HHsearch 1.5 NAME c2rpaA_ FAM FILE c2rpaA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2rpaA_.a3m DATE Sat Aug 28 18:57:23 2010 LENG 77 match states, 77 columns in multiple alignment FILT 11 out of 15 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4130 -0.0799 SEQ >ss_dssp CCCCSSSSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCC >sa_dssp EEEEEEDADDCCDDBEDAEDCAEEDDCECACEDAEDABDDADECBEECEEEEDDDECDEDCEEBDECBEDBEEEDEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 94254519999999999999876266188999999999999999993187777579999999999999999974249 >Consensus xxxxxxslxxixxxvxxARxyAlxgnYdxsxxyYxgxxxqixkxxxsxxdxxxkxkWxxlxkeixxExxxVrxixxt >c2rpaA_ SDHMTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDIMKT >UniRef50_Q9BW62(1-72:490) Cluster: Katanin p60 ATPase-containing subunit A-like 1; n=21; Fungi/Metazoa group|Rep: Katanin p60 ATPase-containing subunit A-like 1 - Homo sapiens (Human) E=3e-16 s/c=1.19 id=55% cov=95% -----MNLAEICDNAKKGREYALLGNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIVST >UniRef50_Q9SNV7(6-74:558) Cluster: P60 katanin; n=1; Chlamydomonas reinhardtii|Rep: P60 katanin - Chlamydomonas reinhardtii E=3e-05 s/c=0.72 id=24% cov=91% -------VQAITIAVTTGRDCAMSGDYSAGCTYYENAVELITRYVRTLGDPHAIRQWSALLKEVQDEHSSVRQCDK- >UniRef50_Q4CYK7(44-111:323) Cluster: Katanin, putative; n=1; Trypanosoma cruzi|Rep: Katanin, putative - Trypanosoma cruzi E=0.0002 s/c=0.68 id=21% cov=87% --------DDMGKSLRLARRYAMESNYEVAVAFYTGLDKDLEAFAQCSGNAPGRARWVLLREKVAEECSLVRSL--- >UniRef50_Q5BZR3(1-72:177) Cluster: SJCHGC03332 protein; n=1; Schistosoma japonicum|Rep: SJCHGC03332 protein - Schistosoma japonicum (Blood fluke) E=1e-18 s/c=1.30 id=51% cov=95% -----MSLSEIVENVKQARELALLGNYDSSLTYYSVGLAQLKKFTVSISEANRKQQWQTVRQELADEYELVKDVNQT >UniRef50_Q9SEX2(7-75:523) Cluster: Katanin p60 ATPase-containing subunit; n=14; Eukaryota|Rep: Katanin p60 ATPase-containing subunit - Arabidopsis thaliana (Mouse-ear cress) E=2e-18 s/c=1.35 id=39% cov=90% ------SLAGLQDHLKLAREYALEGSYDTSVIFFDGAIAQINKHLNTLDDPLARTKWMNVKKAIMEETEVVKQL--- >UniRef50_A2E096(11-73:489) Cluster: ATPase, AAA family protein; n=1; Trichomonas vaginalis G3|Rep: ATPase, AAA family protein - Trichomonas vaginalis G3 E=1e-13 s/c=1.22 id=22% cov=83% --------------VNSARSCGLNGDYDECLSAYSNAKKEAEKEISLCRNIIEKGKWNSLVKDIVQEEAAIRRLKST >UniRef50_A8BIE4(3-73:509) Cluster: Katanin; n=1; Giardia lamblia ATCC 50803|Rep: Katanin - Giardia lamblia ATCC 50803 E=6e-16 s/c=1.19 id=30% cov=86% ------TLGDCIEDLISARNYVQSGNYTPAQTCYDGFIASLNRYLNTLGPSAEKERWQEIKQQIKQEVASV------ >UniRef50_A4I3C0(79-142:602) Cluster: Katanin, putative; n=5; Trypanosomatidae|Rep: Katanin, putative - Leishmania infantum E=2e-14 s/c=1.25 id=29% cov=84% --------SEIVKAVHKARNCALYCDYKTALQYYSSIRNEINLHTRSIDDVLC-SQWMSLLGELESEAQIIRD---- >UniRef50_A2EMS7(4-74:512) Cluster: ATPase, AAA family protein; n=2; Trichomonas vaginalis G3|Rep: ATPase, AAA family protein - Trichomonas vaginalis G3 E=2e-14 s/c=1.12 id=24% cov=81% -------------DVSEARQQARIEDYENSIKYYDQALEKIEDEIAVCHNIETNQKWNKMQKEVRDEKDSVLRI--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 D 2 * * 0 * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 H 3 * * * * * * 0 * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 M 4 * * * * * * * * * * 0 * * * * * * * * * 4 0 * * * * * * 1000 0 0 T 5 * * * * * * * * * * * * * * * * 0 * * * 5 0 * * * * * * 1000 0 0 M 6 * * * * * * * * * * 0 * * * * * * * * * 6 0 * * * * * * 1755 0 0 S 7 * * * * * * * * * * * 2842 * * * 645 2177 * * * 7 0 * * * * * * 2446 0 0 L 8 * * * * * * * * * 535 * * * * * * * 1691 * * 8 0 * * * * * * 2828 0 0 Q 9 2374 * 2105 * * 2909 * * * * * * * 2153 * 2206 * * * * 9 0 * * * * * * 3426 0 0 M 10 2902 * 1844 1370 * 3186 * * * * 3459 * * * * * * * * * 10 0 * * * * * * 3426 0 0 I 11 * 2909 * * * * * 709 * 3186 2782 * * * * * * * * * 11 0 * * * * * * 3426 0 0 V 12 * 2555 * * * 2782 * 2909 * * * * * 3186 * * 2902 1701 * * 12 0 * * * * * * 3426 0 0 E 13 * * 2374 1321 * * * 2902 1873 * * * * * * * * * * * 13 0 * * * * * * 3426 0 0 N 14 2143 * 2064 * * * 3342 * * * * 1684 * * * 3004 * * * * 14 0 * * * * * * 3720 0 0 V 15 3892 * * * * * * * * 1771 * * * * * * 3762 821 * * 15 0 * * * * * * 3877 0 0 K 16 * * * * * * 3319 3368 1428 * * 3254 * * 3168 3116 3322 * * * 16 0 * * * * * * 3877 0 0 L 17 * * * 3116 * * * * 2578 1895 3762 * * 3775 * 2310 3322 * * * 17 0 * * * * * * 3877 0 0 A 18 398 * * * * 2053 * * * * * * * * * * * * * * 18 0 * * * * * * 3877 0 0 R 19 * * * * * * * * * * * * * * 0 * * * * * 19 0 * * * * * * 3877 0 0 E 20 * * 3322 1428 * * * * * * * 2344 * 3116 3168 3254 * * * * 20 0 * * * * * * 3877 0 0 Y 21 * 1713 * * * * * * * 3775 * * * 3116 * * * * * 981 21 0 * * * * * * 3877 0 0 A 22 325 * * * * 3254 * * * * * * * * * * * 3368 * * 22 0 * * * * * * 3877 0 0 L 23 * * * * * * * * * 794 2243 * * 3368 3116 * * * * * 23 0 * * * * * * 3877 0 0 L 24 * * * 2349 * * * 3116 * 1803 * 3254 * * * 2345 * * * 3319 24 0 * * * * * * 3877 0 0 G 25 * 3319 * 3116 * 571 * * * * * * * * * 3168 * * * * 25 0 * * * * * * 3877 0 0 N 26 * * 1251 * * * * * * * * 1015 * * * 3557 * * * * 26 0 * * * * * * 3877 0 0 Y 27 * * * * * * * * * * * * * * * * * * * 0 27 0 * * * * * * 3877 0 0 D 28 * * 1312 1735 * * * * 3319 * * * * * * 3322 3368 * * * 28 0 * * * * * * 3877 0 0 S 29 3322 * * 3254 * * * * * * * 3116 3368 * * 2231 1950 3168 * * 29 0 * * * * * * 3877 0 0 A 30 1393 3254 * * * 3322 * * * * * * * * * 1271 * * * * 30 0 * * * * * * 3877 0 0 M 31 * 3322 * * * * * 3116 * 1508 2837 * * 3368 * * * 2349 * * 31 0 * * * * * * 3877 0 0 V 32 3168 * * * * * * 3557 3116 * * * * 3319 * 3254 1890 2227 * * 32 0 * * * * * * 3877 0 0 Y 33 3254 3368 * * 2349 * * * * * * * * * * * * * * 732 33 0 * * * * * * 3877 0 0 Y 34 * * * * 3557 * * * * * * * * * * * * * * 128 34 0 * * * * * * 3877 0 0 Q 35 * * 1751 3322 * * * * * * * * * 2227 * 1847 3168 * * * 35 0 * * * * * * 3877 0 0 G 36 * * * * * 981 * * * * * 2288 * 3116 * 3319 * 3775 * * 36 0 * * * * * * 3877 0 0 V 37 1304 * * * 3368 3775 * 3319 * 3168 * * * * * * * 2227 * * 37 0 * * * * * * 3877 0 0 L 38 * * 3168 * * * * 2460 3254 1579 3892 * * * 3319 * * 3322 * * 38 0 * * * * * * 3877 0 0 D 39 1972 * 3785 2216 * * * * 2210 * * 3319 * 2826 * * * * * * 39 0 * * * * * * 3877 0 0 Q 40 * * 3168 2287 * * * * 3116 3322 * * * 1428 * 3368 * * * * 40 0 * * * * * * 3877 0 0 M 41 3254 * * * * * * 885 * 