HHsearch 1.5 NAME c3j21Z_ FAM FILE c3j21Z_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j21Z_.a3m DATE Wed Jan 9 14:36:31 2013 LENG 99 match states, 99 columns in multiple alignment FILT 103 out of 352 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.3976 -1.5830 SEQ >ss_dssp CHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEESSCSSCSHHHHHTC >sa_dssp EECCDBBDDADEEBECCDCCEDACECAEEDDBDBABAABECEEEDCECADDBAEEDEBCCCDCECDEBDBCDBCDEEDECAAAAACEDCEBEBCEDBEE >ss_pred CCHHHHHHHHHHCCCEEECHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHC >ss_conf 987899999997399672489999999759945999957999889999999998669989998599899998519966338999866582468998509 >Consensus mxxxxxLxlaxkagklxxGxxxvxkxixxxkxklViiAxDxxxxxxxxixxxcxxxxVpixxxxxtxxeLGxaxGkxxxxsxixIxdxgxsxxlxlxxx >c3j21Z_ MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKILAIAKR >UniRef50_A5N841(9-88:105) Predicted ribosomal protein n=3 Tax=Clostridium RepID=A5N841_CLOK5 E=6e-07 s/c=0.69 id=19% cov=69% --------LIKRAGKLLEGYNICEEKIKKNKVYFIVMCHDISENTWNKFLNYSNKYKIPIAKLSYSKEELGNAIG------------------------ >UniRef50_B7CAI4(8-90:96) Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAI4_9FIRM E=2e-05 s/c=0.61 id=22% cov=80% ------IQLAYRAGKVAKG-DSLLVSIQKSQAKLVLVSSLCGQNRMKKIQDKCTYYNVPYRVVEPSVLDDVS----YKKMSAIAIVDSG---------- >UniRef50_C1I8G9(7-79:79) Ribosomal protein L7Ae family protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I8G9_9CLOT E=3e-05 s/c=0.68 id=16% cov=75% -------------GNKLIGIKQCTKSIKNGKGTVLYVAKDAEINLTKSLIDLGIEKNVKII-YINTMKELGKMCSIDVKASAVLVLE------------ >UniRef50_B0MQX3(1-89:101) Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQX3_9FIRM E=8e-10 s/c=0.73 id=18% cov=89% MNFLSTLGLCRKSGRLIHGFDPVCEELKNPKSKIagVILASDVSEKTQKEMRFFCDKYSALLSQCDCTMDEIKSVLGK--RTGVLAVLNEG--------- - >UniRef50_Q9P7H0(42-137:154) H/ACA ribonucleoprotein complex subunit 2 n=8 Tax=Dikarya RepID=NHP2_SCHPO E=6e-12 s/c=0.75 id=19% cov=92% ----KTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPmDVISHIPVLCEDNNVP-YLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMS---- >UniRef50_Q9SKZ3(25-139:144) 40S ribosomal protein S12-2 n=13 Tax=Embryophyta RepID=RS122_ARATH E=3e-07 s/c=0.49 id=22% cov=101% MDVSTALELTVRKsrayGGVVRGLHESAKLIEKRNAQLCVLAEDCnQPDYVKLVKALCADHSIKLLTVPsaktlgewagLCKIDSEGNARKVVGCSCLVI KDFGeETTALNIVKK >UniRef50_Q2RMS1(125-217:263) LSU ribosomal protein L7AE n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RMS1_RHORT E=4e-05 s/c=0.53 id=21% cov=87% --------LARKAGQAVAGFEKVKSWVHTGRAGMVLEAWDGSEGGRAKLG--AETWGMPVFR-AMDRLALGRAFAREQAVHAA--LEPGglarrlEADLI RLAR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3672 * * 118 * * * * * * * * * 1 0 * * * * * * 4151 0 0 D 2 * * 1183 2737 * * * * * * * 1665 * * * 3407 * * * * 2 0 * * * * * * 5001 0 0 L 3 4866 * * * 4266 * * 1818 * 1238 * 4765 * * * * * 2563 * * 3 52 * 4822 * * * * 5545 0 0 A 4 2473 4674 3239 3354 4928 5179 * * 4881 4277 4764 3972 * 4663 4876 2836 4733 * * 3658 4 0 * * * * * 0 5556 0 1000 F 5 * * * * 3340 * * 4825 2504 3951 4677 5209 * * 2103 1992 3742 * * * 5 0 * * * * * 0 5602 0 1000 E 6 2151 * * 3105 * 4978 3970 * 3376 3838 4707 * * 3975 * 2644 3192 5295 * * 6 44 5062 * 0 * 0 * 5600 1000 1000 L 7 * * * * * * * 4573 * 222 5652 * * * * * * 4125 * 5420 7 0 * * * * * * 6370 0 0 R 8 4852 * * 4845 * 2066 5514 * 2747 5633 * 5690 5830 2357 3231 3329 4402 * * 6030 8 0 * * * * * * 6418 0 0 K 9 4963 * 3958 5899 6145 * * 3920 2740 1080 6067 * * 6087 4571 5018 3855 6348 * * 9 0 * * * * * * 6715 0 0 A 10 654 4950 * * * * * 3805 5953 4102 6047 * * * * 4523 5050 3359 * * 10 0 * * * * * * 6766 0 0 M 11 3811 * * 6177 * * 5322 3222 2442 5407 2956 4843 * 4285 2993 4569 6468 3086 * 3981 11 20 * 6153 * * * * 6737 0 0 E 12 4550 * * 5276 * * 6668 6167 1045 * 5367 3812 * * 1762 4934 * * * * 12 41 5975 6354 2000 415 * 0 6925 1000 1000 T 13 1191 * * 4373 * 5339 4879 * 4235 * 6749 4991 * 6484 4454 2354 3373 * * 6353 13 24 5935 * 2000 415 * 0 6928 1000 1440 G 14 * * 4562 6084 * 621 * * 3173 * * 4665 * * 3136 6366 * 5929 * * 14 0 * * * * * 0 6940 0 1440 K 15 5229 6283 6400 4909 6513 4822 5675 * 1379 5627 * 3197 * 3705 2204 5561 * 5575 * * 15 0 * * * * 1000 1000 7129 0 1440 V 16 4696 6007 * * 5332 * * 3447 5014 1176 * * * * 5556 * 5783 2196 * 3346 16 29 6703 6578 0 * 0 * 7192 1000 1000 V 17 3296 6417 * 5200 5135 * * 3443 4256 2826 * * * * * 4070 3223 1514 * 5122 17 0 * * * * * 0 7183 0 1000 L 18 4845 6697 * 4809 3616 * 5190 2664 3619 3147 4476 * * * 4421 2750 4159 2868 * 5290 18 0 * * * * * 0 7196 0 1000 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 54 * 4761 * * * 0 7329 0 1000 S 20 3140 * 4763 4890 2680 5831 6032 3231 5588 2874 6232 6426 * 4589 * 4060 4142 3330 * 3628 20 17 * 6421 * * 526 1710 7224 0 2401 N 21 * * 2483 3345 5694 * 4656 * 2038 6733 * 2476 * 5009 2853 5370 4734 * * * 21 0 * * * * 0 * 7328 0 1700 E 22 3958 6672 5564 1837 * 5237 6874 6634 3777 5728 5555 5626 4356 2271 4166 3394 6528 5117 * * 22 0 * * * * * * 7340 0 0 T 23 3534 3829 * * * 6209 * 3759 * 4206 * * * * * 4087 2324 1174 * * 23 0 * * * * * * 7340 0 0 I 24 4054 5105 5999 3081 5400 6273 6840 3688 4129 1945 4683 4811 * 6390 3823 * 3167 4519 6741 5988 24 0 * * * * * * 7340 0 0 R 25 3763 * 4430 2796 * 6096 * 5416 1279 5700 * 5829 * 6793 2664 4372 5726 6069 * * 25 11 * 7062 * * * * 7422 0 0 L 26 1620 5729 5502 4081 5310 5090 4614 * 5163 3960 5730 3617 * 7036 6896 2491 4523 6841 6009 5309 26 16 6501 * 0 * * 0 7425 1000 1000 A 27 4493 5332 * * 6508 6883 * 1509 * 1716 4606 * * * 5983 * * 2408 * 6617 27 27 5752 * 601 1553 0 * 7425 1624 1000 K 28 5062 5895 5988 2650 * 6314 6015 4845 1990 3780 * 5418 * 3605 2280 5016 5913 