HHsearch 1.5
NAME  c1w5iA_
FAM   
FILE  c1w5iA_
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1w5iA_.a3m 
DATE  Tue Mar  9 02:59:00 2010
LENG  32 match states, 32 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4929  3.5584 
SEQ
>ss_dssp
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
>sa_dssp
EEEDDDDDDEDEDDEEEDDEEDDDDDDEEEEE
>ss_pred
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>ss_conf
93378999999999863235789999997479
>Consensus
rmkqxedkxeexlskxyhxenexarxkklxge
>c1w5iA_
RMKQIEDKLEEILSKLYHIENELARIKKLLGE
>UniRef50_P03069(249-280:281) General control protein GCN4 n=5 Tax=Saccharomyces cerevisiae RepID=GCN4_YEAST  E=7e-06 s/c=1.61 id=73% cov=103%
RMKQLEDKVEELLSKNYHLENEVARLKKLVGE
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
R 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	1
       0	*	*	*	*	*	*	1189	0	0	

M 2    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1189	0	0	

K 3    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1189	0	0	

Q 4    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1189	0	0	

I 5    *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1189	0	0	

E 6    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1189	0	0	

D 7    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1189	0	0	

K 8    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1189	0	0	

L 9    *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	9
       0	*	*	*	*	*	*	1189	0	0	

E 10   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1189	0	0	

E 11   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1189	0	0	

I 12   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1189	0	0	

L 13   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1189	0	0	

S 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	14
       0	*	*	*	*	*	*	1189	0	0	

K 15   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1189	0	0	

L 16   *	*	*	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1189	0	0	

Y 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	17
       0	*	*	*	*	*	*	1189	0	0	

H 18   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1189	0	0	

I 19   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1189	0	0	

E 20   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1189	0	0	

N 21   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1189	0	0	

E 22   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1189	0	0	

L 23   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	23
       0	*	*	*	*	*	*	1189	0	0	

A 24   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1189	0	0	

R 25   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	25
       0	*	*	*	*	*	*	1189	0	0	

I 26   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1189	0	0	

K 27   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1189	0	0	

K 28   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1189	0	0	

L 29   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1189	0	0	

L 30   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	30
       0	*	*	*	*	*	*	1189	0	0	

G 31   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1189	0	0	

E 32   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	32
       0	*	*	0	*	*	*	1189	0	0	

//