HHsearch 1.5
NAME  c1wm8A_
FAM   
FILE  c1wm8A_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c1wm8A_.a3m 
DATE  Wed Jan  9 20:18:58 2013
LENG  28 match states, 28 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.5118  3.5047 
SEQ
>ss_dssp
CCCSSTTGGGCSSSCCSCCCSSSCCCCC
>sa_dssp
EECEEDBEEBDEEEBDEEBDEDEBEDEE
>ss_pred
CCHHHCCCCCCCCCCCCCCCCCEECCCC
>ss_conf
9721267211488898872256031689
>Consensus
vgceecpmhckgknanptcddgvcncnv
>c1wm8A_
VGCEECPMHCKGKNANPTCDDGVCNCNV
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
V 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

G 2    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

C 3    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

E 4    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

E 5    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

C 6    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

P 7    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

M 8    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

H 9    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

C 10   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

K 11   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

G 12   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

K 13   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

N 14   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

A 15   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

N 16   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

P 17   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

T 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

C 19   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

D 20   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

D 21   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

G 22   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

V 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

C 24   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

N 25   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

C 26   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

N 27   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

V 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	28
       0	*	*	0	*	*	*	1000	0	0	

//