HHsearch 1.5 NAME c1xsfA_ FAM FILE c1xsfA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1xsfA_.a3m DATE Tue Mar 9 02:07:34 2010 LENG 108 match states, 108 columns in multiple alignment FILT 106 out of 174 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4451 0.2995 SEQ >ss_dssp CCSCCCCCCCCCCCCSSTTSCCCCCTTHHHHHHHHHHHTSSCTTCCCSSSBCTTTCCBHHHHHHTTGGGTCSSTTTSCHHHHHHHHHHHHHHHSSTTSCH HHHHHTCC >sa_dssp EEEEEDEEEDEEEDEEEECEECEECEBAEBADDAADDDBEDDBECDEEEDDBAABBBCCDCADEABADDBBDDACEBEDDBABBAABDACEEDCBEDBDE BADECDDE >ss_pred CEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHH HHHHHCCC >ss_conf 9263078002121245457777777773479999855637896510688621336416113332066544679222789999999999997469884600 36751689 >Consensus xvxxxxxvxxvvxxgtxxxxxxxxxxxxxxWdxiaxcESgGnxxxntgnGyyGxxQfsxxTWxaxGgxxyaxxxxxAsxxeQxxxAxxlxxxqGxgaWPx CxxxxGlr >c1xsfA_ NVVVTPAHEAVVRVGTKPGTEVPPVIDGSIWDAIAGCEAGGNWAINTGNGYYGGVQFDQGTWEANGGLRYAPRADLATREEQIAVAEVTRLRQGWGAWPV CAARAGAR >UniRef50_D1BCE4(366-499:499) Uncharacterized conserved protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCE4_SANKS E=2e-27 s/c=0.92 id=38% cov=96% --LTTAPVTEVLVQGTKERPkvvappvvrSAPAAPSapvdggsgepapeaapapavgGDVWAALAQCESSGNPSVVSSNGlYHGLYQFSVGTWQSLGGVG L---PSQASAEEQTRLAQALQARSGWGQWPHCSSKLGLR >UniRef50_C8X6T8(283-393:399) Transglycosylase domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X6T8_NAKMY E=3e-17 s/c=0.81 id=36% cov=87% --TVLEATPNQVHVGTKstldwqgSRVFFHDTEFGVNWDGLAYCESTNNPhAVNNPAGYlstYGLFQFDLPTWASVGGSG---NPGDASPEEQLTRAKLL YQSRGLEPW---------- >UniRef50_B2GL62(5-104:228) Resuscitation-promoting factor n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GL62_KOCRD E=4e-09 s/c=0.63 id=31% cov=86% ------GTAAVMMGGLAVGAFAVPANAAPSLDAIKQCESGGNYQAhNASSGASGAYQFLTSTWQGMGAiTAGYANAADAPAAVQDAAAAALMERSGPSQW ---------- >UniRef50_C5WJR9(118-202:204) Transglycosylase SLT domain family protein n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis GGS_124 RepID=C5WJR9_STRDG E=4e-07 s/c=0.66 id=23% cov=80% -VLSNGNTAGVVGSQAAAQMAAATGVPQSTWEHIIARESNGNPSAANASGASGLFQ-TMPGWGS-----------TVTVQDQVNSALNAYRAQGLSAW-- -------- >UniRef50_UPI00016B20E9(279-384:390) transglycosylase-like protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B20E9 E=3e-20 s/c=0.94 id=27% cov=97% SVMIEEPVEQVEVIGAKFKYSGGKLSEEQI-NALGRCESGMTATRNSGNGFYGAFQFSPSTWRSSAPAEYRGvLPHQAPIEAQMQAVQTLLSRSSiYTQF PGCANKM--- >UniRef50_Q2TLT9(1470-1562:1801) Putative uncharacterized protein ttm n=1 Tax=Gordonia terrae phage GTE5 RepID=Q2TLT9_9CAUD