HHsearch 1.5 NAME c2kj6A_ FAM FILE c2kj6A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kj6A_.a3m DATE Sat Aug 28 17:21:21 2010 LENG 97 match states, 97 columns in multiple alignment FILT 110 out of 487 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.1 EVD 0.4211 -0.5276 SEQ >ss_dssp CCCCCCCCCCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC >sa_dssp EEEEEEEEEEEEDBCDBCCCCDEEEEDECDCECDAECCBEDDCEDEEEEEEEECECCDDCBCCEEEDEDCEEDBCEECBDEDCEDECBEBDCCBEEE >ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCEECCCCCCHHHCCCCCCCEEEEEECCC >ss_conf 9745315668885699999994788349999977666689999999998589976769999618877431132786558872987888999997386 >Consensus xxxxxxxxxxxxxxixlxItxxxxxxxxxexxvxxxxTVxxLKxxixxxxgipxxxqrLxxxxxxxxxxxxlxxdxxtLxxygixdGxxIhvvdxxP >c2kj6A_ MGHHHHHHSHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP >UniRef50_B8C5G5(487-575:625) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C5G5_THAPS E=9e-09 s/c=0.69 id=17% cov=90% ----------GEDVINVTIRSMAASSCDVEplqKRLPRSLQVGRIKAMCARAFGLDIDLQILHFRIEGDPFPTELDDADHSLVYYGVTDGAEILVNEVD- >UniRef50_O74803(1-75:368) UV excision repair protein rhp23 n=1 Tax=Schizosaccharomyces pombe RepID=RHP23_SCHPO E=2e-07 s/c=0.76 id=16% cov=77% ----------------MNLTFKNLQQQKFVISdVSADTKISELKEKIQTQQNYEVERQKLIY-------SGRILADDKTVGEYNIKEQDFIVCMVSRP >UniRef50_Q6NVS8(1-80:370) Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 n=4 Tax=Xenopus RepID=Q6NVS8_XENTR E=0.0002 s/c=0.58 id=21% cov=39% -----------DGEVTLLIRSPSLRQEEREISAPRNCTVRELKTQLRQ------------------------------------------------- >UniRef50_A8XF46(156-238:1901) Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XF46_CAEBR E=2e-09 s/c=0.77 id=12% cov=84% ----------AEDEQQVQVTVKTLDDREVSVTIGRNQPVQQLIDEARRQLNVTTGNQRIIF-------GGRVLNSTWTLQNAGITNGQTVHMIDRGP >UniRef50_Q5CTX4(9-89:309) Steroid reductase like intregral membrane protein with 4x transmembrane domains and an ubiquitin domain at its N-terminus n=6 Tax=Apicomplexa RepID=Q5CTX4_CRYPV E=2e-08 s/c=0.75 id=12% cov=85% -------ESQSDSIIRIYVKKRSGKHLAV-LNIDKDATVSDLKLQFYEEFHYYPERQWFNVASSNGEVL-----KEGKLEDYGIENGTTLYFKD--- >UniRef50_C4QWK8(4-84:240) Alpha-tubulin folding protein, similar to mammalian cofactor B n=1 Tax=Pichia pastoris GS115 RepID=C4QWK8_PICPG E=5e-06 s/c=0.65 id=20% cov=72% ---------------------------SSERRISPQWDIAHLKQRLEFVTGIPPADQKIWVYKTPTSNARYELKggEETTLNEFQIAPYTRIHVENIN- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1117 892 * * * * * * * * * 1 0 * * * * * * 1684 0 0 G 2 * * * * * 541 * * 1677 * * * * * * * * * * * 2 0 * * * * * * 2091 0 0 H 3 * * * * * * 673 * * * * * * 2364 * * 2486 * * * 3 0 * * * * * * 2833 0 0 H 4 * * * * * * 1379 3076 * * * 1384 * * * 