HHsearch 1.5 NAME c3k1iA_ FAM FILE c3k1iA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3k1iA_.a3m DATE Sat Aug 28 21:18:26 2010 LENG 106 match states, 106 columns in multiple alignment FILT 103 out of 227 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4103 -1.2169 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCTTTTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH HHTCCC >sa_dssp EEBDDBCEBBCBACECADDACEBBDEEDDEDBDEBAEDACDBADDACEDCDEEEDCEEBEECCDCADDBCEBADDACEDDCCDCACEABDCADDCBEDCD EECEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH HHHHCC >ss_conf 9499999999999999999999999289999999999999999999972262001439999999999999999998841599999999999999999999 954388 >Consensus SPxxLixmLydgaixxlxxAxxaixxxdxxxxxxxlxkaxxIixeLxxxLdxexggeiAxnLxxLYxyxxxxLxxAxxxxdxxxlxevxxxlxxlreaWx eixxxx >c3k1iA_ SPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEAWR EIHSDE >UniRef50_A1T0K3(23-126:126) Flagellar protein FliS n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0K3_PSYIN E=2e-12 s/c=0.71 id=21% cov=99% SSIELIRMLHVKLMEEIDKMTFHLQEKNYAMKAASAQKSMDILIALDSSLDLSTGDELINNLHRIYEFAISKIYQASRNNDIEEINKLKPIIQDIKDGWD GLSA-- >UniRef50_C1ZHU5(37-136:187) Flagellin-specific chaperone FliS n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHU5_PLALI E=5e-15 s/c=0.82 id=21% cov=95% SPYQLHKMVVDAAVRNARFAVEQWNTADFDDVLEALAKARACVAELMNGVREEAAPDLASRQQALFAFCYKQLVMADVERSPDHAANGLRILMIHQETWQ ------ >UniRef50_B7AV81(20-119:160) Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AV81_9BACE E=1e-11 s/c=0.71 id=20% cov=95% ---ELVVILYEMAQQYIDDAQDMYSQGSCEEFRRYVKLAKRVTDELKVSLEMK--YPISAQLFNIYSYASSTLQTAMNRYDNANLDVVKRIYGRLAQAFS DIADQ- >UniRef50_O33422(19-123:132) A-type flagellar protein fliS n=5 Tax=Pseudomonas aeruginosa group RepID=FLISA_PSEAE E=7e-22 s/c=0.99 id=24% cov=100% -PYQVVKLLLDGALERIALARRAVLERNPALRGEAVGTTLSIIGALQAGLDHQQGGEIAGNLDALYDYMTRRLAGVALDDTPRPLDEVEALLGQIKQAWD AIGSAE >UniRef50_Q0F275(17-121:135) Flagellar protein FliS n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F275_9PROT E=6e-21 s/c=0.96 id=22% cov=100% -PLGLVLLTYEALFKSLGRTRMAILAADMSAEATHTSRAVEALIELNSSLNMEAGGDIAQSLASLYIYMMNRLSNGLCSASTEHVDEVIRLVQELREGWM QLSAQQ >UniRef50_A0AGG3(17-121:128) Complete genome n=87 Tax=Bacillales RepID=A0AGG3_LISW6 E=1e-10 s/c=0.65 id=21% cov=96% -PIKNTIYIYERCIIEFKKLDKALAKLHFSEADLILDKMEKIFEELKLQLNPEAGQELYDNIFGLYEWISEQIRQMQLLKQPVNIDTIIHVITQLKEGYE GV---- >UniRef50_C7M1N6(18-121:125) Flagellar protein