E=2e-17 s/c=0.96 id=33% cov=77% ----------------KRNPDGTYTSTDPEWAKLIQRESGGDPTVtqkvtdvnSGGNEASGLFQIAKGTWASNGGTKYAPTAGQATPEQQAEIAAKIFND QGGSPW---------- >UniRef50_UPI0001B57154(60-131:351) putative secreted transglycosylase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57154 E=3e-07 s/c=0.78 id=27% cov=47% ----------------ASAATTCPDITAPILAAQIETESNWNPNAHNASGADGLTQFTPATWAAWG---------------------------------- -------- >UniRef50_Q03U27(16-103:116) Aggregation promoting factrelated surface protein n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03U27_LACBA E=0.0001 s/c=0.55 id=28% cov=75% -----PSVTSVVTPATTAKASVTYVCNLSKKEKrakawIARKESGGNYRARNGR-YYGKYQLTI----SMLHGDY-------SKANQEKTADR-YAHSRY GTW---------- >UniRef50_A1HR61(260-316:1814) Lytic transglycosylase, catalytic n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR61_9FIRM E=8e-09 s/c=1.08 id=28% cov=53% --------------------------------AIAEQESGGDYGAVNPdSGARGKFQIMPENWPEWAEEFGLGRDAPMTPENQEYVATR----------- --------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * 2834 * * * * 2906 * * 1947 * 4041 * 1676 3423 * * * 1 0 * * * * * * 2959 0 0 V 2 * * * * * * * 3798 * * * * * * * * 3300 275 * * 2 0 * * * * * * 3278 0 0 V 3 3769 * * 5206 4349 * * 3510 * 2433 3493 * * * * * 3293 1371 * * 3 0 * * * * * * 3629 0 0 V 4 5303 * 5419 * * * * 2751 4893 2509 * * * * 4953 3079 1787 2709 * * 4 0 * * * * * * 3589 0 0 T 5 4560 * * 2561 * * 4753 5010 4144 4693 * 4013 * 4419 2990 3521 2314 3291 * * 5 0 * * * * * * 3616 0 0 P 6 1994 * * 2210 * 3146 * 4856 5310 * * * 2160 3695 * * 4075 * * * 6 0 * * * * * * 3804 0 0 A 7 1777 * * * 5556 3988 * * * 5557 * 4305 1102 * * 4372 * 4723 * * 7 0 * * * * * * 3857 0 0 H 8 5792 * 5863 5640 * * 5625 * 4962 * * 5705 * 4808 5213 * 1692 997 * * 8 0 * * * * * * 3933 0 0 E 9 3052 * 4286 2519 * 3473 * * * * * 4538 2393 4109 * 3874 2510 5125 * * 9 35 5367 * 0 * * * 3913 1000 0 A 10 1564 * * 2783 * 3697 * * 4387 * * 4151 * 3092 3664 3006 6093 * * * 10 0 * * * * * * 3929 0 0 V 11 4574 * * * * * * 3578 5031 3331 * * 5448 4991 * * 3116 799 * * 11 0 * * * * * * 3948 0 0 V 12 4558 * * 4203 * * * 3168 * 3812 4092 * * * * * 3871 855 * 4614 12 45 * 5025 * * * * 3952 0 0 R 13 2568 * * 4739 5518 2894 4995 4735 3003 3793 4807 5431 5446 6111 3438 5983 3665 3499 * * 13 0 * * * * 0 * 3923 0 1452 V 14 3404 * * * * 3503 * 2665 5947 4159 * 5558 4566 6115 4731 4035 4084 1506 * * 14 0 * * * * * * 3919 0 0 G 15 3695 * * * * 450 * * * * 5900 * 3408 4547 * 6014 5538 * * * 15 0 * * * * * * 3928 0 0 T 16 2473 * * 5923 4642 4023 * * * 2827 * * 5949 * * 4432 1042 6276 * * 16 41 5144 * 3280 157 * * 3944 1310 0 K 17 1936 * * 6559 * 3620 * 5851 1500 4123 * 5559 6057 3841 4754 * 3730 * * * 17 83 4955 5420 3087 181 * * 4067 1583 0 P 18 2400 * * 3606 4334 5929 * 6459 6134 5075 5436 * 1854 6046 5289 3431 3393 3665 * * 18 0 * * * * 0 * 4081 0 1339 G 19 2196 * * * 6841 2103 * 4732 3097 4344 * 4935 5281 4078 3096 4469 5184 5095 * * 19 35 6269 6517 3807 107 * * 4032 1000 0 T 20 1538 * 6039 * * 5020 * * * 6775 4339 * 1982 5712 * 3197 3440 4949 * 4458 20 87 4749 5533 3586 125 * 0 4055 1749 1000 E 21 1558 6277 5651 6404 4698 3962 * * 5866 6259 6290 * 3231 6352 * 3174 2789 3382 * * 21 14 6740 * 4087 87 1472 645 4054 1000 1541 V 22 1558 * 5129 * 5251 2436 * 5285 * 6583 * 5032 4836 5765 * 3992 2517 3987 * * 22 74 4769 6212 1238 796 * 0 4081 1824 1316 P 23 1952 5745 * 6673 * 3303 5932 * * 6689 * 6216 2572 6236 4541 2998 3187 3384 * 5867 23 15 6635 * 1585 585 1897 451 4093 1000 1721 P 24 2172 * 6258 6821 6755 4138 5544 6692 4432 * * 5993 2566 5225 5369 2546 2637 * * 4468 24 29 5634 * 2347 316 1614 571 4160 1492 1544 V 25 1484 * 4822 * * 2610 * 5356 5728 4681 * * 4472 7205 * 4004 4424 2405 * 6451 25 60 5667 5563 3382 146 * 0 4187 1456 1409 I 26 1442 5722 4970 5380 * 4108 6755 5122 * * * 4352 4067 5710 6248 2678 6997 2945 * 5257 26 25 6923 6845 3459 138 1896 451 4155 1000 1730 D 27 3683 * 1825 4114 6283 4995 * * * 6615 6676 3128 5230 5555 * 2328 2880 5599 * * 27 57 5728 5663 3336 150 374 2130 4090 1492 1892 G 28 1818 * 4339 3983 * 2100 5194 * 6631 5824 6802 4614 5433 4062 6657 3089 5254 5107 * * 28 16 * 6469 * * 1534 611 4109 0 1661 S 29 2892 * 3574 6865 7042 3280 5794 5512 * 3655 * * 4257 4665 5907 1630 3900 4903 6519 * 29 12 6973 * 1000 1000 1154 861 4123 1000 1620 I 30 3595 * 3125 4696 5975 7147 5624 3671 4782 * 4803 2685 5110 6162 * 5690 2393 2794 * 5814 30 58 * 4670 * * 0 * 4110 0 1414 W 31 * * 6742 * 5744 * * * 3814 3510 6246 * * * * * * * 322 * 31 0 * * * * 0 * 4048 0 1000 D 32 2246 * 1203 4028 * 5774 * * 5066 * * 3405 * 4470 5551 4249 * 6841 * 5426 32 0 * * * * * * 4189 0 0 A 33 1658 5570 * 6363 7273 3398 4456 6411 2572 5937 * * * 3542 2850 5849 5654 * 5008 6158 33 53 4804 * 1851 468 * * 4149 1607 0 I 34 * * * * * * * 1270 * 1732 * * * 6041 * * * 1893 * * 34 0 * * * * * * 4149 0 0 A 35 515 * * * * 4783 * 3004 5939 * 6000 * * * 4201 * * 4240 * * 35 0 * * * * * * 4149 0 0 G 36 3380 * 5118 2862 7009 5566 