3135 * * * * 4 0 * * * * * * 3747 0 0 H 5 * * * 3076 * * 972 * * * * 1998 * * * * 3042 * * * 5 0 * * * * * * 3747 0 0 H 6 * * * * 3041 * 1389 * * * * * * * 2021 * 2874 3135 * * 6 0 * * * * * * 3747 0 0 H 7 * * * * * * 1546 * * * * * * * * 2172 * * * 1199 7 0 * * * * * * 3989 0 0 H 8 * * 3896 3500 * 3912 3812 * 3573 * * * 3845 1663 2610 * 3763 * * * 8 0 * * * * * * 5244 0 0 S 9 * * * 2963 4030 2962 * * * 4103 * 2817 * 2881 * 1530 * * * * 9 0 * * * * * * 5497 0 0 H 10 4103 * 3898 * * 4210 4051 * 3836 4103 * 2885 2854 2235 * 2775 * * * * 10 0 * * * * * * 5497 0 0 G 11 2605 * * * * 986 * * * * * * * * 4514 2566 4236 3945 * * 11 86 4110 * 1585 585 * * 5843 1000 0 D 12 * 5021 1281 2162 4498 * * * * * * 3147 3439 4731 * 4401 * * * * 12 0 * * * * * * 6497 0 0 D 13 2970 * 1515 2443 * 3850 * * 5008 * * * * * * 2850 3804 5165 * * 13 0 * * * * * * 6970 0 0 S 14 5497 * 4418 2713 3546 4035 * 4870 5825 4198 * 5159 * 5297 5312 3024 2088 4300 * 4707 14 0 * * * * * * 7080 0 0 V 15 5216 * * * * * * 1345 * 3190 3501 * 5242 5190 * * * 1610 * * 15 0 * * * * * * 7356 0 0 H 16 * * * 3978 * * 6133 * 1948 4809 * 2917 5135 3370 2840 3991 2737 5840 * * 16 0 * * * * * * 7424 0 0 L 17 * * * * 5172 * * 2282 * 1320 4223 * * * * * * 1678 * * 17 0 * * * * * * 7623 0 0 H 18 * * 2775 4497 3033 * 3662 5044 4911 3510 5644 3140 6466 4424 3894 4692 3929 * * 3409 18 0 * * * * * * 7623 0 0 I 19 * 6073 * * 5138 * * 1033 * 3558 * * * * * * * 1383 * * 19 87 * 4095 * * * * 7566 0 0 T 20 5764 * * * * 5610 * 4918 2554 4404 * 4710 5123 5781 3088 3738 1425 4047 * * 20 23 * 6009 * * 877 1134 7539 0 2538 H 21 * * 5422 5331 3253 6175 1859 3310 5325 5429 * 3788 * * 5685 2990 3792 3825 5740 5094 21 107 * 3807 * * 0 * 7570 0 1975 A 22 3136 * 4735 * * 5896 * * 2911 5008 4911 3053 4208 5836 3379 1838 5372 4559 * * 22 89 * 4068 * * 1799 489 7467 0 2659 N 23 3700 * 3648 6005 * 3809 6100 5172 4152 3262 * 2318 4787 3608 * 3059 3331 6013 * * 23 35 6206 6561 2322 322 * 0 7520 1000 3722 L 24 4133 * 3495 * * 3246 5113 4420 * 1603 * 3822 5846 * * 2691 6283 4207 * 4869 24 19 * 6274 * * 1370 706 7694 0 3808 K 25 6194 * 2565 3893 * 6051 4623 * 2373 4485 6032 3608 4782 3160 4174 4210 3599 5701 * * 25 85 * 4129 * * 1022 978 7764 0 3384 S 26 3614 6141 5461 4509 * 1930 4676 * 3804 4588 * 4537 5559 2840 4220 3037 6094 5121 * * 26 83 4457 6603 1674 542 1126 884 7711 2277 3476 F 27 6250 5277 6448 3776 4097 4811 4669 4654 3197 4915 * 5639 * 3326 2189 4093 4250 3940 5676 5242 27 0 * * * * 2426 297 7669 0 2837 S 28 5113 * 3802 4137 4336 * 4294 5540 4833 4636 4092 6262 3968 5569 4575 2297 3258 3628 4112 * 28 28 6571 6900 2585 263 468 1852 7617 1000 2597 A 29 4273 6570 5915 5609 2224 6198 3300 3192 