HHsearch 1.5
NAME  c3gliO_
FAM   
FILE  c3gliO_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c3gliO_.a3m 
DATE  Sat Aug 28 16:53:06 2010
LENG  27 match states, 27 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.5657  5.4723 
SEQ
>ss_dssp
CCHHHHHHHHHTCCCCCCSCGGGTSCC
>sa_dssp
EDEEDDDCEEEEEEDEEEEEDEEEEEE
>ss_pred
CCHHHHHHHHHCCCEEEECCCCCCCCC
>ss_conf
962466898618100011184123689
>Consensus
xsrrdwxlqqlgxtqwxlrrpxalxge
>c3gliO_
TSRRDWQLQQLGITQWSLRRPGALQGE
>UniRef50_C6CDZ2(2-28:145) DNA polymerase III psi subunit n=2 Tax=Enterobacteriaceae RepID=C6CDZ2_DICDC  E=0.0003 s/c=1.71 id=75% cov=104%
ASRRDWLLQQLGMTQWVLRRPAALRGE
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
T 1    1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	1
       0	*	*	*	*	*	*	1167	0	0	

S 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	2
       0	*	*	*	*	*	*	1167	0	0	

R 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	3
       0	*	*	*	*	*	*	1167	0	0	

R 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	4
       0	*	*	*	*	*	*	1167	0	0	

D 5    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1167	0	0	

W 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	6
       0	*	*	*	*	*	*	1167	0	0	

Q 7    *	*	*	*	*	*	*	*	*	1000	*	*	*	1000	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1167	0	0	

L 8    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1167	0	0	

Q 9    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1167	0	0	

Q 10   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1167	0	0	

L 11   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1167	0	0	

G 12   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1167	0	0	

I 13   *	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1167	0	0	

T 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	14
       0	*	*	*	*	*	*	1167	0	0	

Q 15   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1167	0	0	

W 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	16
       0	*	*	*	*	*	*	1167	0	0	

S 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	1000	*	*	17
       0	*	*	*	*	*	*	1167	0	0	

L 18   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1167	0	0	

R 19   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	19
       0	*	*	*	*	*	*	1167	0	0	

R 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	20
       0	*	*	*	*	*	*	1167	0	0	

P 21   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1167	0	0	

G 22   1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1167	0	0	

A 23   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1167	0	0	

L 24   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1167	0	0	

Q 25   *	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	25
       0	*	*	*	*	*	*	1167	0	0	

G 26   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1167	0	0	

E 27   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	0	*	*	*	1167	0	0	

//