HHsearch 1.5 NAME c3r3tA_ FAM FILE c3r3tA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3r3tA_.a3m DATE Sat Apr 2 08:44:21 2011 LENG 95 match states, 95 columns in multiple alignment FILT 101 out of 292 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.2 EVD 0.4420 0.8320 SEQ >ss_dssp CCCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCSCCCCCCCCCCHHHHHHHHHHHHHCTTCCCCCCCCCC >sa_dssp EEEEEEEEDECEEECDEEDDEDDCEEDDDDDEEEEDEDEEEEEEEEEEEEEEEEEEDEDEEEEEEEEDEEEDDDDDCEEBEEDEEDEECEEEEEE >ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEEEECC >ss_conf 98611389998799998999999999999998649899996126873376154786603489999944824789999872589432799998629 >Consensus xxRxYExxxilxxxxxxxxxxxxxxxxxxxixxxggxixxxexxGxrxLaYxIkkxxxGxYxxxxfxxxpxxixelxxxlxxxxxVlRxlxvKxd >c3r3tA_ AXRKYEIXYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYXILNVNANAEAINEFDRLAKINEDILRHIVVKEE >UniRef50_A6CAM0(3-93:138) Probable ribosomal protein S6 n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAM0_9PLAN E=3e-11 s/c=0.77 id=21% cov=97% ---NYEGMFLLDSGKFAADHEGTIAHLMEILDKAGAEIVAHRPWQDGKLAYEIEGHMKGLHYLVYFTMPGSGMDVITRSCHLSDVVIRQMVIKQ- >UniRef50_A6DQL9(2-94:106) Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQL9_9BACT E=3e-07 s/c=0.61 id=20% cov=99% --KKYDAIFILNDRKYEDGGEAFSKKVEEQIVSLGGSDVTVKNMGRKQFARAIGKRTSGLYLRFFLNLPEDKVSEFIESYRLDNTVLRTVVYNYE >UniRef50_B9WGY6(2-100:119) Mitochondrial ribosomal protein, small subunit, putative n=7 Tax=Saccharomycetales RepID=B9WGY6_CANDC E=2e-09 s/c=0.64 id=19% cov=98% ---YYELFAIARitdPLNTAKEATKIASTVGKLILNNRGIIRDITSLGAKPLPQIISKeqerHFQGYHFIIGFDSSPNVQTQLLRTLRRDPRILRSSIMK HD >UniRef50_A4S862(42-135:136) Plastid ribosomal protein S6 small ribosomal subunit n=2 Tax=Ostreococcus RepID=A4S862_OSTLU E=5e-09 s/c=0.66 id=17% cov=95% ----YEGVMLLRPDCDDATRATTMDDFKAMFGEGLVAWEQTEH-GLKPNSYEIKGYPDAYQVVVNFTCAPAVFKAASEELARpavgsEEVVLRTMFMKT- >UniRef50_B6KU11(282-372:406) Ribosomal protein S6, putative n=3 Tax=Toxoplasma gondii RepID=B6KU11_TOXGO E=1e-15 s/c=0.92 id=18% cov=97% --RLYRVVALFRPELSVPKIKEAVRPYVDQLQQWRCRSLRVTYRGYRRLAYRVKKKDSAHVVEMTFDLLPSAVHYLHVKLNLDDNIIRFMILK-- >UniRef50_Q8IKJ9(4-99:120) Mitochondrial ribosomal protein S6-2, putative n=8 Tax=Plasmodium RepID=Q8IKJ9_PLAF7 E=3e-09 s/c=0.66 id=19% cov=95% ----YESYISLNKHIKKDDVRNLMKNFNYIINKHNGNIISINDLGWRKFAFCIKKpkvgtFHFGRFYCITFYSNSKSIKDLNEFFHSNTYVLRFLNMK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2471 0 0 X 2 * * * * * * * * * 1995 * * 1979 1974 * * 2053 * * * 2 0 * * * * * * 2485 0 0 R 3 * * * * * * * * 2368 * * * * * 311 * * * * * 3 0 * * * * * * 5802 0 0 K 4 * * 5138 3820 * * 3961 5105 2434 4255 * 2906 5186 3269 2425 