FliS n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M1N6_ACIFD E=1e-06 s/c=0.52 id=22% cov=94% TPAQRLLILLDRLEANLVALGDAFRVRDLEAIHVNAKAAQAALALLRGALREDV-WEHAATIATLYTWALERLVRANVDKDPAPYEEARSVLEPLIAAWR ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 425 1971 * * * 1 0 * * * * * * 5890 0 0 P 2 * * * * * * * * 4849 * * * 201 4813 5523 5206 * 6509 * * 2 0 * * * * * * 6464 0 0 A 3 2913 * * 2422 6795 4018 2275 4396 6810 3323 * 5632 * 3557 * 5979 * 4131 * 3859 3 0 * * * * * * 6488 0 0 K 4 5690 * 4022 1964 * 4868 6572 * 2216 * * * * 1853 3252 6345 6827 * * * 4 0 * * * * * * 6684 0 0 L 5 5223 * * * * * * 3107 * 458 5900 5703 * 5363 6288 * 6229 4549 * * 5 0 * * * * * * 6746 0 0 I 6 * * * * * * 4988 1602 * 2236 6050 * * 5787 5983 * 2866 2122 * 6524 6 0 * * * * * * 6746 0 0 E 7 3697 6660 * 4241 6513 6304 6314 3223 4246 1848 5108 6787 * 4073 5551 6351 4035 2364 * * 7 0 * * * * * * 6746 0 0 M 8 4609 * 5409 * * * * 2996 4858 2066 1202 * * 5897 6388 * 6723 4483 * 5703 8 0 * * * * * * 6746 0 0 L 9 6677 7016 * * 6544 6524 * 4256 * 492 3574 6643 * * * * 4006 4594 * * 9 0 * * * * * * 6746 0 0 Y 10 * * * * 2765 * 6334 4541 * 2801 4973 * * * * * * 4612 * 782 10 0 * * * * * * 6746 0 0 E 11 7162 * 1127 1819 * 5787 6474 * 5497 * 6878 4467 * 3414 5804 6787 6219 6334 * * 11 8 * 7566 * * * * 6746 0 0 G 12 3612 * * 3037 * 1095 * 4267 3881 4857 5400 4597 * 6656 3335 * * * * * 12 0 * * * * * 0 6751 0 1000 I 13 1081 4608 * * 5163 5475 * 4030 * 1860 5668 * * * * 7318 6710 4327 * 6164 13 0 * * * * * 0 6751 0 1000 L 14 6760 6626 6374 4241 4909 7045 5908 1409 * 1674 5314 * * 4965 7031 * 6746 3407 * * 14 0 * * * * * 0 6751 0 1000 R 15 4506 * 3639 2875 6722 4696 * 4450 2668 5090 6069 5929 * 3657 2115 5479 4448 4742 * 6402 15 0 * * * * * 0 6757 0 1000 F 16 3411 * 4043 4007 2358 * 4649 * 5488 7026 * 3464 * 4587 2791 2968 5336 7036 * 3620 16 0 * * * * * 0 6757 0 1000 S 17 4727 4505 * * 4972 5001 * 2698 * 1171 3800 * * * * 5434 5788 3029 * 5553 17 0 * * * * * 0 6757 0 1000 S 18 3610 * 3390 2869 * 4175 3961 * 2733 7024 7339 3320 * 4354 3096 4206 4300 5008 * * 18 15 6597 * 0 * 0 * 6757 1000 1000 Q 19 4660 5226 4340 4367 4598 7027 6358 3914 3065 2942 5301 6418 * 2704 2575 5052 * 4212 * 5924 19 8 * 7574 * * * * 6753 0 0 A 20 591 5996 * * * 4176 * * * 4191 5325 * * * * 3800 3866 5541 * 5398 20 16 * 6467 * * * 0 6754 0 1000 K 21 4252 6381 5715 3061 * 4770 5970 3081 1754 4963 7030 6781 * 4433 3561 6866 4820 3244 * * 21 0 * * * * * 0 6734 0 1518 R 22 3214 6766 3954 2398 5105 3420 5792 3606 4061 3709 5260 6171 * 4416 4954 4107 5036 4429 * 5997 22 0 * * * * * 0 6734 0 1518 C 23 838 4335 7248 6919 5337 4088 4797 6514 6686 4702 5312 6080 * 5771 6027 3770 7036 * 5904 5235 23 0 * * * * * 0 6734 0 1518 I 24 4383 7344 6381 5248 5384 6605 5542 1468 5146 2152 3583 * * 6289 5362 * 6772 4128 5771 4959 24 0 * * * * 0 * 6734 0 1518 E 25 3445 * 4300 2023 * * 5660 5662 5801 3841 5475 3948 6898 2516 3176 4683 4604 5450 * * 25 26 6884 6777 2322 322 * * 6753 1000 0 N 26 2934 * 3555 2457 * 5691 6760 6494 3456 6887 * 3194 7002 3172 3152 4600 4069 5549 * * 26 16 6515 * 1585 585 * 0 6744 1000 1000 E 27 5182 * 5792 3685 * 1641 6773 * 2050 5718 6077 3103 * 5353 3724 4542 * 6349 * * 27 28 5695 * 1824 479 0 * 6744 1576 1000 D 28 6234 * 1243 3977 * * 4501 * 4376 6806 6309 2569 * 3624 3982 4926 4957 6811 * * 28 16 6526 * 1000 1000 * * 6753 1000 0 I 29 7081 6186 5807 * 3148 * * 1850 5651 3332 4805 * 4883 6836 4008 5251 4484 4299 5544 2574 29 0 * * * * * * 6753 0 0 E 30 2675 * 3807 1541 6537 5160 * 5195 4887 5413 * 6762 3332 5233 5354 3686 5673 4374 * * 30 38 5581 7578 1585 585 * * 6753 1625 0 K 31 2831 * 3336 2337 * 3695 6776 5707 2536 4017 5113 5039 * 4920 3945 6493 4738 5885 * * 31 15 * 6597 * * * 0 6757 0 1000 K 32 2063 7030 * 5469 3699 * 6960 5503 1698 6160 6961 6375 * 6405 2958 5455 5023 3701 * 6611 32 8 * 7488 * * * 0 6746 0 1460 I 33 3239 6616 5140 5171 6233 2465 3214 4524 5164 5766 6543 2641 * 6335 3855 4052 4706 4578 5791 5332 33 0 * * * * 1132 879 6748 0 1735 Y 34 3908 * 4809 2054 5226 * 4696 4547 3202 5182 6973 4144 6778 3448 3450 6353 4472 3983 * 4824 34 41 5169 * 1179 841 * 0 6759 1750 1303 Y 35 2188 * 6782 3605 7165 5091 3310 4808 4667 5021 4502 2974 5776 4595 3964 4114 * 7204 * 3530 35 0 * * * * * 0 6759 0 1303 I 36 4492 * * * 7132 * * 1719 6353 1294 5145 5909 * 5286 6622 5122 6757 3239 * * 36 0 * * * * * 0 6759 0 1303 N 37 4021 6767 4380 * 6435 2901 5823 3291 3557 4254 6380 3339 * 3691 3895 2874 4521 4537 * * 37 0 * * * * 1000 1000 6759 0 1303 R 38 5519 * 6175 6764 7032 * 3688 * 1114 5061 * * * 4979 1639 5909 6853 * * * 38 17 * 6385 * * * 0 6754 0 1000 V 39 757 3753 * * 6347 6590 * 5047 * 5987 4943 * * * * 3658 3995 3457 * * 39 0 * * * * * 0 6735 0 1481 T 40 * * * 4621 5436 5745 * 2924 6139 3399 4469 5619 * 2058 2915 4171 3038 4612 * 5608 40 0 * * * * * 0 6735 0 1481 D 41 2123 * 2208 3150 * 4175 * 5850 5147 4599 6304 