6393 3393 4830 * 5891 * 4741 4009 5475 3444 5783 3818 29 60 5965 5354 1585 585 898 1110 7547 1000 1714 D 30 5126 6574 2625 1308 * * 6198 * 4818 5914 * 4558 4324 6462 4894 3691 3267 6579 * * 30 62 6404 5062 1585 585 642 1476 7517 1000 2241 A 31 5905 6424 * * 4579 * * 2150 2499 2416 5590 * * 6655 3477 6552 6162 2493 * 5849 31 0 * * * * 1821 480 7468 0 2747 R 32 5078 * 3883 2589 * 4950 * * 2878 * 5989 4871 * 4107 1893 3520 3579 5645 * * 32 39 6779 5844 0 * 0 * 7489 1000 2257 F 33 5309 6081 * * 3033 * * 2371 * 2896 4757 * * * * * * 1231 * 4405 33 13 6785 * 0 * 955 1047 7492 1000 1604 S 34 3649 * 2122 5056 * 3890 * * 5277 4886 6498 3817 2424 4903 5136 2445 5668 * * * 34 0 * * * * * 0 7398 0 1000 P 35 3147 6658 4252 3891 * 4971 * 6057 3059 2447 * 5112 2572 4888 3727 3963 * 5267 * 6572 35 0 * * * * 0 * 7416 0 1000 Q 36 4456 * 2600 4142 5678 4390 5435 * 4806 * 4888 2583 * 4343 6608 2318 3240 6513 * 5095 36 0 * * * * * * 7413 0 0 M 37 3409 7261 2800 4036 6624 6477 6887 3143 6296 3367 2992 6885 * 3467 * 3743 3301 * 4593 * 37 0 * * * * * * 7422 0 0 S 38 * * 4797 6713 * * * * 5175 5599 * 6141 3769 5759 4912 2392 795 * * * 38 0 * * * * * * 7401 0 0 V 39 * * * * 6648 6111 * 1616 6460 3084 6436 * * * * * 6541 1007 * * 39 0 * * * * * * 7401 0 0 E 40 2864 5737 4324 2981 * 3333 6199 5341 3837 4019 6275 5321 * 3458 4096 2655 5912 5291 * 6671 40 0 * * * * * * 7401 0 0 A 41 4110 5718 2440 2313 * 6609 5745 * 4274 * * 4111 * 2577 5707 3015 4590 4749 * 6658 41 0 * * * * * * 7401 0 0 V 42 * * * * 4073 * * 3400 * 725 5495 * * * * * 6353 2463 5310 * 42 0 * * * * * * 7401 0 0 K 43 * * * 5945 * * * 6239 263 6199 5611 * * 4575 4305 * 6527 * * * 43 0 * * * * * * 7401 0 0 E 44 3292 * 3622 2374 * 4811 6658 6694 3893 3526 5720 4740 * 2952 4590 4737 3688 4377 * 5374 44 0 * * * * * * 7401 0 0 K 45 6910 * 6168 4231 * 7162 5512 4615 1445 2787 4067 5747 * 3627 3515 5632 6942 4044 * 7132 45 30 6088 7419 2000 415 * * 7401 1000 0 L 46 5014 3749 * * 4985 6312 * 1610 * 1419 6098 * * * * * * 2894 * * 46 12 6929 * 1000 1000 * 0 7435 1000 1000 W 47 2670 6152 * 1917 5502 6305 4328 * 6610 6130 4593 6133 * 3453 5251 3289 * 4402 5343 3218 47 0 * * * * * 0 7435 0 1000 K 48 3937 * 4274 3310 6706 4719 6863 4123 2639 4517 * 5093 5221 3262 3178 3646 3667 4836 * * 48 15 * 6572 * * 0 * 7435 0 1000 K 49 4658 * 4713 3120 5566 * 4094 3423 2963 3023 4109 6901 * 4295 3474 6398 * 2932 * 4923 49 0 * * * * 0 * 7383 0 1000 C 50 * 4590 6131 3586 3631 5420 6404 4797 5105 3494 5976 5584 * 4909 7056 3872 1855 3472 * 3662 50 0 * * * * * * 7395 0 0 G 51 * * 3531 5117 * 1014 5030 6251 3832 * * 3315 4947 5506 4248 4150 6403 * * * 51 0 * * * * * * 7399 0 0 T 52 * 5589 * * 5362 4192 * 1492 * 3057 