HHsearch 1.5 NAME c1wcnA_ FAM FILE c1wcnA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1wcnA_.a3m DATE Tue Mar 9 22:03:13 2010 LENG 70 match states, 70 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4472 1.3948 SEQ >ss_dssp CTTCCCHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHHTTCTTC >sa_dssp DEEEBCEDACEBECBEEEBACDAADEDACDAECAAECCDEDADEBEEBEEECABDBADCACDECEECEEE >ss_pred CCCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC >ss_conf 9878789972120637999999998488468889874299989771479899999999975125643359 >Consensus gxxxpxedLlxlxgxdxdlaxxLaxxxIxTxeDLAElsvdeLxxIxxxxxExAxxLImaARxxxWFxdex >c1wcnA_ GDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA >UniRef50_Q83BS0(432-498:503) Transcription elongation protein nusA n=504 Tax=root RepID=NUSA_COXBU E=1e-14 s/c=1.21 id=47% cov=97% -EKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIEIDDEAAANLIMAARA-HWFAEE- >UniRef50_Q3J9B5(432-496:506) NusA antitermination factor n=3 Tax=Gammaproteobacteria RepID=Q3J9B5_NITOC E=1e-12 s/c=1.14 id=50% cov=91% -----DQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIEGMNREKAARLIMAARE-SWFVSE- >UniRef50_C4GHM6(432-497:500) Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHM6_9NEIS E=2e-12 s/c=1.11 id=40% cov=96% --NEIDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEITGVSHEEAEKAILAARA-HWFAEE- >UniRef50_A5EWZ0(427-494:495) Transcription termination factor n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWZ0_DICNV E=4e-05 s/c=0.72 id=43% cov=93% -EDTPEEEMQTsvsvMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNTTQNEAAALILKARE-PWF---- >UniRef50_A0Q8F4(424-488:489) Transcription elongation factor n=17 Tax=Francisella RepID=A0Q8F4_FRATN E=5e-15 s/c=1.26 id=48% cov=94% GGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDIVDMDEEQATNLIMQARA-PWF---- >UniRef50_D1KAN2(323-390:390) Transcription elongation factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KAN2_9GAMM E=5e-13 s/c=1.11 id=43% cov=96% GDAESSEVLMGVEGMDEDLVQALIEAEIATVDDLAELSIDELLDIQEMDKEKASSMIMTAReNEGWF---- >UniRef50_A0LE21(435-502:506) NusA antitermination factor n=14 Tax=Bacteria RepID=A0LE21_MAGSM E=5e-10 s/c=0.96 id=38% cov=93% -----DERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFdgELTTEDAETLILGArRAAGWFDDE- >UniRef50_D0KHM4(339-509:509) NusA antitermination factor n=18 Tax=Proteobacteria RepID=D0KHM4_PECWW E=9e-74 s/c=0.68 id=75% cov=101% GDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLTDIEELNDEQAGELIMAARNICWFGDDN >UniRef50_Q1LSK7(334-494:495) Transcription termination factor NusA n=7 Tax=Gammaproteobacteria RepID=Q1LSK7_BAUCH E=2e-64 s/c=0.70 id=67% cov=100% LAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIEGLSSEQAGELIMAARKICWFGDQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 321 * * * 2327 * * * * * * * * * * 1 0 * * * * * * 1929 0 0 D 2 