3412 * 4713 3696 4554 4848 * * * 41 0 * * * * 0 * 6735 0 1481 I 42 3678 5785 * * 5738 6806 * 525 * 3493 * * * * * 6652 * 3607 * * 42 0 * * * * * * 6753 0 0 F 43 * * * 5912 3916 * * 1557 * 1691 * * * * * * 5343 2042 * * 43 19 6228 * 0 * * * 6753 1455 0 T 44 3166 * 3575 3452 7027 3610 5797 3940 6699 4806 5180 4240 * 4824 4306 3123 3047 4733 * 4170 44 0 * * * * * * 6753 0 0 E 45 3499 * * 988 * 2720 4686 5650 5598 5623 * 5587 * 4929 6762 5096 6556 6806 * 4496 45 11 7008 * 0 * * * 6753 1000 0 L 46 * * * * 5290 6228 * 5807 * 98 6781 * * * * * * * * * 46 0 * * * * * * 6753 0 0 L 47 4610 * 4360 4698 * 5645 4765 3461 3463 3033 3037 3806 * 2824 3050 4713 5795 * * * 47 13 * 6762 * * * * 6753 0 0 N 48 2860 * 3359 5289 5922 3297 6068 4719 6227 4657 7017 3454 5906 5555 4856 2512 3952 3269 * * 48 0 * * * * * 0 6746 0 1000 I 49 2676 4463 * * * 2730 6068 5727 * * 6806 4707 * 5713 5331 1800 2287 6524 7074 6353 49 13 * 6777 * * 0 * 6746 0 1000 L 50 * * * * * 6215 * 4057 * 199 * * * * * * * 4173 * * 50 72 6516 4738 0 * * 0 6753 1000 1000 D 51 * * 1102 5238 * * * * 5180 6165 * 1587 6266 * 3713 5449 5572 * * * 51 29 6865 6499 1000 1000 0 * 6682 1000 2678 Y 52 4929 * * 4476 2373 4761 3735 * 4807 3549 2625 6790 3939 5697 5160 4148 4604 4228 * 4018 52 13 6774 * 1000 1000 0 * 6730 1000 1000 E 53 * * 2400 1425 * * * * 3089 * * 4090 4798 3325 4923 3753 5734 * * * 53 212 6256 3015 1000 1000 * * 6753 1000 0 K 54 2308 * 4789 3967 6850 4300 6385 4133 2470 * * 4129 * 3403 3274 * 6171 3058 * * 54 101 * 3885 * * * 0 6607 0 4287 G 55 3562 * 5455 4689 * 553 6173 * 6216 * * 3957 * 5098 * 5372 * 6160 * 6246 55 91 * 4028 * * 238 2715 6546 0 4770 G 56 4375 * 6246 6693 * 1019 * 6455 6909 6287 * 6875 3427 4451 * 4079 6115 * 4462 2869 56 48 6429 5560 2585 263 0 * 6717 1000 3449 E 57 4760 * 2654 1010 * * * 5551 4788 * * 6419 3004 4797 * 4387 5622 6684 * * 57 0 * * * * 0 * 6740 0 1562 V 58 5573 * * 6306 6501 5099 6298 1426 * 2095 4813 * * * * 6455 * 2116 5557 6913 58 0 * * * * * * 6753 0 0 A 59 703 7163 * * * 4758 * 5329 * * * 6836 5704 * * 2464 5000 4123 * 5720 59 0 * * * * * * 6753 0 0 V 60 3058 * 3067 2293 6814 4120 * * 3217 5615 6983 4709 6391 4026 3825 3741 6444 3999 * 5416 60 0 * * * * * * 6753 0 0 Y 61 6501 * 3585 4863 5312 5822 6866 * * * * 1278 * 2228 3415 4145 4850 * * 6762 61 0 * * * * * * 6753 0 0 L 62 * * * * 6519 * * 4336 * 274 4043 * * 5785 * * * 4900 * * 62 0 * * * * * * 6753 0 0 T 63 3035 * 2561 4285 2910 7094 