1831 3785 * * * * * * * * * 41 0 * * * * * * 3877 0 0 N 42 * * * 1593 * * * * 3775 * * 1496 * 2826 * * 3322 * * * 42 0 * * * * * * 3877 0 0 K 43 3168 * 3116 * * * * * 1290 3319 * * * * 1921 * * * * * 43 0 * * * * * * 3877 0 0 Y 44 * * * 2184 2440 * 1986 * * 3762 * * * * * * * * * 1892 44 0 * * * * * * 3877 0 0 L 45 3168 3892 * * * * * 2184 * 1608 * * * * * * 2529 3322 * * 45 0 * * * * * * 3877 0 0 Y 46 3116 * * * * * * * * * * 2460 * 2485 2321 3254 3762 3775 * 3785 46 0 * * * * * * 3877 0 0 S 47 * 3168 * * * * * * * 3254 * * * * * 1370 1827 3116 * * 47 0 * * * * * * 3877 0 0 V 48 * 2184 * * * * * 2529 * 1827 * * * * * 3168 * 2227 * * 48 0 * * * * * * 3877 0 0 K 49 * * 2433 * * 1699 2403 * 3785 * * * * * 2538 3775 * * * * 49 0 * * * * * * 3877 0 0 D 50 * * 1234 2769 * * * * * * * 1593 3368 * * * * * * * 50 0 * * * * * * 3877 0 0 T 51 2440 * * * * * * 2184 * * * * 1617 * * 3368 3785 3319 * * 51 0 * * * * * * 3877 0 0 H 52 2607 * * 3116 * * 2535 3254 * 2433 * 3775 3168 3762 * * * * * * 52 0 * * * * * * 3877 0 0 L 53 2435 3319 * 2310 * 3168 * 3892 * 3785 * * * * 2769 * 3116 * * * 53 152 * 3319 * * * * 3877 0 0 R 54 * * * * * * * 3117 1107 * * 3017 * * 1751 * * * * * 54 0 * * * * 0 * 3681 0 1000 Q 55 3168 * * 3368 * 2538 3762 * * * * * * 1938 3322 3319 3557 * * * 55 0 * * * * * * 3877 0 0 K 56 * * * * * * * * 1168 * * * * 1528 2264 * * * * * 56 0 * * * * * * 3877 0 0 W 57 * * * * * * * * * * * * * * * * * * 0 * 57 0 * * * * * * 3877 0 0 Q 58 * * * * * * * * * * 2433 2184 * 1383 * 3322 * 3168 * * 58 0 * * * * * * 3877 0 0 Q 59 3322 * * 3368 * * * * 3116 3168 * 3557 * 2837 * 2287 2769 * * * 59 0 * * * * * * 3877 0 0 V 60 * * * * * * * 2552 * 1265 3116 * * * * * * 1747 * * 60 0 * * * * * * 3877 0 0 W 61 * * * * * * * * 2460 2321 * * * 3116 1620 * * 3254 3785 * 61 0 * * * * * * 3877 0 0 Q 62 * * * 3168 * 3319 * * 1304 * * * * 1383 * * * * * * 62 0 * * * * * * 3877 0 0 E 63 3557 * 3254 732 * * * * 3168 * * * * 3368 * * * * * * 63 0 * * * * * * 3877 0 0 I 64 * * * * * * * 1477 * 1670 * * * * * * * 1614 * * 64 0 * * * * * * 3877 0 0 N 65 2440 * * 3319 * * * * 3368 3892 3557 3785 * 3322 3116 3762 * 3254 * * 65 0 * * * * * * 3877 0 0 V 66 * * 1794 1924 * * * * * * * * * 1861 * 3319 * 3785 * * 66 0 * * * * * * 3877 0 0 E 67 * * * 0 * * * * * * * * * * * * * * * * 67 0 * * * * * * 3877 0 0 A 68 2533 3168 * 3254 * * 3322 * 3116 * * * * * * * 3557 3368 * 2224 68 0 * * * * * * 3877 0 0 K 69 2310 * 3116 1742 * * * * 3785 * * * * 3319 * 2243 * * * * 69 0 * * * * * * 3877 0 0 Q 70 3254 * * * * * 3762 3319 * 2440 * * * 2837 * 1680 * 3557 * * 70 0 * * * * * * 3877 0 0 V 71 * * * * * * * 2287 * * * * * * * * * 331 * * 71 0 * * * * * * 3877 0 0 K 72 * * * * * * * * 1271 3013 * * * * 1115 * * * * * 72 0 * * * * * * 3706 0 0 D 73 * * 1901 * * * * * * * * 3617 * 2242 2047 2343 * * * * 73 0 * * * * * * 3706 0 0 I 74 * 2968 * * * * * 1337 * 1392 * * * * * * * 3390 * * 74 0 * * * * * * 3499 0 0 M 75 * * 2243 * * * * * 2160 * 2808 2723 * * * * 2860 2910 * * 75 0 * * * * * * 2786 0 0 K 76 * * * * * * * * 1024 * * * * 2723 * 1487 * * * * 76 0 * * * * * * 2786 0 0 T 77 * * * * * * * * * * * * * * * * 0 * * * 77 0 * * 0 * * * 2341 0 0 //