5094 * 5942 * 6389 5028 2975 2522 * 4833 52 0 * * * * * * 7399 0 0 S 53 4098 6938 4115 4559 5460 * 6364 6735 4730 5825 6735 5946 1131 4277 * 2715 4977 * * 5974 53 0 * * * * * * 7399 0 0 V 54 2455 5517 6598 5193 6537 4590 6614 4190 7059 5035 6817 5445 1872 6884 6107 3841 4728 2768 * 5614 54 0 * * * * * * 7399 0 0 N 55 3929 6201 2638 2495 * 3531 6958 * 3415 * * 3281 6140 4326 5518 2487 5194 * * * 55 7 * 7725 * * * * 7399 0 0 S 56 6297 6219 4181 3870 5867 6381 3984 5988 3004 4959 6750 3589 * 2811 2480 3422 4468 5354 * 6879 56 0 * * * * * 0 7433 0 1000 M 57 * * * * 5466 * * 3699 * 3803 2108 * 5982 852 * * * 5214 * * 57 0 * * * * * 0 7433 0 1000 A 58 5566 * 6660 4960 6471 6652 5936 3745 2146 6052 6613 5793 * 3778 1417 7124 5771 4244 5061 * 58 0 * * * * * 0 7433 0 1000 L 59 * 6154 * * 5951 * * 3088 6281 424 5238 * * * * * 6211 4724 5945 * 59 27 * 5731 * * * 0 7415 0 1000 E 60 * 6094 6269 3761 2829 * 5605 2398 6563 2898 5810 5385 * 4168 5391 4442 4737 3522 5348 3529 60 29 * 5627 * * 632 1496 7847 0 2194 L 61 4843 4026 * * 1998 * 4071 4377 * 2297 * * * * * * * 3731 6603 1961 61 185 * 3051 * * 1320 738 7826 0 2143 Y 62 4399 * 6642 5147 4712 4464 6113 5125 2797 4283 * 3665 * 4722 2472 4492 5943 4386 * 2418 62 316 * 2345 * * * 0 7775 0 4426 D 63 5539 * 1690 6432 5752 2569 4493 5734 4889 6305 * 3010 5806 * 6050 2704 5689 5039 * * 63 50 5539 6311 3322 152 3413 142 7545 1000 4886 D 64 4005 * 4728 3545 * 2796 4611 * 2684 5746 * 4596 4888 4631 3641 3330 3020 4764 * * 64 153 * 3313 * * * 0 7563 0 4915 S 65 * * 2486 2823 * 3476 5809 * 4275 4689 * 3218 2990 3976 4054 4814 * 5566 * 3871 65 345 4810 2496 3746 112 3774 110 7338 1808 5188 G 66 3743 * 2797 4619 * 2212 3903 * 4280 5421 5652 3261 5412 4405 * 3484 3986 * * 4800 66 0 * * * * 4050 90 6989 0 5690 S 67 * 3921 3557 3531 * 3980 5439 * 3464 4996 * 3596 2307 4988 3198 3992 5485 4517 * * 67 100 4376 5715 1761 504 3862 103 6986 1685 5756 K 68 * * 4578 3719 3220 5634 5986 4774 2448 3187 5481 3894 3935 * 5488 5406 3335 3193 * * 68 70 4410 * 1001 999 1420 675 7146 1704 5620 V 69 3901 4727 5790 3871 6324 3965 6112 2700 6450 4194 6433 6235 4246 4208 5933 3346 4469 2545 * 4829 69 64 * 4533 * * 1295 755 7553 0 5478 A 70 3868 4872 5138 3802 4596 1406 * 4930 * 6033 6301 5173 4953 5366 4944 3226 5148 3919 * * 70 90 4785 5368 1180 840 1583 586 7655 1673 4867 V 71 4715 * 5107 3463 6060 5929 * 3776 2824 3845 5387 5108 3650 3763 2841 4225 5007 5191 5270 4532 71 19 6220 * 1000 1000 317 2344 7681 1000 4699 L 72 5219 5371 5802 3075 4333 5387 5775 3879 * 1302 4063 5132 5586 5376 5502 5151 7209 4136 * * 72 0 * * * * 648 1466 7826 0 2140 S 73 5180 * 2694 4854 5454 4243 * 6775 6481 1863 3427 4789 5112 7163 