4975 * * 28 45 5961 6096 1201 824 * * 7422 1686 0 T 29 3731 * 4613 3797 * 5078 5161 5914 1841 5202 4781 3829 * 5211 2850 2999 4878 * * * 29 30 6397 6836 0 * * 0 7391 1000 1000 G 30 6386 * 4731 5576 * 1236 5624 * 2459 5320 * 3401 6155 3969 3746 5031 * * * * 30 11 7018 * 0 * 964 1037 7386 1000 1726 G 31 5602 * 3844 2740 * 5511 6283 4958 1438 5398 * 4446 * 3788 3152 5796 4564 * * 6743 31 11 * 6998 * * 0 * 7417 0 1000 A 32 1470 5514 * * * 4679 6480 2925 4615 3969 6555 6241 4569 * 5634 4244 5220 2601 * * 32 16 6480 * 0 * 0 * 7425 1000 1000 K 33 4113 6786 6882 5737 5625 3728 4977 5151 1286 5257 * 6915 6314 4204 3568 3683 5263 6793 6133 5190 33 0 * * * * * * 7422 0 0 L 34 3884 3771 * 5881 3573 6512 * 3665 6835 1103 3455 * * * * 6836 * 3720 * 5792 34 20 6174 * 1000 1000 * * 7422 1000 0 I 35 5419 4623 * * 6003 * * 2608 * 2494 * * * * * * * 789 * * 35 0 * * * * * * 7422 0 0 I 36 * * * * 3279 * * 1697 * 1718 5332 * * * * * * 2175 * 4704 36 0 * * * * * * 7422 0 0 V 37 * 6708 * 5324 4863 * 7037 1907 * 1754 4070 * * * 6486 * 4612 2226 * 4831 37 0 * * * * * * 7422 0 0 A 38 449 4757 * * * 5505 * * * * * * 5659 * * 2781 4529 * * * 38 12 6924 * 3000 193 * * 7422 1000 0 K 39 3587 5852 5346 3569 * 4701 4665 6747 3593 5275 * 3114 3531 4879 5500 2024 3957 6512 6015 * 39 0 * * * * * * 7422 0 0 N 40 * 6433 595 * * * * * 6353 5083 * 2049 * 6622 * 5390 6808 * * * 40 9 7307 * 0 * * * 7422 1000 0 A 41 2042 2670 * * 6264 4482 6333 2722 * 3462 * * 6403 * 6096 5038 3719 2692 * * 41 113 3733 * 0 * * * 7422 3431 0 P 42 4225 * 3387 2672 * 4117 * 5517 * 6613 * 6449 2312 5185 7037 1558 5883 * * * 42 76 4286 * 2603 259 * * 7422 2698 0 K 43 4279 * 3094 2097 * 5374 * 4735 4757 * 4933 6915 2180 3498 5643 3487 6101 5324 * * 43 97 3942 * 1134 878 * * 7422 3122 0 E 44 4206 * 2855 3117 * 4947 3770 * 3596 4686 * 2280 6333 6515 3272 3911 4900 6620 5495 * 44 58 4668 * 1988 419 * * 7422 2718 0 I 45 5132 6729 5374 * 7072 4940 * 2980 6264 3131 4251 5758 * 3724 4516 3776 2184 3265 * 4143 45 0 * * * * * * 7422 0 0 K 46 4282 * * 6848 5532 6411 6216 2948 2387 3241 6069 * * 4934 2948 4849 4127 2497 6692 6556 46 0 * * * * * * 7422 0 0 D 47 3829 6747 3037 2827 * 4832 4940 * 2033 4136 7045 5829 * 4646 3564 4016 4307 5803 * 6831 47 14 6719 * 3000 193 * * 7422 1000 0 D 48 7067 6818 3506 3152 6881 5757 2854 6845 1647 3681 * 6010 4465 5000 4162 4922 6333 6778 6729 * 48 8 7589 * 0 * * * 7422 1000 0 I 49 5099 6284 * * 3237 * * 1844 * 1641 4553 * * * * * * 2613 6762 4738 49 44 7523 5336 0 * * * 7422 1000 0 Y 50 5442 * 4956 2798 5712 5994 * 3252 3424 2933 6378 5731 3261 4221 3536 5684 3933 3839 * 7096 50 33 7170 5994 1000 1000 1019 981 7374 1000 1647 Y 51 3079 6177 3019 4528 3730 5694 4201 4915 3651 5633 5554 4547 5500 4722 3742 3506 6518 4788 * 3551 51 0 * * * * 951 1051 7369 0 1651 Y 52 6383 6681 7132 5296 