 2839 * * * 4471 93 0 * * * * * * 4018 0 0 L 94 * * * * * * * 2727 * 320 * * * * * * * 4388 * * 94 0 * * * * * * 4018 0 0 N 95 * * * 5461 * * * * 3332 * * 2439 * 2634 2711 1850 3290 * * * 95 0 * * * * * * 4018 0 0 S 96 5915 * * 3323 * * 4221 * 2002 * 5299 3206 * 3579 4932 1797 4569 * * * 96 0 * * * * * * 4018 0 0 T 97 1045 * * * * * * 3565 * 3745 * * * * * 3015 2382 4617 * * 97 0 * * * * * * 4018 0 0 L 98 * * * * 1343 * * 4617 * 1038 4253 * * * * * 5276 * * * 98 0 * * * * * * 4018 0 0 E 99 4826 * 2462 2065 * * 4238 * 2385 * * 3278 * 4473 * 2720 * * * * 99 0 * * * * * * 3853 0 0 S 100 * * 5321 1964 * 4238 * 5529 * 5130 * * * 2823 * 2630 1786 5476 * * 100 0 * * * * * * 3853 0 0 L 101 * * * * * * * 2528 * 505 * * * * * * * 4373 * 3767 101 0 * * * * * * 3498 0 0 Y 102 * * * * * * 2422 * 3029 2496 * 3007 * * * 2635 * * * 2132 102 0 * * * * * * 2650 0 0 D 103 * * 505 2550 * * * * * * * * * 3003 * * * * * * 103 0 * * 0 * * * 2628 0 0 //