5616 3944 * * 4889 4 0 * * * * * * 6639 0 0 Y 5 * * 5639 * * * * * * * * * * * * * * * * 29 5 0 * * * * * * 7300 0 0 E 6 * * 3342 294 * * * * 5865 * * 5253 * * 5089 6253 * * * * 6 0 * * * * * * 7300 0 0 I 7 3270 4032 * * 5604 4109 5151 3142 * 1850 4395 6374 * * * 4808 2537 3833 * * 7 0 * * * * * * 7300 0 0 X 8 5494 5656 6077 * 5083 * * 3495 * 3034 1894 4829 5470 * * 4675 4153 2070 * 4552 8 0 * * * * * * 7310 0 0 Y 9 4824 5709 * * 2185 5168 * 3466 * 2032 4923 * * * * * 4485 2847 * 2774 9 0 * * * * * * 7300 0 0 I 10 * * * * * * * 1100 * 1541 5034 * * * * 4774 * 3025 * * 10 0 * * * * * * 7307 0 0 I 11 3561 * * * 3146 * * 2889 * 1264 4470 * * * * 5759 4979 2920 * 5402 11 32 * 5519 * * * * 7314 0 0 R 12 6494 * 2458 * * 5395 3878 * 2504 * * 3888 * 5112 1860 2908 4892 * * * 12 86 6605 4386 1585 585 * 0 7304 1000 1704 P 13 3295 5168 6220 5069 * 4263 * 6197 4586 * 6696 5251 1217 4194 * 2992 4454 5174 * * 13 96 * 3953 * * 552 1653 7153 0 3479 G 14 5084 * 2773 2813 5666 3620 4673 5908 3797 4703 5363 3363 6086 4142 4974 4165 3341 4813 * * 14 17 * 6402 * * 228 2772 7201 0 3696 V 15 3185 6286 * * 4421 4756 5656 3298 4369 1762 4058 6602 5326 5846 5586 * 4650 2832 * 6048 15 44 5749 6427 2807 222 0 * 7298 1000 1659 E 16 3672 * 3739 3197 6282 5611 5652 * 4501 5615 * 3532 3280 5778 4667 2124 3354 6916 * 4744 16 39 * 5233 * * 0 * 7304 0 1000 E 17 4142 * 2422 1845 * 6327 5990 6064 3299 4987 6176 4701 4172 5028 3948 5174 4119 6179 * * 17 0 * * * * 635 1489 7308 0 1960 E 18 3344 * 2790 1585 * 6488 6067 6575 5575 * * 4344 3635 5149 4939 3500 3703 * * 6585 18 40 * 5194 * * * 0 7335 0 1000 A 19 3680 * 3314 1845 * 3574 5676 4972 4032 5475 * 6767 * 2383 5347 5063 4811 4918 * * 19 0 * * * * 0 * 7333 0 2431 Q 20 3082 6864 * 6456 5689 6324 5501 2527 5768 2575 5831 6615 5398 6119 3243 6740 6083 2391 6799 4236 20 0 * * * * * * 7347 0 0 K 21 3180 * 3664 2590 * 5398 * 4070 2337 4131 * 4527 6736 3839 4865 4665 3987 4413 * * 21 0 * * * * * * 7347 0 0 A 22 2411 5457 3295 2805 * 3791 * 4916 3076 6708 * 3402 6402 3634 5503 4312 4283 * * * 22 15 * 6597 * * * * 7347 0 0 L 23 3162 * * 4409 5013 4670 7110 3312 4918 1854 4313 * * 5769 6489 4962 3649 2729 6518 * 23 34 * 5405 * * * 0 7348 0 1000 V 24 3819 * * 6418 5598 6407 * 2278 4502 2579 3750 4609 * * 5555 4455 4457 2061 * * 24 0 * * * * 583 1589 7316 0 2339 E 25 3484 * 2870 2368 6524 4971 * 6464 2427 6601 * 4469 * 4110 3762 3523 4428 7201 * 6292 25 13 * 6789 * * * 0 7347 0 1000 R 26 5489 * 4528 3218 5750 4045 4833 6816 2703 5004 6740 3735 5231 3731 2188 5078 4013 * 6688 6383 26 0 * * * * 1053 949 7340 0 1749 F 27 4340 5742 * * 3473 * 6333 2358 * 2185 6080 5736 * 6495 * * 4313 2499 * 2810 27 0 * * * * 0 * 7352 0 1000 A 28 3001 6259 * 2892 6499 2985 5591 * 2503 4939 5276 4112 6431 3436 4393 5076 4092 4766 * * 28 0 * * * * * * 7359 0 0 G 29 2639 * 3466 2997 * 4586 6969 * 2420 * * 5319 6468 4173 4432 2929 3447 * * 5261 29 0 * * * * * * 7364 0 0 V 30 4454 * * 4343 4155 6366 4270 2358 5593 2821 4109 5101 6506 4577 5178 4635 3529 3404 * 4692 30 16 * 6468 * * * * 7364 0 0 L 31 5503 * * * 3506 * * 1589 * 1445 6362 * * * * * * 2489 * * 31 27 * 5734 * * 0 * 7352 0 1000 T 32 3585 * 6345 2616 4608 4964 6827 5247 3264 3169 4826 4622 * 3940 4647 5747 2749 4656 * 5064 32 0 * * * * * 0 7356 0 1741 N 33 4766 * 2898 2754 * 5443 * 6261 2289 5367 * 3513 5474 3477 4113 2811 5983 * * * 33 0 * * * * 984 1016 7356 0 1741 N 34 4034 * 4736 4146 5485 4474 5098 6412 4056 3629 6695 2261 * 3896 3540 3717 5646 4594 6237 3763 34 55 5903 5581 0 * 0 * 7354 1301 1000 G 35 5690 * 4956 4368 * 810 5463 * 3725 5061 * 3509 * 6683 3815 4932 * * * * 35 41 6730 5762 1585 585 1000 1000 7348 1000 1741 A 36 1936 4554 * * * 843 * 6495 6512 * * * * * * 4892 6234 3841 * * 36 17 * 6437 * * 1643 557 7355 0 2082 E 37 5005 6934 6944 2312 4912 * 5529 4114 3388 6761 6561 4858 * 3844 4699 3601 2789 2822 * 6379 37 38 6262 6240 2000 415 583 1590 7342 1000 2162 I 38 * * 4966 4113 5442 * * 1518 * 3515 7091 4193 5825 * * 6238 * 1581 6297 6570 38 0 * * * * 953 1048 7343 0 1640 I 39 5776 6510 4771 4349 3768 * 5337 2765 3817 3090 6468 6822 * * 2680 6027 2997 3081 5925 * 39 36 7242 5793 1585 585 0 * 7352 1000 1000 N 40 3959 * 4214 3669 5700 4848 4349 5787 2317 4941 6872 3330 * 4543 3190 3026 4979 4884 * * 40 12 6956 * 0 * 0 * 7347 1000 1774 T 41 4928 * 5894 3996 4251 * 5651 2771 6123 2450 5130 6299 * 6547 * 4106 3496 2089 * 4727 41 0 * * * * * * 7364 0 0 K 42 5228 * 2769 1429 6591 * * 6536 3963 5754 * 4230 6745 3123 4136 5842 3739 6213 * 6477 42 0 * * * * * * 7364 0 0 E 43 * 6070 2886 4156 6620 * 3704 7173 3690 6439 5722 2209 3867 6943 4985 3095 5525 4300 * 3682 43 18 * 6338 * * * * 7364 0 0 W 44 * * * 6234 3663 * * 4464 5245 2136 3576 * * 6406 3427 5700 * 5744 1533 4774 44 19 * 6294 * * 0 * 7342 0 1000 G 45 * * 5445 5619 * 164 * 6378 * * * 5341 * 6340 6065 * * * * * 45 28 5701 * 0 * * 0 7362 1000 1000 K 46 5772 5701 4247 3783 6065 * * 4002 2725 2556 4997 4919 * 4958 2693 5008 4372 3909 5181 6187 46 14 6733 * 0 * * 0 7362 1000 1000 R 47 * * * * 5710 6340 6710 5701 2287 4674 * 6835 * 3839 893 6561 4903 4858 * * 47 13 6835 * 0 * * 0 7362 1000 1000 R 48 4618 * 3368 3685 * 6468 5152 * 2424 6733 * 3440 3931 4147 2227 4138 4266 * * 6257 48 0 * * * * 0 * 7362 0 1000 L 49 * * * * 2805 * * 6961 * 378 6400 5226 * * * * 4607 * * * 49 0 * * * * * * 7364 0 0 A 50 828 * 5794 4910 * 5301 * * * 5708 * 6633 2596 * * 3745 5874 3975 6610 * 50 60 4619 * 1142 871 * * 7364 2282 0 Y 51 * 6484 * * 4034 * 4552 * 5794 * * * * 4528 4101 * 4489 * * 472 51 15 6615 * 2000 415 * * 7364 1000 0 E 52 4638 4978 7130 2617 6093 4835 5554 5350 3430 6991 * 6633 1414 * 3121 4695 6590 6331 * * 52 0 * * * * * * 7364 0 0 I 53 5454 * 5905 * 5195 6394 * 549 * 4320 3946 * 6841 * * 5708 5621 3747 * * 53 50 4875 * 2285 331 * * 7364 2212 0 N 54 4961 * 4725 3614 * 3763 6967 * 1497 * * 3739 * 3343 2529 5163 5554 5905 * * 54 57 4682 * 2000 415 * * 7364 2457 0 D 55 4820 * 5614 5707 * 3096 4252 * 762 7139 * 5541 * * 3724 5078 6993 6482 * 6266 55 140 3435 * 2262 337 * * 7364 3864 0 L 56 5930 5800 5550 4281 3742 * 2101 6331 3714 4631 5276 3877 6278 3228 4278 4674 * 4277 * 3317 56 0 * * * * * * 7364 0 0 R 57 5350 * 4809 3968 3481 5794 5553 * 3021 5660 4948 3960 5392 4712 2634 4016 2788 5753 6579 4359 57 50 4864 * 1880 457 * * 7364 2212 0 E 58 5905 * 3000 2273 6311 * 5067 5704 2370 * * 5037 * 3202 3278 3361 5514 * 7066 5183 58 78 4243 * 2000 415 * * 7364 2670 0 G 59 1843 * * * * 526 * * * * * * * * * 6122 * 6299 * * 59 11 7066 * 2000 415 * * 7364 1000 0 F 60 7130 * 4380 6755 3882 * 2366 3765 4839 4797 6993 4285 * 4156 3615 4649 4194 4513 * 2365 60 0 * * * * * * 7364 0 0 Y 61 * 5487 * * 3429 * 4260 6615 * 5804 5772 * * 5226 * * * 6259 4574 505 61 11 7066 * 2000 415 * * 7364 1000 0 X 62 5032 5738 * 6614 2516 * 4959 3259 * 3381 4673 * * * 6539 6715 5399 1729 4271 3376 62 0 * * * * * * 7374 0 0 I 63 * 6311 * 5279 5391 5794 4700 3512 6882 1851 3573 4037 * 3016 5075 * 4887 3481 * 3532 63 0 * * * * * * 7364 0 0 L 64 6394 5031 * * 2585 * * 2614 * 2888 2049 * * 7066 * 5900 5234 3133 6524 3733 64 0 * * * * * * 7364 0 0 N 65 5012 6772 3389 3878 5444 5503 4342 4978 3490 5590 * 2780 6975 4931 3865 3436 3218 6547 * 3396 65 0 * * * * * * 7364 0 0 V 66 5748 6610 * * 941 * 7148 2935 * 3354 4759 * * * * * 6122 4394 * 3108 66 13 6816 * 0 * * * 7364 1000 0 N 67 4219 6477 2834 2736 6591 6093 5192 6448 5237 4198 5181 3418 * 4428 3491 3524 3249 5160 * 5426 67 11 6978 * 0 * * * 7364 1000 0 A 68 1682 3154 * 6816 6482 2443 * 4652 6978 3531 4461 * * * * 3185 4037 5535 * * 68 0 * * * * * * 7364 0 0 N 69 3831 * 3416 2961 * 5509 6093 6536 4641 5499 * 2987 2514 5684 6579 2588 4032 6961 * 4994 69 8 7591 * 0 * * * 7364 1000 0 A 70 3480 * * 6346 * 2543 6366 5553 6717 6550 * 4713 1112 6480 5333 4093 4444 4984 * * 70 0 * * * * * * 7364 0 0 E 71 2789 * 4253 3242 5794 3773 6809 5491 3279 6855 * 3217 6743 4116 5427 2663 3536 * * 5542 71 0 * * * * * * 7364 0 0 A 72 