4117 6085 5993 4627 3064 1466 3913 * * 4652 4231 * 5058 5632 5710 3226 52 32 6231 6879 2000 415 0 * 7377 1000 1000 A 53 1623 1146 6564 * * 5272 * 4697 * 6320 6496 5647 * * * 3548 5681 * * * 53 18 * 6366 * * * 0 7426 0 1000 K 54 3442 * 4300 2540 5778 6468 7066 5293 2449 5088 5505 3945 6645 4489 2612 5074 4388 5172 * * 54 0 * * * * 981 1019 7406 0 1592 L 55 3617 6435 5140 2342 4805 6106 6509 5191 2859 3238 6090 4334 6479 3590 4407 4370 4861 6335 * 4379 55 38 5759 7047 1931 439 * 0 7421 1686 1000 S 56 3201 6411 6088 4529 5307 4691 4131 6842 2934 5257 4576 3749 6489 3686 3775 3952 5423 * 5978 2711 56 46 6237 5775 0 * 977 1023 7422 1000 1553 D 57 5114 6271 4834 3917 * 2112 4356 5587 2704 6091 * 2231 * 4523 4111 3769 * * * * 57 0 * * * * 1540 608 7416 0 2146 I 58 6162 4709 * * * 6236 * 1481 6282 5539 5976 * * 5574 * 6501 4474 1155 * * 58 47 * 4955 * * * 0 7414 0 1707 P 59 5296 * 4576 4903 * * 4927 5931 3941 5273 * * 626 4949 6141 5091 5546 6187 * * 59 205 * 2916 * * 1359 713 7391 0 3095 V 60 4948 4364 * 5931 5385 * * 2252 * 2277 5189 * * * * * 5246 1888 4456 3427 60 119 * 3658 * * 96 3954 7377 0 4730 Y 61 4514 4458 * 5051 3753 * 4481 2201 5464 4324 * 6855 * 6575 4405 5514 5423 2742 * 2248 61 88 * 4086 * * 170 3170 7261 0 3844 E 62 5088 4412 6429 3232 5317 5569 4430 5142 3958 4347 * 4746 * 3338 4880 4719 3172 2345 * 4176 62 223 6544 2914 1585 585 231 2755 7496 1000 3290 F 63 5262 5145 * * 1656 6233 6135 3892 * 3688 3889 * * * * * 5412 2752 4524 2531 63 146 6056 3623 0 * 0 * 7264 1000 4404 E 64 2994 5310 3523 3347 5210 3912 6219 6647 4568 4998 * 5574 2736 5717 6865 3478 5748 2795 * 5471 64 110 4786 4749 2932 203 0 * 7500 1852 3466 G 65 4859 6211 5988 4926 3412 2048 5796 * 5869 2111 5138 4935 4771 6575 5792 3971 5122 4614 * 4588 65 29 * 5637 * * 0 * 7292 0 2459 T 66 5675 5254 2887 6649 * 5244 * * 5746 5773 5655 3183 * * 5479 1944 1678 5583 * * 66 38 6668 5931 0 * 0 * 7419 1000 1378 S 67 5496 6542 * 5418 6329 6852 * * 1592 * 3103 3942 6414 4547 2335 2954 6305 6037 * * 67 20 * 6163 * * 946 1057 7434 0 1719 V 68 3404 * 3844 2297 * 5251 6660 3432 3147 3635 6898 4755 * 4392 3178 4628 5669 4424 * * 68 32 * 5528 * * 1000 1000 7398 0 1578 E 69 3568 * 2942 1234 * * 6401 6810 3392 5348 * 6732 * 4561 3716 4147 4817 * * * 69 0 * * * * 0 * 7369 0 2351 L 70 * 6269 6072 * 6257 * * 2767 * 461 4500 * * * * 6256 6353 5924 * * 70 17 * 6405 * * * * 7524 0 0 G 71 3586 * * 5268 * 495 * * 6065 * * 5471 * * * 3248 5438 6039 * * 71 0 * * * * * 0 7404 0 1000 T 72 3963 * 4839 3881 5696 4266 4460 4860 2769 4442 4878 5483 6466 3483 2518 3685 4304 6516 * 5783 72 22 * 6024 * * 0 * 7404 0 1000 L 73 1171 4805 * 6432 * 5988 6569 3220 6301 2916 5575 6211 5978 * * 4497 6295 3439 6590 5667 73 0 * * * * * 0 7480 0 1000 L 74 3567 2073 * * 3719 * * 3011 * 2259 5045 5988 * * * 5479 4466 