HHsearch 1.5 NAME c1s1iW_ FAM FILE c1s1iW_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1s1iW_.a3m DATE Wed Mar 10 11:23:16 2010 LENG 78 match states, 78 columns in multiple alignment FILT 61 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4771 2.0518 SEQ >ss_dssp CCCCEEECCTTTBTTBSCTTSCSHHHHHHHHHTTSSSSSCCSCCCCCSSTTTTTTSSCSSSCCSCEEECCCCCTTTTC >sa_dssp EEDEBDBDACDAAEDEDDDEEDBBDCADDBBCDDACEECEBEDCEBCEECDDCBCEDDDDCBDDEBDBDBDCDEEEDC >ss_pred CCEEEEEEEECHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC >ss_conf 925899998303630089801020799999999999972998178767999999861201898378999997303589 >Consensus xxvtrexTInlxkxxxxxxxkkRAxxAikxIrkfaxkxmktxdVxidxxlNxxiWsrGixxxPxrIrVrxxrkxxede >c1s1iW_ DVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEE >UniRef50_A8BMP3(3-77:106) Ribosomal protein L31B n=2 Tax=Giardia intestinalis RepID=A8BMP3_GIALA E=3e-05 s/c=0.66 id=34% cov=97% --IVYEHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEVRLEGDDE- >UniRef50_C4VAT9(10-84:111) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAT9_NOSCE E=1e-10 s/c=0.90 id=32% cov=96% ---TMELTVNLGKITKGCNWTKKASIAVKKFRKHLKKMLKTDEkITIQKDLNKFIFSKGLRKVPRRVRIKVERIPDKD- >UniRef50_Q18EU7(8-83:92) 50S ribosomal protein L31e n=12 Tax=Halobacteriaceae RepID=RL31_HALWD E=6e-13 s/c=0.99 id=34% cov=95% ----RVVTVPL-RDVSAVPTHERAGRAMTLIREHLAQHFRVDesDIRLDPSLNETVWARGSQNPPSKLRVRAARFDEDGE >UniRef50_D2I3G7(4-71:86) Putative uncharacterized protein (Fragment) n=1 Tax=Ailuropoda melanoleuca RepID=D2I3G7_AILME E=1e-09 s/c=0.94 id=32% cov=88% --------IHIHKHICGGSLKKSAPSG-REIQKTARKELGISDVCKDSRHNRAARAKAIRNGPHQISIQSSRKHKED- >UniRef50_Q74MC9(1-72:79) NEQ364 n=1 Tax=Nanoarchaeum equitans RepID=Q74MC9_NANEQ E=3e-10 s/c=0.92 id=33% cov=94% ----MEYTVNLRKAVLVTSRFKRTKKAVKALKEFVMRHTKAKIVKISQELNKFIWKRGGRKPPTKFTIVVTKEGDT-- >UniRef50_A3DNH4(7-81:102) 50S ribosomal protein L31e n=3 Tax=Desulfurococcales RepID=RL31_STAMF E=6e-07 s/c=0.74 id=25% cov=96% --ITRSIHVIPLKRVYWGRRTNRADRAVRLIRKYVRRHFKeAEKIIIDPAVNEYVWSRSREKPPRRVIVEIRFDKEE-- >UniRef50_Q9HM17(4-81:89) 50S ribosomal protein L31e n=2 Tax=Thermoplasma RepID=RL31_THEAC E=2e-06 s/c=0.68 id=25% cov=91% ETVAQEVIINVPlRDAKASSRKRRADTAVSILRNFVSKKMKIDkgKIWIDPKVSEKIWERGREHIPSKMSVKV-------- >UniRef50_A8MAL4(9-77:86) Ribosomal protein L31e n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MAL4_CALMQ E=5e-05 s/c=0.71 id=29% cov=87% -------TINL-RDVKEASRRIRAPYAARFIKRIIARYVKVDEdkVKLNENLNNLLWSRGIQKPPSRIKVKVTKRED--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1432 668 * * * * * * * * * * * * * * * * 1 0 * * * * * * 2780 0 0 V 2 3666 * * 3894 * * * * 3678 * 4881 * 3942 * * * 3214 813 * * 2 0 * * * * * * 3092 0 0 V 3 4664 * * * * * * 1880 * 2983 * * * * * * * 830 * * 3 0 * * * * * * 3586 0 0 T 4 3249 * * 2608 * * * * * * * * * * * 4664 681 3887 * * 4 0 * * * * * * 3777 0 0 R 5 * * * * * * * * 4573 4608 3233 * * 4466 661 * * 4372 4264 4930 5 0 * * * * * * 3923 0 0 E 6 * * * 830 5831 4882 * 4344 * * * 5594 * 4966 * 4768 3771 2523 * * 6 0 * * * * * * 4175 0 0 Y 7 4331 3723 * * 4081 * 5534 3480 * 5259 3309 * * * * 5340 4958 4117 6764 1140 7 0 * * * * * * 4350 0 0 T 8 * * * * * * 5186 4355 * * 4900 4332 * * * 3799 510 3911 * * 8 0 * * * * * * 4269 0 0 I 9 * * * * 3828 * * 690 * 5373 * * * * * 5382 * 1934 * * 9 0 * * * * * * 4407 0 0 N 10 * * * * * 5241 2867 5306 * * * 751 2704 * 3974 * * * * * 10 0 * * * * * * 4407 0 0 L 11 5010 * * * * * * 2318 * 704 3769 * 5306 * * * * 5085 * 5241 11 254 * 2629 * * * * 4407 0 0 H 12 4258 * * * * 2994 1490 * 4077 4692 * 5477 4722 3975 2397 4195 * * * * 12 56 4722 * 0 * 0 * 4385 1000 2570 K 13 5119 * * * * * 4521 5411 781 * * * * * 1635 * * * * * 13 19 * 6281 * * * * 4407 0 0 R 14 3054 4576 3757 4133 * 5057 3839 3910 4496 3277 * * * 6158 1745 * * 4266 * 5135 14 27 * 5772 * * 0 * 4431 0 1000 L 15 3631 4577 * * * * * 2461 5061 1930 4244 * * * * * 3944 1808 * * 15 0 * * * * 0 * 4399 0 1000 H 16 * 4461 * 5069 5398 * 1712 * 2114 3447 * * * * 3888 4283 * 5432 5771 3149 16 34 5411 * 0 * * * 4407 1000 0 G 17 4253 * 5114 4429 * 1445 * 6121 2698 * * 3632 * * 3298 4249 * 4580 4064 * 17 0 * * * * * * 4402 0 0 V 18 3981 3466 * 5123 * 3287 * 4424 3547 4727 5363 * 5820 5683 * 4782 4087 1782 * 3356 18 0 * * * * * * 4380 0 0 S 19 * 5405 4987 * * 2686 * * 3538 * * 5475 1725 * 4182 2189 3264 * * * 19 54 * 4759 * * * * 4405 0 0 F 20 5447 * * * 1518 * 5768 5461 5457 4511 * * 5229 * 1594 4356 5463 5930 4310 5378 20 0 * * * * 0 * 4380 0 1217 K 21 * * * 5502 5540 * 5517 * 1251 * * 3835 * 4071 3833 4598 3002 * 3031 5247 21 0 * * * * * * 4405 0 0 K 22 * * * 4067 5164 * 5640 4988 856 4881 6799 4767 * 5788 2248 * * * * * 22 10 * 7116 * * * * 4388 0 0 R 23 4533 * * * * * 5140 * 2683 * * * * * 502 3909 * * * * 23 14 * 6694 * * * 0 4405 0 1000 A 24 323 5378 * * * 4811 * * * * * * * * * 3735 5530 4504 * * 24 0 * * * * 678 1415 4444 0 1297 P 25 3982 * 4103 5150 * 5488 * 4895 2865 * * 3870 1164 * 6694 3314 * 4943 * * 25 0 * * * * * 0 4405 0 1000 R 26 5327 * * * * 6522 * 4019 2703 5404 * 6480 * 3606 1400 3302 4206 5838 5021 4344 26 0 * * * * * 