HHsearch 1.5 NAME c1u9pA_ FAM FILE c1u9pA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1u9pA_.a3m DATE Tue Mar 9 09:31:41 2010 LENG 96 match states, 96 columns in multiple alignment FILT 55 out of 59 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4403 0.9447 SEQ >ss_dssp CCEEEEECTTTCCEEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC >sa_dssp ECECDAEACEECCDBDADBCEEBBECADEAAEEDEDDCCCAABCAACDBAEEDEDCEEEAEDABDCADEBAEEDEDDBCCBACDBACDCAEEDEDE >ss_pred CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 974314347898716787698999999999998199702999999999621622100000112799999999999999999999999999751279 >Consensus xxxxnxrxxxxxPqfxlRxPxeLrxxixxxAxxngRSmNaEIvxrLexsxxxexxxxxxxxxxxexxxklaeexxelxkkxifxtlkxxxxKxxxx >c1u9pA_ MPQFNLRWPGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI >UniRef50_A4TJE2(39-123:179) Phage regulatory protein n=10 Tax=Yersinia pestis RepID=A4TJE2_YERPP E=9e-17 s/c=1.03 id=31% cov=86% ------------PQLRIRLPVELKEKIEGSAKENNRSMNAEIVQRLDASYLSEFPEDGVLSAKDAL--QIANNAKESLSNLIFTRTFAEISKKVRI >UniRef50_D2TY02(9-76:79) Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae RepID=D2TY02_9ENTR E=2e-08 s/c=0.88 id=28% cov=72% --------------FGVRMTTELKDRLHEEARRNTRSLNSEIVKRLEDSLSKENQQLSENKDDFENRISMLEDMIEKLKKEI-------------- >UniRef50_C7BL11(26-110:111) Putative uncharacterized protein gene0114 n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BL11_PHOAA E=2e-07 s/c=0.67 id=36% cov=67% ------------PQINIRLPQDLKEAVQNMALDNKRSVNAEIVAILLDAVRKHALSNQgqsssgtrlkaidylYEREVLEEIAKLAAENA---------- ----------- >UniRef50_UPI0001B52C84(5-84:84) Mnt n=1 Tax=Escherichia sp. 4_1_40B RepID=UPI0001B52C84 E=3e-15 s/c=1.03 id=31% cov=81% ------------PHFNFRMPLEVREKLKLRAEANGRSMNSELLQIVQDALSKPSPITGYRDE----AERLADQQAEQFKAIVFETLKKIYEKD--- >UniRef50_A8HTS5(12-90:129) Putative uncharacterized protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8HTS5_AZOC5 E=2e-13 s/c=0.97 id=22% cov=80% ----------------IRVPDGLRDRIAVAAKANGRSVNSELVALLEEAYPAEPTVHEVIHLAGLLADDFLDAPEHLGLRQLRDTLKEVVEK---- >UniRef50_B4EV47(1-80:85) Phage regulatory protein n=2 Tax=Proteus mirabilis RepID=B4EV47_PROMH E=5e-12 s/c=0.91 id=21% cov=84% MSQKNTRIRDITP-YSLRMPDTLKEKLMQRASKNGRSLNAEMVMILQSAVDEDNTPKNLNELSQLDPEKFKELFMETIKKM--------------- >UniRef50_B0KJR5(5-70:135) Arc domain protein DNA binding domain protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KJR5_PSEPG E=9e-09 s/c=0.93 id=35% cov=69% ------------PQFNLRIPEYLRNLVMAAAQENKRSATAEILARLEASFSKTDSVRLNLGLPLVDAREETDQRSRT------------------- >UniRef50_C6B7L8(4-78:90) Arc domain protein DNA binding domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B7L8_RHILS E=5e-11 s/c=0.91 id=31% cov=61% ----------GDPHFRLRLPEDLKREIETAARANSRTITSEVVYRLEQSFARSSTYQGGLVEEIEAIR---------------------------- >UniRef50_B7I711(11-96:103) Arc domain protein DNA binding domain protein n=2 Tax=Acinetobacter baumannii RepID=B7I711_ACIB5 E=1e-13 s/c=0.90 