4513 5841 4181 3195 6054 4790 * 5208 4363 3369 6762 * * 4097 63 0 * * * * * * 6753 0 0 G 64 2303 * 4976 3805 5912 2998 * * 4577 6733 5890 3901 6182 4757 2587 2603 5413 6391 * * 64 0 * * * * * * 6753 0 0 L 65 * * * * 4313 * * 2194 * 704 5004 * * * * 6285 4815 4733 * * 65 0 * * * * * * 6753 0 0 Y 66 * * * * 4992 * * * * * * * * * * * * * * 46 66 0 * * * * * * 6753 0 0 T 67 3501 * 2376 2850 * 5573 * 3992 5589 3591 5131 3702 * 5647 3715 3637 3812 5051 * 6727 67 0 * * * * * * 6753 0 0 H 68 4688 * * 6309 1838 * 5057 * * 6693 * * * * 6256 5045 6733 4642 4980 987 68 0 * * * * * * 6753 0 0 Q 69 3648 2783 * * 4695 * * 2202 * 2762 2311 6418 * 6762 * 5186 5064 3795 6845 6501 69 0 * * * * * * 6753 0 0 I 70 4092 7163 6234 5804 5095 5480 7029 2853 4549 2701 4825 3885 * 4133 3697 3263 4499 4873 * 3484 70 0 * * * * * * 6753 0 0 K 71 4100 * 3585 3405 6803 6733 4715 6526 2765 6519 5185 4632 * 4693 2074 3563 4754 4605 6845 5431 71 0 * * * * * * 6753 0 0 V 72 4125 6699 6803 2112 * 6695 * 5928 3891 3693 * 5260 * 2951 2044 4725 3880 5765 * * 72 13 6803 * 1000 1000 * * 6753 1000 0 L 73 * 4988 * * 5233 * * 3082 * 490 5507 * * * * 5927 5869 4394 * 6866 73 0 * * * * * * 6753 0 0 T 74 3603 * 6442 6441 6879 6284 5236 3224 * 2478 4704 4079 5307 4662 4373 3948 3605 2539 * 5022 74 0 * * * * * * 6749 0 0 Q 75 3715 6616 3564 2177 5811 5931 5169 4900 3295 6298 4809 4981 * 2395 3738 6389 4588 6389 * * 75 0 * * * * * * 6749 0 0 A 76 584 * * * * 3322 * 5801 * 6928 5710 * * * * 4338 4623 3355 * * 76 33 6233 6797 0 * * * 6749 1000 0 N 77 5532 * 3821 6767 6526 4598 4642 5271 * 4218 5370 1291 * 3652 7007 3123 4653 4760 * 6052 77 16 * 6529 * * * 0 6731 0 1000 V 78 3303 6735 * 6665 4802 5198 * 2095 6264 2363 4421 5371 * 5686 4114 * 5382 2563 6717 5364 78 0 * * * * * 0 6737 0 1758 E 79 6423 * 3941 2815 5552 5764 4672 7046 2097 4979 * 3174 * 4864 2856 3687 3870 * * * 79 0 * * * * * 0 6737 0 1758 N 80 5000 * 4253 6513 * 3945 * * 1890 3815 6651 1902 5416 4219 3138 6999 * * * 5413 80 0 * * * * 1154 861 6737 0 1758 D 81 6561 * 1011 3628 * 6190 * 6481 4528 6342 * 3427 * 4314 5801 2627 6827 * * * 81 0 * * * * * 0 6740 0 1303 A 82 3251 6213 4525 5714 6604 6561 * 3185 3652 3501 5232 5328 2671 6775 6187 6677 3269 2668 * 5789 82 0 * * * * * 0 6740 0 1303 S 83 2126 * 3123 1675 5354 5769 6429 * 4022 * * 5845 * 4793 6827 3402 5688 4305 * * 83 17 6397 * 0 * * 0 6740 1000 1303 K 84 2723 * 5863 3803 6752 4571 4450 3190 2495 3934 4945 4884 3474 * 