2687 * * 74 13 6786 * 0 * * 0 7480 1000 1000 G 75 5933 6825 6582 6246 * 533 4815 * 4585 4813 * 4139 6525 5080 5282 5366 * * * * 75 32 5496 * 2297 328 * 0 7261 1659 1000 K 76 * * * * * 6553 * 3403 1136 2873 5355 * * 4879 2621 5207 4883 5553 * * 76 109 6774 3969 0 * 0 * 7252 1000 1000 P 77 6565 * 4285 2881 6505 4105 5292 * 3054 6766 * 3958 3634 4264 4121 2723 3497 4167 * 5157 77 200 * 2952 * * 2117 378 7177 0 2745 F 78 5414 * 5231 4584 2872 6111 4678 4787 3487 5405 5393 5725 4128 5690 2951 4460 * 2369 * 3619 78 92 * 4010 * * 0 * 6971 0 4868 V 79 5048 * 6406 6295 5611 2759 6672 * 3146 6050 6062 4341 2897 5053 2059 3587 4803 5695 * 4959 79 114 * 3715 * * 330 2289 7227 0 2948 V 80 2272 3120 * * 5185 * * 2629 * 4547 5128 * * 6516 6196 5454 3401 1860 * * 80 35 * 5370 * * 227 2777 7082 0 3078 A 81 1884 3555 * * 6210 3736 5125 5654 5172 * 5846 6581 * * 5671 1641 3326 6469 * * 81 32 * 5528 * * 1572 592 7201 0 1982 S 82 2211 2443 * * 5873 * * 2984 * 6034 6650 * * * * 4151 4728 1567 * * 82 36 6071 6661 2585 263 447 1908 7230 1000 2370 L 83 2816 * * * 5213 * * 1874 * 1949 4493 * * * * 6139 * 2158 * 5931 83 58 * 4663 * * 0 * 7235 0 1551 A 84 1406 4002 * * 6440 1824 * * * 4483 5415 * * 6077 * 3402 6537 3681 * * 84 19 * 6223 * * 574 1608 7178 0 2034 I 85 * * * * 4956 * * 851 * 3554 * * * * * * * 1608 * * 85 17 * 6417 * * 1056 946 7159 0 1634 V 86 4657 * 5800 * 6912 * * 3747 3557 1715 5508 6259 * 6275 6267 4759 2064 3045 * 6399 86 0 * * * * 0 * 7118 0 1597 D 87 5687 * 709 2666 * * 6194 * 4442 * * 3957 6560 6469 * 4363 5909 * * * 87 44 5063 * 830 1193 * * 7116 1718 0 P 88 3027 * 4652 2176 4887 6116 * 4948 5133 6018 5471 4573 2785 3014 4987 3668 * 6109 * 4899 88 64 4517 * 0 * * * 6991 1814 0 G 89 4422 * 4852 4155 * 564 * * 3357 * * 3987 5300 * * * * * * * 89 150 3340 * 1209 817 * * 6819 2468 0 E 90 3735 * 2355 1731 2671 4392 * 5541 5626 4543 5366 4423 * 5242 5484 5709 * * * * 90 0 * * * * * * 6446 0 0 S 91 1445 * * * * 5350 * 5289 3763 * * * * * * 1187 4426 5435 * * 91 96 3951 * 0 * * * 6437 1858 0 K 92 4462 * 1994 2448 * 5000 * * 1976 * * 4389 * 5471 3157 5218 5283 * * * 92 79 4224 * 0 * * * 6369 1666 0 I 93 4178 * 4583 5234 5532 5290 * 1299 3344 2179 * 5324 * * 5196 * 5199 5367 * * 93 0 * * * * * * 6282 0 0 L 94 5471 * 5015 5199 * * * 2699 3221 1193 3791 * * * * * 3400 5383 * 5075 94 0 * * * * * * 6282 0 0 A 95 3194 * 3662 3618 * 4755 * 5060 3997 * * 2704 4786 4190 2514 2465 * * * * 95 0 * * * * * * 6138 0 0 I 96 * * * * 3277 * * 2018 * 1186 3207 * * 4898 * * * 5232 * 4568 96 0 * * * * * * 5897 0 0 A 97 3170 * * 4738 * * * 3264 3702 1380 4772 * * * * * 4469 2658 * 4438 97 0 * * * * * * 5804 0 0 K 98 * * * 1898 * * * * 1062 * * * * 3285 2737 * * * * * 98 0 * * * * * * 5224 0 0 R 99 * * * 1649 * * * * 1381 * * * * 2730 2771 * * * * * 99 0 * * 0 * * * 4408 0 0 //