id=31% cov=84% -------------QYNLRWSEELRDKIADEAKKNTRSMNQEIIARLEHSFRSESaskPFLSFDKDTSHLVIGDAEERKRLAQiaaKAVFDALGQSLDQD- -- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1714 0 0 P 2 * * * * * * * * * * * * 982 * * 1018 * * * * 2 0 * * * * * * 1714 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 1714 0 0 F 4 * * * * 982 * * * 1018 * * * * * * * * * * * 4 0 * * * * * * 1714 0 0 N 5 * * * * * * * * * * * 0 * * * * * * * * 5 0 * * * * * * 2168 0 0 L 6 * * * * * * * 1592 * 1634 * * * * * * 1531 * * * 6 0 * * * * * * 2168 0 0 R 7 * * * * * * * * * * * * * * 0 * * * * * 7 0 * * * * * * 2168 0 0 W 8 * * * 1592 * * * 1531 * * * * * * * * * * 1634 * 8 0 * * * * * * 2168 0 0 P 9 * * 1949 * * * * * * * * * 1053 * 1949 * * * * * 9 0 * * * * * * 2468 0 0 G 10 * * 949 * * 1990 * * 2120 * * * * * * * * * * * 10 0 * * * * * * 2468 0 0 G 11 * * * * * 1323 * 2237 2254 * * * * 2487 * * * * * * 11 0 * * * * * * 2719 0 0 G 12 * * 1562 2935 * 2731 * * * * * 2072 * * * * 2814 * * * 12 0 * * * * * * 2590 0 0 P 13 * * * 3488 * * * * * * * * 135 * * * * * * * 13 83 * 4156 * * * * 2935 0 0 Q 14 * * * * * * 3398 * 1855 * * * 5063 804 5270 * * * * * 14 0 * * * * 0 * 3411 0 1000 F 15 5485 * * * 679 * * 5147 * 4069 4668 * * * * * * 4640 * 2426 15 0 * * * * * * 3483 0 0 N 16 * * * * * 3951 5311 3588 2323 * 3707 1996 5131 4506 4118 5331 * 2787 * * 16 0 * * * * * * 3483 0 0 L 17 * * * * 3474 * * 2561 * 881 * * * * * * * 2339 * * 17 0 * * * * * * 3437 0 0 R 18 * * * * * * * * * 5164 * * * * 89 * * * 4973 * 18 0 * * * * * * 3464 0 0 W 19 * * * * 3234 * * 3138 * 1510 1946 * * * * * * 3665 3465 * 19 0 * * * * * * 3461 0 0 P 20 * * * * * * * * * * * * 155 * * 3674 5429 * * * 20 0 * * * * * * 3461 0 0 R 21 4099 * 2504 2282 * 5437 5767 5173 5788 5657 5558 * 2880 3415 4840 4634 4640 3780 * 6174 21 0 * * * * * * 3461 0 0 E 22 * * 2497 1105 * 1839 5611 * * * * * * * * 5850 5759 * * 5499 22 0 * * * * * * 3461 0 0 V 23 * * * * * * * 4833 * 559 2251 * * * * * * 3719 * * 23 0 * * * * * * 3461 0 0 L 24 * * * * * * 3924 * 1452 4840 * * * * 906 * * * * * 24 0 * * * * * * 3461 0 0 D 25 3718 * 1482 1834 * 5181 * * 5373 * * 3303 * 4179 3947 * 6325 * * * 25 0 * * * * * * 3461 0 0 L 26 2712 * * 4786 * * * 5788 1954 3482 * * * 2478 1910 * * * * * 26 0 * * * * * * 3461 0 0 V 27 * * * * * * * 1122 * 1748 * * * * * * * 2042 * * 27 0 * * * * * * 3461 0 0 R 28 2385 * * 2124 * 6330 4391 5942 1967 * 4623 6105 * 5544 3656 4378 4536 * * * 28 0 * * * * * * 3461 0 0 K 29 2846 * 4109 1649 5558 5121 5437 5461 3859 4416 * 4006 * 3062 5316 * 4842 5026 * * 29 0 * * * * * * 3461 0 0 V 30 1499 * 5611 3345 * * * 4798 5547 4095 5544 * * * 2426 3502 * 3665 * 4757 30 0 * * * * * * 3461 0 0 A 31 38 * * * * * * * * * * * * * * 5259 * * * * 31 0 * * * * * * 3461 0 0 E 32 4251 * 6250 2146 * * * * 1302 4211 * 3865 * 5499 4044 4190 4552 * * * 32 0 * * * * * * 3461 0 0 E 33 1638 * 3689 2654 * * 5547 * 3351 6519 5767 4397 * 4685 2789 4831 * 5190 * * 33 0 * * * * * * 3461 0 0 N 34 * * * 4157 * 