5366 * 4030 * 5530 5763 6137 1357 3516 * 4884 6154 6000 5184 36 0 * * * * * * 4149 0 0 C 37 5663 586 * * * * 4940 * 4896 6832 * * * 5384 2321 * 6041 * * * 37 0 * * * * * * 4149 0 0 E 38 * * * 0 * * * * * * * * * * * * * * * * 38 0 * * * * * * 4179 0 0 A 39 4555 * * * * * * * * * * * * * * 89 5861 * * * 39 0 * * * * * * 4179 0 0 G 40 * * 6350 5948 * 704 * * * * * 3042 * * 5283 2891 3719 * * * 40 0 * * * * * * 4179 0 0 G 41 * * 6665 * 5948 304 * * * * 4819 3824 * * * 7158 * * 4302 * 41 0 * * * * * * 4179 0 0 N 42 6886 * 2667 * 6443 6160 * * * 5812 5862 879 * 4977 3259 4270 4584 * * * 42 0 * * * * * * 4179 0 0 W 43 4038 * * * * * * 4524 * * * * 1825 * * 5697 * 5488 1362 2451 43 90 4044 * 0 * * * 4179 2161 0 A 44 2499 * 4259 * * 4548 3899 * 7393 * * 3067 * 4526 4343 1968 2654 * * 5127 44 31 5566 * 0 * * * 4157 1377 0 I 45 1441 * * * * * * 1608 * 6445 6850 * * * 4887 * 3628 2566 * * 45 161 3241 * 1396 690 * * 4157 2513 0 N 46 5078 * 3418 * 5570 6695 6055 6573 7277 * * 897 * 5873 5325 4913 4648 2625 * * 46 0 * * * * * * 4157 0 0 T 47 4815 * 4770 * * 4859 * * 5854 5859 * 2101 3857 * * 2851 1258 * * * 47 24 5949 * 1000 1000 * * 4157 1000 0 G 48 3702 * 6044 * * 665 * * * * * 5191 3276 * * 3293 4483 * * * 48 66 4481 * 0 * * * 4157 1744 0 N 49 5335 * 6573 * * 5589 * 4614 * * * 857 6445 4447 6171 2063 4624 * * * 49 107 * 3812 * * * * 4157 0 0 G 50 5102 * 5804 5230 * 176 * * * 6512 * * * * * 5037 * * * * 50 53 4794 * 0 * 0 * 4045 1635 2203 Y 51 1951 5127 * * 2817 * 4872 * 7089 7222 * * * 6556 6467 6510 5279 * * 1108 51 43 5103 * 2268 336 * * 4157 1538 0 Y 52 4334 * 6055 6167 4436 5313 4111 5484 * 5570 * * * 6864 4699 3714 * * * 677 52 26 5808 * 0 * * * 4157 1422 0 G 53 * * * * * 0 * * * * * * * * * * * * * * 53 0 * * * * * * 4157 0 0 G 54 2888 * * * * 1332 * 6273 3086 1859 4944 * * * 5115 * * * * * 54 0 * * * * * * 4157 0 0 V 55 * * * * 1820 * * * * 1331 * * * * * * 6055 5134 * 1858 55 22 6035 * 0 * * * 4157 1000 0 Q 56 * * * * * * * * * * * * * 22 6035 * * * * * 56 77 * 4262 * * * * 4157 0 0 F 57 * * * * 530 * * 3024 * 2597 5686 * * * * * * * * * 57 41 * 5158 * * 1516 621 4064 0 1414 D 58 3976 * 2794 * * * 6179 6185 4981 3306 5352 4338 * * * 1415 2718 5460 6917 * 58 62 * 4577 * * * 0 4070 0 1631 Q 59 4183 * 5406 5825 * * 5753 4576 5109 3077 5619 7121 2044 1944 4489 * 4135 4343 * 6042 59 29 * 5667 * * * 0 3965 0 2167 G 60 3480 * 5074 4025 * 3750 * 6880 4905 * * 4553 3720 2977 4971 1255 7237 * * * 60 35 * 5366 * * 2923 204 3935 0 2273 