0 4405 0 1000 A 27 272 * * * * 3362 * * * * * * * * * 5696 5106 5266 * * 27 67 * 4463 * * * 0 4405 0 1000 V 28 3827 5447 * * * * * 1276 * 3082 4795 * * * * * * 1558 * * 28 0 * * * * 750 1303 4284 0 1389 K 29 5957 * * * * 5791 * * 849 5619 * 4188 * 6517 1950 4526 5488 * * * 29 0 * * * * * 0 4405 0 1000 E 30 3296 * 4911 1500 4480 * * 3985 5364 3553 2860 5106 * * 5404 * * 4479 * 4089 30 0 * * * * 0 * 4405 0 1000 I 31 * * * * 5410 * * 530 * 2528 7116 * * * * * * 3274 * * 31 0 * * * * * * 4388 0 0 K 32 * * * * * * * * 1581 * * * * 3695 1052 * 5164 6380 3915 * 32 0 * * * * * * 4388 0 0 K 33 2972 * 4242 2371 5373 * * * 1256 * * 4442 * * 3530 4991 5671 * * * 33 0 * * * * * * 4388 0 0 F 34 4404 * * 5252 693 * 3918 4206 * 4574 * * * 6024 * * 4460 * 6241 3801 34 0 * * * * * * 4388 0 0 A 35 958 * * * * * * 3111 * 2761 * * * * * * * 2171 * * 35 0 * * * * * * 4341 0 0 K 36 2748 * * 4394 * 4468 * 3808 2871 * 2876 * * 2812 2833 3580 * 5245 5543 * 36 0 * * * * * * 4341 0 0 L 37 * * * 6145 * * 4737 * 763 6013 6084 * * 5506 1704 * * * * * 37 0 * * * * * * 4341 0 0 H 38 4173 * 5518 2682 * * 1313 6084 5520 3607 4269 5328 * 4511 * * 4784 4314 * 4690 38 0 * * * * * * 4341 0 0 M 39 3797 * * * 3537 5930 * * * 3139 807 * * * * * 3434 5730 5098 * 39 0 * * * * * * 4354 0 0 G 40 * * * * * 1874 4329 * 961 5355 * 4618 * * 3344 * * * * * 40 72 4356 * 677 1417 * * 4354 1703 0 T 41 3025 4597 * 5266 5870 * * 3314 * 5827 * * 4941 * * 3869 1135 3080 * * 41 65 4505 * 1000 1000 * * 4354 1794 0 D 42 * * 2682 1549 * * 5387 * 2943 5694 * 4449 3044 6556 * 3635 3816 * * * 42 91 4026 * 1000 1000 * * 4354 1910 0 D 43 * * 970 3082 * * * 4372 4719 * * 3405 * 4867 4652 * * 3313 * 5961 43 250 2654 * 506 1758 * * 4350 2971 0 V 44 * * * * * * * 1831 * * * 5401 * * * * * 524 * * 44 0 * * * * * * 4350 0 0 R 45 * 4060 * * * * 4339 4639 1587 * 5961 * * * 1490 * 5408 4656 4235 5097 45 0 * * * * * * 4350 0 0 L 46 * * * * 5378 * * 949 4467 2214 5185 * * * * * 5520 2756 * * 46 0 * * * * * * 4353 0 0 A 47 6047 * 554 4095 * 5831 6157 * * * * 5727 * 5348 5807 2983 5270 * * * 47 0 * * * * * * 4353 0 0 P 48 4821 * * 3420 * 5718 * 6157 4382 * 5374 3314 1910 3945 * 4029 2201 4167 * * 48 0 * * * * * * 4353 0 0 E 49 3769 * 2675 2060 * 4274 * * 3010 * * 5727 * 4949 2606 3243 4903 * * * 49 0 * * * * * * 4353 0 0 L 50 * * * * 5181 * 4465 3752 * 676 * * * 5685 * * * 2269 * * 50 0 * * * * * * 4353 0 0 N 51 5671 * * * * * * * * * * 145 * * * 4183 * * * 5590 51 0 * * * * * * 4353 0 0 Q 52 * * * 1823 * * 4276 * 1575 5071 5553 3238 * 4672 