4310 5389 6245 5381 * 4559 84 0 * * * * 0 * 6740 0 1303 I 85 4850 6407 * * 4718 * * 1586 * 1313 4598 * * * 6057 * * 3175 * 6279 85 33 6197 6756 1585 585 * * 6733 1000 0 D 86 3021 6438 1764 2345 6052 5672 5255 * 3750 * 6761 3922 5127 4993 4373 5826 6754 5129 * * 86 0 * * * * * 0 6727 0 1000 L 87 3273 * 4143 1286 * * 5893 6763 5007 6722 7002 3345 5560 4306 4245 4475 3995 5332 * * 87 0 * * * * * 0 6727 0 1000 V 88 2219 3990 * * 6756 5766 * 3240 * 3098 6653 7199 * 6689 6052 6702 5233 1343 * * 88 0 * * * * * 0 6727 0 1000 L 89 4818 7145 5014 4031 * 5351 4872 2167 4832 2753 5610 5893 * 3955 2664 5283 5624 3396 * * 89 0 * * * * 0 * 6727 0 1000 N 90 3936 5899 4206 3275 * 3092 5699 6057 2677 * 5711 4545 3627 4629 3695 3278 3858 6347 7011 * 90 0 * * * * * * 6733 0 0 V 91 4682 6443 * 6756 6166 5422 4746 2120 * 1944 3395 * * 4482 * * 6814 2525 * 4224 91 22 6057 * 0 * * * 6733 1000 0 A 92 4339 * * * 6492 * * 2135 * 1015 4035 * * * * * * 2817 * 6163 92 0 * * * * * * 6733 0 0 R 93 3507 * * 2822 * 3847 * 6897 3249 4969 4195 4286 * 3541 3428 2842 3018 6966 * * 93 0 * * * * * * 6733 0 0 G 94 6465 * 2699 1963 * 4524 * 4265 4486 * * 4396 3077 3631 5206 5235 3030 6038 * * 94 0 * * * * * * 6733 0 0 L 95 * * 5962 5799 5491 * 4977 2211 * 777 4978 * * * * * * 3635 * * 95 0 * * * * * * 6733 0 0 L 96 4309 * 6286 7018 6613 6677 * 5498 2300 3422 * 6133 * 5770 1146 3906 * 6294 * 5219 96 13 6756 * 2000 415 * * 6733 1000 0 E 97 5356 * 1898 1498 6438 4338 6997 * 6308 5962 * 4699 * 3766 * 3077 6957 5859 * * 97 0 * * * * * * 6733 0 0 A 98 934 * * * * 2285 * 6243 * * * * * * * 3978 2456 6302 * * 98 0 * * * * * * 6724 0 0 W 99 * * * * 2643 * * * * * * * * * * * * * 303 5101 99 0 * * * * * * 6724 0 0 R 100 3495 6160 3315 2569 6761 5761 4783 7150 2636 4788 6718 5449 * 3626 2971 4013 5047 6071 * 6345 100 0 * * * * * * 6710 0 0 E 101 3301 * 4113 1285 5968 3813 * 6334 5073 6862 6388 4946 * 2199 * * 5034 * * * 101 0 * * * * * * 6589 0 0 I 102 3860 * * * * * * 1246 * 2852 3643 * * * * * 5805 1872 * * 102 0 * * * * * * 6495 0 0 H 103 1783 * 5184 3821 * 4500 5921 5859 5958 4327 * 3771 3090 * 3412 2619 * * * 5647 103 0 * * * * * * 5999 0 0 S 104 1958 * 3992 5030 * * * 5401 2896 5280 5152 3603 4272 4572 3091 2956 * 6069 * * 104 0 * * * * * * 5856 0 0 D 105 3878 * 2584 3241 * * * * 3261 * * 3664 * 1814 3360 3850 5315 * * * 105 0 * * * * * * 5602 0 0 E 106 * * * 887 * * * * 2224 * * * * 2028 * * * * * * 106 0 * * 0 * * * 4792 0 0 //