HHsearch 1.5 NAME c2kkgA_ FAM FILE c2kkgA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kkgA_.a3m DATE Sat Aug 28 19:08:29 2010 LENG 35 match states, 35 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.6453 4.2429 SEQ >ss_dssp CCCCSSSCSSCCSSSCSSSCSSSCSSSCSSSCSCC >sa_dssp EEEDEEECEEECEEECEEEDEEECEDEDEEECEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >ss_conf 98775887787657877876578778766776679 >Consensus wgqphgggwgqphgggwgqphgggwgqphgggwgq >c2kkgA_ WGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * W 1 * * * * * * * * * * * * * * * * * * 0 * 1 0 * * * * * * 1000 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 1000 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1000 0 0 H 5 * * * * * * 0 * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 W 9 * * * * * * * * * * * * * * * * * * 0 * 9 0 * * * * * * 1000 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 Q 11 * * * * * * * * * * * * * 0 * * * * * * 11 0 * * * * * * 1000 0 0 P 12 * * * * * * * * * * * * 0 * * * * * * * 12 0 * * * * * * 1000 0 0 H 13 * * * * * * 0 * * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 W 17 * * * * * * * * * * * * * * * * * * 0 * 17 0 * * * * * * 1000 0 0 G 18 * * * * * 0 * * * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 Q 19 * * * * * * * * * * * * * 0 * * * * * * 19 0 * * * * * * 1000 0 0 P 20 * * * * * * * * * * * * 0 * * * * * * * 20 0 * * * * * * 1000 0 0 H 21 * * * * * * 0 * * * * * * * * * * * * * 21 0 * * * * * * 1000 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 G 23 * * * * * 0 * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 G 24 * * * * * 0 * * * * * * * * * * * * * * 24 0 * * * * * * 1000 0 0 W 25 * * * * * * * * * * * * * * * * * * 0 * 25 0 * * * * * * 1000 0 0 G 26 * * * * * 0 * * * * * * * * * * * * * * 26 0 * * * * * * 1000 0 0 Q 27 * * * * * * * * * * * * * 0 * * * * * * 27 0 * * * * * * 1000 0 0 P 28 * * * * * * * * * * * * 0 * * * * * * * 28 0 * * * * * * 1000 0 0 H 29 * * * * * * 0 * * * * * * * * * * * * * 29 0 * * * * * * 1000 0 0 G 30 * * * * * 0 * * * * * * * * * * * * * * 30 0 * * * * * * 1000 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 1000 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1000 0 0 W 33 * * * * * * * * * * * * * * * * * * 0 * 33 0 * * * * * * 1000 0 0 G 34 * * * * * 0 * * * * * * * * * * * * * * 34 0 * * * * * * 1000 0 0 Q 35 * * * * * * * * * * * * * 0 * * * * * * 35 0 * * 0 * * * 1000 0 0 //