5801 4596 * * 5720 * 510 * * 4333 3690 6196 * * 5461 34 0 * * * * * * 3461 0 0 G 35 * * * * * 994 2869 * 3281 * * 2702 * * * 4579 3999 * * * 35 0 * * * * * * 3461 0 0 R 36 * * * * * * * * * * * * * 5073 100 * 4757 * * * 36 0 * * * * * * 3461 0 0 S 37 * * * * * * * * * * * * * * * 74 4322 * * * 37 0 * * * * * * 3461 0 0 V 38 4107 * * * 5355 * * 2815 * 2698 1042 * * 5073 * * * 3240 * * 38 0 * * * * * * 3461 0 0 N 39 * * * * * * 5316 * * * * 182 * * * * 3419 * * * 39 0 * * * * * * 3461 0 0 S 40 941 * * * * 4122 * * * * * 5437 * 4395 * 1670 4757 * * * 40 0 * * * * * * 3461 0 0 E 41 * * 4100 87 * * * * * * * * * * * * * * * * 41 0 * * * * * * 3461 0 0 I 42 5744 * * * 5043 * * 527 * 4152 3766 * * * * * * 2976 * * 42 0 * * * * * * 3448 0 0 Y 43 * * * * * * * 2347 * 2910 * * * * * * 5325 714 * 4801 43 0 * * * * * * 3431 0 0 Q 44 1293 * 4701 * 5729 * 3236 * 4412 5287 3853 5325 * 2691 4738 5852 * * * 4264 44 0 * * * * * * 3431 0 0 R 45 4353 * * * * * * 2746 * 4065 5832 * * * 579 * 5819 4738 * * 45 0 * * * * * * 3431 0 0 V 46 * * * * * * * 2984 * 332 * * * * * * * 3660 * * 46 0 * * * * * * 3431 0 0 M 47 * * 4860 605 * * * * 5891 5473 4798 5860 * 2344 5748 * * * * * 47 0 * * * * * * 3439 0 0 E 48 2936 * 2150 2381 * 5543 4902 * 3958 * * 6174 * 3251 3164 4892 5118 5213 * 6278 48 0 * * * * * * 3439 0 0 S 49 2438 5820 * 4731 * * * * 5806 * * 6059 * * 5048 700 3619 * * * 49 0 * * * * * * 3439 0 0 F 50 * * * * 1194 * * 3877 * 1820 * 5401 * * * * * 3874 * 3061 50 99 4439 5617 0 * * * 3416 1000 0 K 51 2395 * 2798 3277 * * 5037 * 4442 3328 * 5903 3838 * 2662 3009 5789 * * * 51 0 * * * * * 0 3485 0 1000 K 52 3525 * 4753 2702 * 4260 5078 * 2009 4906 * 3690 5121 5430 3630 2750 * * * * 52 36 * 5350 * * 0 * 3476 0 1000 E 53 * * 3256 972 * * 4795 * 5117 * * * 2363 4854 * 4276 4643 * * * 53 49 4917 * 3807 107 * 0 3461 1000 1000 G 54 2896 * 4472 4610 5120 2745 * * 5121 * * 3405 5209 4893 * 1538 * 3764 * * 54 112 3738 * 2701 241 * 0 3522 1647 1000 R 55 * * 4502 2336 * * * * * 4443 * * 1728 3411 4139 3417 2594 * * * 55 0 * * * * * 0 3614 0 1000 I 56 4413 * * 3735 4541 * * 2459 * 3072 * * 4384 4427 * 3590 * 2097 * 3023 56 0 * * * * * 0 3711 0 1000 G 57 4104 4112 4707 * * 2849 4589 * 4319 2937 * 3491 * 3947 4201 3168 2596 * * * 57 67 4456 * 2000 415 * 0 3746 1000 1000 G 58 4426 * * 3097 * 1856 * * * 4077 * 4061 3947 4238 4003 2639 * 3317 * * 58 81 4187 * 3907 100 * 0 4167 1000 1000 G 59 3948 * * 4023 4118 2978 * * * 2471 * 3198 * * * * * 2158 * 2508 59 72 * 4368 * * * 0 4228 0 1000 G 60 3847 * 4023 4169 * 3970 * 4162 * 2426 * 2360 * * 2744 2611 * * * * 60 0 * * * * 1079 925 4192 0 1446 R 61 * * 2404 4181 3848 3989 3203 * 3037 * * 4699 * * 2462 3256 * 3867 * * 61 0 * * * * * 0 4223 0 1000 E 62 3256 * 2641 1636 * * * * * 2547 3940 * * 3885 4648 3848 * * * * 62 113 * 3729 * * * 0 4223 0 1000 V 63 4081 * 2822 3821 * * * 3045 4256 4051 * * 3901 * * 3285 3023 2305 * * 63 0 * * * * 1327 733 4194 0 1489 L 64 * * 3106 