4465 4349 5408 5970 * * 52 30 5590 * 2322 322 * * 4353 1000 0 A 53 2121 * * 4447 2378 * 6647 4424 2899 3628 * * * 4349 5142 * 4792 5831 * 2950 53 0 * * * * * * 4353 0 0 I 54 4465 * * * * * * 1070 * 2240 * * * * * * * 1907 * * 54 0 * * * * * * 4353 0 0 W 55 * 5553 * * 4333 * * * * 5516 * * 5590 5181 4465 * * * 344 5270 55 0 * * * * * * 4353 0 0 K 56 2237 * 7098 2891 * * 5408 5142 4338 5618 5831 4662 * * * 1204 4931 * * * 56 0 * * * * * * 4353 0 0 R 57 * * * 4371 * 5476 4497 * 1597 * * 4149 * 4500 1140 * * * * * 57 0 * * * * * * 4353 0 0 G 58 4465 * * * * 205 * * * * * * * * * 3521 * * * * 58 0 * * * * * * 4353 0 0 V 59 4335 * * * * 5487 * 1061 5142 3537 5318 5086 * * 3692 3806 4240 3677 * * 59 0 * * * * * * 4353 0 0 K 60 * * * 2700 5086 * 5638 * 2788 * * 4550 * 3274 1279 3815 5476 * * * 60 40 5181 * 0 * * * 4353 1000 0 G 61 * 5142 5318 * * 3887 3145 * 1385 * * 1650 * * * 3951 * * * * 61 6 7821 * 4644 59 * * 4353 1000 0 V 62 * * * * * 4465 * 3687 * 5145 * * 1087 * * * 4064 1652 * * 62 0 * * * * * * 4353 0 0 E 63 5374 * * 4800 * * * * * * * * 246 5438 5318 5685 * 5086 * * 63 0 * * * * * * 4353 0 0 Y 64 3699 * 4406 * 5360 3819 3779 5618 4436 * * 4051 * * 2276 2848 3468 4504 5685 3615 64 0 * * * * * * 4353 0 0 R 65 5960 * * * * 5491 * * 1270 5388 * * * 4421 1070 * * * * * 65 0 * * * * * * 4343 0 0 L 66 * * * * 5479 * * 1093 * 3344 5572 * * * * * * 1361 * * 66 0 * * * * * * 4343 0 0 R 67 * * * * * * 5974 5918 3267 * * 5666 4936 5459 573 3623 4837 * * * 67 0 * * * * * * 4315 0 0 L 68 * * * * * * * 2490 * 3306 5295 * * * * * * 524 * * 68 0 * * * * * * 4315 0 0 R 69 * * 5833 4923 * * * 3958 2379 4431 * * * 3540 1097 * * 3826 * 5467 69 0 * * * * * * 4351 0 0 I 70 4027 4999 * * 4148 * * 3149 * 2074 3470 * * * * 4206 * 1489 * * 70 0 * * * * * * 4360 0 0 S 71 3647 5940 * 2467 * * * 5644 * * * * * 4698 3805 1497 2588 3788 * * 71 0 * * * * * * 4285 0 0 R 72 * * * 5172 4373 * * 5591 1633 5496 * * * * 920 * * 5051 * * 72 0 * * * * * * 4285 0 0 K 73 * * 3792 2919 4014 * * 4728 1069 * 4957 * * * 2564 * * 5805 * * 73 0 * * * * * * 4177 0 0 R 74 3673 4551 4735 3220 * 3862 2738 * 3112 4928 * * 4486 * 2216 4924 4604 4922 * * 74 0 * * * * * * 4047 0 0 N 75 4894 * 2059 1923 * * * * 3000 * * 1566 * * * * * * * * 75 0 * * * * * * 4010 0 0 E 76 * * 1993 952 * * * * 4145 * * * * * * 4222 3415 5159 * * 76 0 * * * * * * 3708 0 0 E 77 * * 773 2215 * 2875 * * * * * 6102 * * * * 4357 * * * 77 0 * * * * * * 3486 0 0 E 78 * * 3275 271 * * * * 3876 * * * * * * * * * * * 78 0 * * 0 * * * 2980 0 0 //