2788 * 1308 1665 * 2879 * * * * * * * * * * * * * * 2 0 * * * * * * 2304 0 0 N 3 2731 * 2726 * * 3270 * * 1483 * * 2077 * * * * * * * * 3 0 * * * * * * 2421 0 0 K 4 * * * 1781 * * * * 1138 * * * * 3270 * * 2726 * * * 4 0 * * * * * * 2421 0 0 P 5 * * * * * * * 2834 * * * * 496 * * 2731 * * * * 5 0 * * * * * * 2421 0 0 A 6 1573 * 1221 3061 * * * * * * * * * * * 3121 * * * * 6 0 * * * * * * 2652 0 0 D 7 * * 3731 641 * * * * * * * * * 1819 * * * * * * 7 0 * * * * * * 2652 0 0 D 8 * * 893 2202 * * * * * * * * * * 2950 * * 3121 * * 8 0 * * * * * * 2652 0 0 L 9 * * * * * * * * * 184 3061 * * * * * * * * * 9 0 * * * * * * 2652 0 0 L 10 2950 * * * * * * * * 919 3121 * * 3061 3226 * * * * * 10 0 * * * * * * 2652 0 0 N 11 * * 2410 3391 * 3121 * * * * * 3731 * 2950 * 3724 1638 * * * 11 184 3061 * 2000 415 * * 2652 1000 0 L 12 * * * * * * * * * 793 1699 * * * * * * 3121 * * 12 0 * * * * * * 2652 0 0 E 13 * * 3226 1295 * 2950 * * * * * * 2555 3464 * 3391 * * * * 13 0 * * * * * * 2652 0 0 G 14 * * * 3359 * 561 * * 3391 2950 * * * * * * * * * * 14 0 * * * * * * 2652 0 0 V 15 * * * * * * * 3359 * 1735 1737 * * * * * * 1727 * * 15 0 * * * * * * 2652 0 0 D 16 * * 959 3391 * * * * * * * * * * * 2588 2159 * * * 16 0 * * * * * * 2652 0 0 R 17 * * 2950 2172 * * 3359 * * 3464 * * * * 2021 3061 3403 * * * 17 0 * * * * * * 2652 0 0 D 18 * * 951 2555 * 3359 3391 * * * * * * * * * * 3061 * * 18 0 * * * * * * 2652 0 0 L 19 2950 * * * * * * 3391 * 581 3226 * * * * * * * * * 19 0 * * * * * * 2652 0 0 A 20 624 * * * * * * * * 2081 * * * * * * * 3121 * * 20 0 * * * * * * 2652 0 0 F 21 3061 * * 3464 2021 * * 2950 * * * * * 3121 2312 3359 * * * * 21 0 * * * * * * 2652 0 0 K 22 1549 * 3226 * * * * * 1450 * * * * 2433 * * * * * * 22 0 * * * * * * 2652 0 0 L 23 * * * * * * * * * 0 * * * * * * * * * * 23 0 * * * * * * 2652 0 0 A 24 576 * * * * * * 3121 * * * * * 3061 * * * 3403 * * 24 0 * * * * * * 2652 0 0 A 25 1450 * * 1166 * * * * * * * * * 3464 * 3359 * * * * 25 0 * * * * * * 2652 0 0 R 26 1549 * * * * * * 3724 2140 * * 2433 * * 2551 * * * * * 26 0 * * * * * * 2652 0 0 G 27 * * * 2255 * 1109 * * * * * 1613 * * * * * * * * 27 0 * * * * * * 2652 0 0 V 28 * * * * * * * 678 * * * * * * * * * 1415 * * 28 0 * * * * * * 2652 0 0 C 29 3121 2021 * * * * 3061 * * 3403 * 2950 * * * * 3226 2410 * * 29 0 * * * * * * 2652 0 0 T 30 * * * * * * * * * * * * * * * 3226 163 * * * 30 0 * * * * * * 2652 0 0 L 31 * * * * * * * * 3359 1412 3464 * * 3061 2312 * * 3121 * * 31 0 * * * * * * 2652 0 0 E 32 * * 1166 851 * * * * * * * * * * * * * * * * 32 0 * * * * * * 2652 0 0 D 33 * * 309 * * * * * * * * 2375 * * * * * * * * 33 0 * * * * * * 2652 0 0 L 34 * * * * * * * * * 0 * * * * * * * * * * 34 0 * * * * * * 2652 0 0 A 35 0 * * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 2652 0 0 E 36 * * 2950 200 * * * * * * * * * * * * * * * * 36 0 * * * * * * 2652 0 0 Q 37 * * * * * * * * 3403 832 * * * 1540 * * * * * * 37 0 * * * * * * 2652 0 0 G 38 2140 * * * * 2021 * * * * * * * * * 925 * * * * 38 0 * * * * * * 2652 0 0 I 39 * * * * * * * 1349 * * * * * * * * 2950 1064 * * 39 0 * * * * * * 2652 0 0 D 40 3226 * 559 3061 * * * * * 3403 * * * * * * * * * * 40 0 * * * * * * 2652 0 0 D 41 * * 1553 601 * * * * * * * * * * * * * * * * 41 0 * * * * * * 2652 0 0 L 42 * * * * * * * * * 0 * * * * * * * * * * 42 0 * * * * * * 2652 0 0 A 43 3731 * * * * * * 2141 3403 1733 3359 * * * * * 3724 2950 * * 43 0 * * * * * * 2652 0 0 D 44 * * 1488 1223 * * * * * * * 3391 * * * * 3061 * * * 44 0 * * * * * * 2652 0 0 I 45 * * * * * * * 200 * * 2950 * * * * * * * * * 45 0 * * * * * * 2652 0 0 E 46 * * * 1540 2950 3061 * 3403 * * * * * 3121 * * 3226 3464 * * 46 200 2950 * 1000 1000 * * 2652 1000 0 G 47 * * 3464 1270 * 1415 * * * * * 3061 * * * * * * * * 47 0 * * * * * * 2652 0 0 L 48 * * * * * * * 3403 * 1412 1722 * * * * * 3061 3226 * * 48 0 * * * * * * 2652 0 0 T 49 * * 1737 * * * * * * * * 2530 * * * 2306 1624 * * * 49 0 * * * * * * 2652 0 0 D 50 * * 2026 3464 * * 3226 * 3121 * * * * 3061 3359 3391 2950 * * * 50 0 * * * * * * 2652 0 0 E 51 * * * 184 * * * * * * * 3061 * * * * * * * * 51 0 * * * * * * 2652 0 0 K 52 3403 * 2950 2141 * * * * 1797 * * * * 1934 * * * * * * 52 0 * * * * * * 2652 0 0 A 53 0 * * * * * * * * * * * * * * * * * * * 53 0 * * * * * * 2652 0 0 G 54 1681 * * 2081 * 2021 * * * * * * * * * 3121 3464 * * * 54 0 * * * * * * 2652 0 0 A 55 2357 * * 2548 * * * * 3226 * * 2433 * * 3359 3121 2950 * * * 55 0 * * * * * * 2652 0 0 L 56 3226 * * * * * * * * 362 3121 * * * * * * * * * 56 0 * * * * * * 2652 0 0 I 57 * * * * * * * 0 * * * * * * * * * * * * 57 0 * * * * * * 2652 0 0 M 58 * * * * * * * * * 1490 635 * * * * * * * * * 58 0 * * * * * * 2652 0 0 A 59 875 * * * * 2950 * * 3061 * * * * 3464 * * 3121 * * * 59 0 * * * * * * 2652 0 0 A 60 0 * * * * * * * * * * * * * * * * * * * 60 200 2950 * 0 * * * 2652 1000 0 R 61 * * * * * * * * * * * * * * 0 * * * * * 61 176 3121 * 0 * * * 2652 1000 0 N 62 1247 * * 2202 * * * * 3391 * * 1911 * * * * * * * * 62 1027 * 973 * * * * 2652 0 0 I 63 2004 * * 2033 * * * 982 * * * * * * * * * * * * 63 0 * * * * 0 * 2041 0 2160 C 64 * 2021 * * * 2033 2312 * * * * * 2248 * * 3359 * * * * 64 0 * * * * * * 2652 0 0 W 65 * * * * * * * * * * * * * * * * * * 0 * 65 0 * * * * * * 2652 0 0 F 66 * * * * 0 * * * * * * * * * * * * * * * 66 0 * * * * * * 2652 0 0 G 67 1703 * 2488 * * 1487 * * * * * * * * * * * 2663 * * 67 0 * * * * * * 2311 0 0 D 68 * * 903 1703 * * * * * * * * * * * 2663 * * * * 68 0 * * * * * * 2311 0 0 E 69 * * 3128 408 * * * * * * * * * 2924 * * * * * * 69 0 * * * * * * 2311 0 0 A 70 1000 * * * * * * * * * * 1000 * * * * * * * * 70 0 * * 0 * * * 1183 0 0 //