3835 3980 4131 * 3060 * 1661 4191 * 4572 4162 * 4105 4427 * * * 64 0 * * * * * 0 4244 0 1147 D 65 4329 * 2009 1441 * * 4105 4123 4572 3146 * * * * * * * 3988 * * 65 0 * * * * * 0 4244 0 1147 L 66 3005 * 2543 4187 3868 * * * 4191 1419 * 3980 * * * 4572 * 4427 * * 66 74 * 4329 * * 0 * 4244 0 1147 V 67 1686 * * * 4482 * * 2511 * 3920 3899 * 4208 * 4040 * * 2178 * * 67 0 * * * * * 0 4213 0 1000 R 68 2479 * 4188 1794 * * * 2531 * * * * * * 2075 * 3899 * * * 68 0 * * * * 0 * 4213 0 1000 K 69 4159 * 4145 2924 * 4157 * * 1263 * * * * 4241 3040 3204 * * * * 69 0 * * * * * * 4262 0 0 V 70 4113 * 4157 3888 2656 * * 4241 * 1472 3125 3835 * * * * * 4015 * * 70 103 3865 * 0 * * * 4262 1000 0 A 71 862 * * * * * * * 3952 2383 * * * 3788 * * 3807 4330 * * 71 0 * * * * * * 4185 0 0 E 72 4160 * 1589 1419 * * * * * * * 3086 * 4401 3788 * * * * * 72 0 * * * * * * 4185 0 0 E 73 3986 * 3865 1510 * * * * * 2867 * 4113 * 1923 * 4096 * * * * 73 0 * * * * * * 4185 0 0 N 74 4113 * * 4401 3952 * * 4096 * * 3865 2467 3986 1962 2304 * * * * * 74 0 * * * * * * 4185 0 0 G 75 2212 * * 3040 * 3945 * 3865 3058 * 3952 4330 * * * 1763 * * * * 75 0 * * * * * * 4185 0 0 R 76 * * 3221 874 * * 3937 * * * * * * * 2256 * * 3786 * * 76 0 * * * * * * 4121 0 0 S 77 * * * * * * * * 3044 1413 2418 * * 4568 * 2938 2801 * * * 77 0 * * * * * * 4121 0 0 V 78 3716 * * * 3192 3685 * 3587 3780 1740 3588 * * * * * * 2335 * * 78 0 * * * * * * 3888 0 0 N 79 * * 3780 * * * * * 704 3685 * 3545 * 3716 * 3760 * * * * 79 125 3590 * 1585 585 * * 3888 1000 0 S 80 4157 * * 3937 * * * * 910 * * 3649 * * 3482 3469 3526 * * * 80 0 * * * * * * 3796 0 0 E 81 2645 * * 2392 3644 * * 4048 * 2491 2104 * * 3342 * * * * * * 81 0 * * * * * * 3718 0 0 I 82 * * * * * * * 1560 * 1659 * * * * * * * 1539 * * 82 0 * * * * * * 3438 0 0 Y 83 * * * 3113 956 * * * * 3243 * * * * 2902 * * * * 2947 83 0 * * * * * * 3277 0 0 Q 84 * * 1582 1752 * * * * * * * * * 2028 * * 3013 * * * 84 0 * * * * * * 3277 0 0 R 85 2780 * * * * * * * * * * * * * 1775 * 831 * * * 85 0 * * * * * * 3153 0 0 V 86 * * * * * * * * * 499 * * * * * * 2796 2754 * * 86 0 * * * * * * 3153 0 0 M 87 * * * * 2796 2780 * * 831 * 2754 * * * * * * * * * 87 0 * * * * * * 3153 0 0 E 88 2796 * 3523 1756 * * * * 3456 * * * * 2780 * * 2081 * * * 88 0 * * * * * * 3153 0 0 S 89 * * * 2796 * * * 3456 * 3523 2081 * * * * 1767 * 2758 * * 89 0 * * * * * * 3153 0 0 F 90 * * * * 2754 * * 2796 * 2780 * * * * * * * 2758 * 1271 90 180 3091 * 1585 585 * * 3153 1000 0 K 91 3072 * 2780 2065 * * * * 1504 * * * * * * 2796 * * * * 91 0 * * * * * * 3153 0 0 K 92 * * * * * * * * 227 * * * * 2780 * * * * * * 92 0 * * * * * * 3153 0 0 E 93 * * 1045 1575 * * * * 2477 * * * * * * * * * * * 93 0 * * * * * * 2861 0 0 G 94 * * * * * 966 * * * * * * * * * * * 1035 * * 94 0 * * * * * * 1587 0 0 R 95 * * * * * * * * * * * * * * 0 * * * * * 95 0 * * * * * * 1587 0 0 I 96 * * * * * * * 0 * * * * * * * * * * * * 96 0 * * 0 * * * 1587 0 0 //