4106 3477 4267 5166 * 5659 73 35 * 5377 * * * 0 7831 0 1000 D 74 4976 6881 1725 3090 6260 5526 * * 2751 * * 2879 5982 4293 5039 4149 6844 4771 * 5531 74 39 5224 * 2162 365 1632 562 7798 1566 2320 D 75 4994 * 1114 3048 * 4491 * * 5981 * * 2991 3531 5830 * 3927 5926 * * 6224 75 19 6224 * 0 * 0 * 7830 1000 1778 S 76 3863 * 2385 2710 5731 4523 4547 * 5294 5168 5957 3479 * 5242 4315 2705 3925 5212 * * 76 17 6414 * 0 * * * 7869 1000 0 R 77 3065 * 4849 3846 * 6032 4693 6230 2253 5018 5431 4171 * 3500 2883 3601 4372 6509 6375 6388 77 16 * 6513 * * * * 7869 0 0 P 78 6270 5365 5177 * 6476 * 6077 5978 4146 3512 4509 5222 3928 4932 5628 2501 1431 * * 6347 78 16 * 6540 * * 0 * 7858 0 1000 L 79 * * * * * * * 3174 * 305 5614 * * * * * * 4074 * * 79 0 * * * * 0 * 7859 0 1000 G 80 3049 6925 4698 2892 * 2324 5243 * 4524 * * 4538 * 4245 3846 2921 5259 4573 * 3997 80 0 * * * * * * 7869 0 0 F 81 3175 6712 1853 3436 2802 * 6473 * 6274 * 6350 5548 * 4659 * 2723 4444 * * 3788 81 0 * * * * * * 7869 0 0 F 82 3906 4256 * * 3294 * 5630 6350 * 3220 5817 6473 * 5527 * 6532 * 6245 5161 898 82 0 * * * * * * 7869 0 0 S 83 5310 * 5000 6592 * 1017 6249 6273 3276 * * 2399 4766 4679 7099 4750 * * * * 83 13 6851 * 0 * * * 7869 1000 0 P 84 4429 4750 * * * * * 1527 6273 3160 4715 6350 5371 * * * * 1434 * * 84 34 5406 * 0 * * * 7869 1666 0 F 85 4440 6582 4798 2720 6475 5619 4741 5291 3032 5991 5317 5318 5959 2496 3724 3673 3984 4344 * 6228 85 0 * * * * * * 7668 0 0 D 86 5571 * 1219 3736 * * 5220 * 4872 * * 2229 3023 * * 4268 5313 * * * 86 0 * * * * * * 7664 0 0 G 87 * * 6861 5920 5881 513 5886 * * 4580 * 3276 * 5603 5068 5547 * * * 5406 87 0 * * * * * * 7641 0 0 F 88 3399 4431 2707 * 6145 4534 4651 6694 6298 4929 3454 4241 * 5318 * 2160 3793 5400 * 3952 88 0 * * * * * * 7554 0 0 R 89 5314 * * 2867 6588 * 5353 3743 3589 6281 * 5712 * 5108 2499 4606 1822 3583 * * 89 0 * * * * * * 7543 0 0 L 90 * * * * 5935 * * 1188 * 1705 6079 * * * * * * 2163 * * 90 34 * 5416 * * * * 7543 0 0 H 91 * 5907 5492 4863 5593 * 1055 6181 4473 3704 5330 4393 * 4260 6181 * 5879 5092 * 3260 91 0 * * * * 0 * 7449 0 1092 I 92 6219 4781 * * 5486 * * 2698 * 1935 3220 * * * * * * 1304 * * 92 0 * * * * * * 7456 0 0 I 93 5574 * 4779 4282 * * 4394 2444 3436 4062 5950 4600 * 4205 * * 5699 1408 * * 93 0 * * * * * * 7152 0 0 D 94 3663 * 720 3793 * 5235 * 5136 * 5468 * 4623 * 5306 4590 5106 * 5171 * * 94 0 * * * * * * 6672 0 0 L 95 * * * * * * * 5013 2410 2660 * 2737 * 4503 4096 4016 2143 3610 * * 95 0 * * * * * * 6442 0 0 D 96 * * 2327 4435 4286 4688 * * 4831 4963 4958 1958 * 5155 2264 4918 4704 * * * 96 0 * * * * * * 6415 0 0 P 97 * * * * * * * * * * * * 0 * * * * * * * 97 0 * * 0 * * * 5598 0 0 //