T 61 * * * 5166 * 5592 * * * 5782 * 3784 * * * 3647 357 * * * 61 26 * 5782 * * * 0 3898 0 2457 W 62 * * * * * * 4903 5648 * * * * * * * * * * 79 * 62 0 * * * * 1840 472 3878 0 2433 E 63 2640 * 3479 3256 * 4291 4603 7137 4371 4759 6442 3781 5230 3328 2690 4619 5484 4960 * * 63 34 * 5417 * * 2410 301 3948 0 2378 A 64 1256 * 6428 3967 * 3133 * 5668 5425 * * 4636 * * 6058 1768 * * * * 64 66 * 4494 * * 1427 671 3969 0 2576 N 65 4290 * * * 3668 7073 4305 * * 3397 4042 3396 * * * 4237 * 2096 4287 2163 65 0 * * * * 2296 328 4008 0 2406 G 66 3180 * * * * 339 * * 5327 4501 * * * * * 5046 * * * * 66 62 * 4579 * * 1144 869 3964 0 2323 G 67 5875 * * 5231 * 456 4414 * * * * 4980 3025 * * * * 5263 * * 67 72 5875 4969 0 * * 0 3997 1000 2593 L 68 2664 * 6100 4370 * 2788 * * 6185 2839 4900 6601 * 4118 4641 2901 2443 5527 * * 68 49 * 4900 * * * 0 3961 0 2802 R 69 3227 * 3289 2529 5209 1466 * * 4232 * * * * 3209 4623 5234 * * * * 69 242 * 2697 * * 1711 526 3967 0 2945 Y 70 5081 * * * 3202 4290 5853 * * 2557 6565 * * * * * * 5192 4701 870 70 282 * 2495 * * 3056 185 3740 0 3441 A 71 764 * * * * 4480 * * * 4820 * 5032 3007 5497 3583 4377 * * * 5496 71 12 * 6949 * * 4202 81 3715 0 3605 P 72 3064 * * 5135 * 1726 * * 5927 * 5072 5701 1666 * * 2960 6587 * * 5052 72 123 3619 * 0 * 1351 718 3783 1684 3527 R 73 6122 * 4869 5521 * 5256 5208 * * 3347 4328 2401 * 5748 1832 3527 2935 * * 5500 73 124 * 3597 * * 1024 976 3807 0 3299 A 74 1205 * 5070 * * * * 5179 * * * 4650 1180 * * * 5178 * * * 74 13 * 6753 * * 3623 122 3780 0 3128 D 75 2387 * 1604 * * 4137 2811 5654 5744 * * 4597 * 4798 * 2771 * * * 5777 75 0 * * * * 3643 120 3776 0 3067 L 76 4215 * 2685 4521 * 7222 * * 4118 2122 4644 4430 5116 2144 5683 4063 4953 * * * 76 0 * * * * 1452 656 3828 0 3039 A 77 248 * * * 5323 5351 6122 * * 5162 5179 * * * * 5873 * 5526 * * 77 0 * * * * 0 * 3897 0 2733 T 78 4662 * * * * * * * * * * * 2920 * * 924 1731 * * * 78 0 * * * * * * 4112 0 0 R 79 2970 * * 4437 * * * 4877 3021 6110 * * 1668 * 2184 * 6292 3224 * * 79 0 * * * * * * 4112 0 0 E 80 1553 * 6086 1562 * 6150 * * * * * 6638 * 2831 6998 3303 6862 * * 5416 80 0 * * * * * * 4112 0 0 E 81 4651 * 3992 1406 * * 5537 6030 * * 6887 3625 * 1781 * 6081 6013 4088 7073 7366 81 21 6081 * 0 * * * 4112 1000 0 Q 82 * * * * * * * * * * * * * 42 * * * * * 5116 82 0 * * * * * * 4112 0 0 I 83 4892 * 2787 3427 5924 * * 1303 * 4499 4036 * * 5479 6893 * 3365 4295 5457 * 83 0 * * * * * * 4112 0 0 A 84 1585 * 3522 3682 * * 4787 4766 4335 