2182 6746 5915 6745 5739 5219 6398 4018 3545 3107 6758 5669 6400 5483 6394 2848 3644 3286 * 5202 72 0 * * * * * * 7364 0 0 I 73 4865 * * 5908 5696 * 6819 1850 6482 2354 4427 5158 4865 4308 6480 6745 6524 2112 6093 * 73 0 * * * * * * 7364 0 0 N 74 2663 * 3550 3744 * 5497 4977 5666 2604 6213 * 2906 4660 4227 3940 4639 3842 6484 * 5794 74 0 * * * * * * 7364 0 0 E 75 3402 * 3299 1310 6550 5014 * 6633 3788 6477 * 5637 4686 4227 5264 3997 5787 4917 * 6259 75 0 * * * * * * 7364 0 0 F 76 4885 * * * 2720 * * 2474 * 1259 3579 * * * * * * 3423 6787 5028 76 40 * 5181 * * * * 7364 0 0 D 77 6371 * 3842 1658 5779 5464 4142 5516 3072 4238 6052 4861 * 4011 3978 4296 4193 5086 * * 77 0 * * * * 0 * 7328 0 1502 R 78 4609 * 4961 3097 * 6896 4415 * 2771 5770 6591 4660 * 5200 1630 3337 4461 5365 * 5563 78 0 * * * * * * 7364 0 0 L 79 3650 * 4176 3018 4604 6615 * 5552 2774 3863 5561 4853 * 3817 3262 4542 3392 5329 * 4060 79 0 * * * * * * 7364 0 0 A 80 3897 4372 * 5739 2586 6093 * 4343 * 1104 3505 * * * * * 6816 4600 * 4969 80 0 * * * * * * 7364 0 0 K 81 5475 * 4690 * * 4929 4017 * 2140 4649 * 2992 * 5396 1508 4207 5488 * * * 81 21 6115 * 2322 322 * * 7364 1000 0 I 82 5310 * * * 4166 * 5288 2362 4139 1577 6453 4487 * 4528 3725 4557 6862 4503 * 4764 82 33 5463 * 2322 322 * * 7288 1704 0 N 83 6762 * 1546 3167 * * 6972 4913 6798 * 6977 1753 * 5558 4287 4168 4209 * * * 83 0 * * * * * * 7288 0 0 E 84 * * 2081 1503 7067 6402 6617 6592 3904 5881 * 5100 3492 4557 5488 4896 4336 5554 * * 84 0 * * * * * * 7288 0 0 D 85 4349 * 2516 4493 6815 4380 5449 * 5130 4822 * 2822 6021 3738 2808 3051 4593 4690 * 6323 85 0 * * * * * * 7288 0 0 I 86 * * * * 4636 * * 1655 * 3335 6416 * * * * * * 912 * * 86 0 * * * * * * 7288 0 0 L 87 * * * * 5122 * * 1631 * 1036 4639 * * * 5528 5135 * 4666 5615 6538 87 13 6814 * 0 * * * 7288 1000 0 R 88 * * * * * * 5879 * 3235 * * * * * 242 * 5014 * * * 88 56 4710 * 362 2171 * * 7288 2218 0 H 89 * * 6936 6431 2003 * 2760 5467 5818 * * * * 4718 6498 3260 3947 4875 3427 2340 89 0 * * * * * * 7229 0 0 I 90 4554 * * * 4584 * * 3609 5457 1515 1900 4972 * 4763 5094 5551 5014 4965 * 6498 90 0 * * * * * * 7229 0 0 V 91 5199 4788 * * 3490 * 5765 2042 * 3560 7192 4906 6498 * * 4069 2237 2608 * 6102 91 0 * * * * * * 7229 0 0 V 92 * * * * 3709 * * 2644 * 2449 3715 5482 * 4234 * * 3902 1562 * 5427 92 0 * * * * * * 7211 0 0 K 93 7092 * * * * * * * 736 5214 * 3440 * 6393 2008 6280 * * * * 93 0 * * * * * * 7198 0 0 E 94 * * 3744 4146 * 6293 3889 * 3507 2680 5487 4504 6322 3897 3019 * 3897 2468 * 5190 94 0 * * * * * * 6924 0 0 E 95 * * 899 1865 * * * * 2402 * * * * * * * * * * * 95 0 * * 0 * * * 6297 0 0 //