5318 5940 4174 * 3639 3490 6350 5538 * * 3654 84 0 * * * * * * 4112 0 0 V 85 2157 * * * * * * 3023 4617 7179 5625 5862 * * 2474 5797 5450 1528 * * 85 0 * * * * * * 4112 0 0 A 86 141 * * * * 4077 * * * * * * * * * * * 4877 * * 86 31 * 5537 * * * * 4112 0 0 E 87 4541 * 3213 1805 * * 6124 * 3787 3857 * 5618 * 2604 4743 6109 4502 3189 * 5901 87 0 * * * * 0 * 4119 0 1000 V 88 4812 * 6308 4737 * * * 4335 1815 4149 6041 3320 * 4760 2135 3677 4341 6799 * 6998 88 106 * 3818 * * * * 4112 0 0 T 89 5618 * * * * * * 3066 * 961 * * * * * * 4188 1924 5157 * 89 10 7181 * 2000 415 0 * 3914 1000 1567 R 90 5170 * * * 6409 * * 6124 * 1775 5068 * 6092 3563 4235 * 6773 6607 6012 1195 90 39 5223 * 0 * * * 4090 1795 0 L 91 1642 * 3804 4540 * 5751 5868 * 4332 6796 * 3128 * 3123 3388 3950 * 3619 * * 91 21 6124 * 2000 415 * * 4090 1000 0 R 92 2134 * 4154 7037 * 3033 6058 6962 4395 5505 5520 4860 * 3820 2587 3932 3186 6286 * 6386 92 10 7165 * 1585 585 * * 4090 1000 0 Q 93 4067 * * 5379 * 4794 * * 6492 * * 4872 * 1086 2944 2140 * 7114 * * 93 31 5556 * 0 * * * 4090 1552 0 G 94 * * 4630 * * 271 * * * * * * * * 3389 4829 * * * * 94 67 4456 * 591 1574 * * 4074 1461 0 W 95 2957 * * * 6900 4378 * 4575 7197 4044 4269 * 2599 6624 * 5071 4507 5889 2155 2615 95 28 5714 * 992 1008 * * 4074 1303 0 G 96 4188 * 7137 4448 * 957 * * 4940 * * * * 3793 6406 2345 3969 * * * 96 0 * * * * * * 4074 0 0 A 97 1009 * 6242 * * 5473 5993 * * * * * 2692 2239 * 4121 6012 6387 * * 97 0 * * * * * * 4074 0 0 W 98 * * * * 4824 * * * * * * * * * * * * * 52 * 98 117 * 3678 * * * * 4103 0 0 P 99 5858 * * * * * * * * * * * 57 * * 5549 * * * * 99 0 * * * * 0 * 3345 0 2083 V 100 2741 * * 6216 * 2871 3560 * 5277 5173 6056 4565 * * * 2779 3791 1803 * * 100 0 * * * * * * 3400 0 0 C 101 * 36 * * * * * * * * * * * * * * 5342 * * * 101 0 * * * * * * 3400 0 0 A 102 1917 * * * * 1268 * * * * * 6313 * * * 1925 4508 * * * 102 0 * * * * * * 3400 0 0 A 103 3500 * * 6038 * 4055 * * 2357 4441 * 4171 4639 4496 2372 2722 6449 3774 * 5283 103 0 * * * * * * 3420 0 0 R 104 3716 * * * 5671 5737 * 5102 1540 4268 4802 6079 4948 6035 2174 4758 * * * 3269 104 0 * * * * * * 3411 0 0 A 105 1868 * * * * 6286 * 5987 * 958 3696 5571 * * * 5035 * 5867 * 4768 105 0 * * * * * * 3398 0 0 G 106 * * * * * 0 * * * * * * * * * * * * * * 106 0 * * * * * * 2969 0 0 A 107 5123 * * * * * * 5568 * 179 5191 * * * * * * 4665 * * 107 0 * * * * * * 2963 0 0 R 108 * * * * * * * * * * * * * * 0 * * * * * 108 0 * * 0 * * * 2204 0 0 //