HHsearch 1.5 NAME c1re3A_ FAM FILE c1re3A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1re3A_.a3m DATE Thu Mar 11 09:55:54 2010 LENG 60 match states, 60 columns in multiple alignment FILT 12 out of 16 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.2 EVD 0.4469 1.0878 SEQ >ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCCCCCCCHHHHHHHHHHHHTTTC >sa_dssp EEEEEECEEDDDECDEDCEDCDDDCEDCDEDEEEDEECEECEBEDEDBDDDCEECDEEDE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 947999986999999999875543332424000478788888636667999999986409 >Consensus xxixxLxxxvxxQxxxmxRLEVDIDIklRsCKGSCarxxxxxvdxxxyxxxqKqlxqvxa >c1re3A_ QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA >UniRef50_P02672(153-212:615) Fibrinopeptide A n=2 Tax=Bos taurus RepID=FIBA_BOVIN E=2e-22 s/c=1.77 id=80% cov=102% QRIKVLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA >UniRef50_Q6PUQ0(149-204:370) Hepatic stimulate substance 1 (Fragment) n=1 Tax=Chiloscyllium plagiosum RepID=Q6PUQ0_9CHON E=6e-05 s/c=0.87 id=37% cov=95% ----ILKNNIIEQYKEISRLEVDIDIKLRACKGSCAKSFAYIIDKNLNEEMEKNITSITS >UniRef50_P06399(151-210:782) Fibrinopeptide A n=9 Tax=Muroidea RepID=FIBA_RAT E=1e-20 s/c=1.67 id=79% cov=102% QQIQVLQKDVRDQLIDMKRLEVDIDIKIRSCKGSCSRSVSREINLKDYEGQQKQLEQVIA >UniRef50_P14448(151-209:741) Fibrinopeptide A n=11 Tax=Tetrapoda RepID=FIBA_CHICK E=2e-18 s/c=1.59 id=53% cov=95% -RIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQ--- >UniRef50_Q4THX1(145-202:609) Chromosome undetermined SCAF2607, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodontidae RepID=Q4THX1_TETNG E=2e-16 s/c=1.50 id=47% cov=95% --LAALKDRVRDQVSEMQRLEVDIDIKLRSCKGSCERYSAYQMEVGSYVALEKQLKQL-- >UniRef50_Q6DHS2(148-205:684) Fibrinogen alpha chain n=2 Tax=Danio rerio RepID=Q6DHS2_DANRE E=9e-16 s/c=1.46 id=42% cov=98% --LDALKSQVKDQVVVMQRLEVDIDIKLRTCKGSCASYSEFSVDRESYVTLDKQMDNLNA >UniRef50_P02674(137-181:966) Fibrinopeptide A (Fragment) n=1 Tax=Petromyzon marinus RepID=FIBA1_PETMA E=4e-09 s/c=1.38 id=37% cov=77% --------NIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEK------- >UniRef50_P33573(154-201:641) Fibrinopeptide A n=1 Tax=Petromyzon marinus RepID=FIBA2_PETMA E=6e-06 s/c=1.08 id=31% cov=82% -----LRNGIAQQTSTILQLEVDTDVALRTCKGACARQVRYRVDKEMNLQLEK------- >UniRef50_O97645(1-39:410) Fibrinogen A-alpha chain (Fragment) n=1 Tax=Macropus rufus RepID=O97645_MACRU E=3e-10 s/c=1.70 id=70% cov=67% ---------------------VDIDIKIRSCKGSCSGSLARELNIKTYEEEQKQLEKVAA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 1226 0 0 H 2 * * * * * * 2116 * * * * * * 2044 925 * * * * * 2 0 * * * * * * 1494 0 0 I 3 * * * * * * * 692 * 1392 * * * * * * * * * * 3 0 * * * * * * 1881 0 0 Q 4 2461 * 2327 * * * * * 1643 * * * * 1742 * * * * * * 4 0 * * * * * * 1881 0 0 L 5 1162 * * * * * * 2428 * 3003 * * * * * * * 2044 * * 5 0 * * * * * * 2054 0 0 L 6 * * * * * * * * * 0 * * * * * * * * * * 6 0 * * * * * * 2223 0 0 Q 7 * * * * * * * * 1357 * * * * 1236 2433 * * * * * 7 0 * * * * * * 2223 0 0 K 8 * * 2996 * * * * * 1667 * * 1214 * * * 2958 * * * * 8 0 * * * * * * 2223 0 0 N 9 * * 3276 * * 2759 * * * * * 1228 * 3164 3180 3319 * * * * 9 0 * * * * * * 2261 0 0 V 10 * * * * * * * 1038 * * * * * * * * * 963 * * 10 0 * * * * * * 2261 0 0 R 11 2759 * * * * * * 3023 2136 * * * * 3319 1316 * * * * * 11 0 * * * * * * 2261 0 0 A 12 3346 * 1270 2164 * * * * * * * * * 2759 * * 3108 * * * 12 0 * * * * * * 2261 0 0 Q 13 * * * * * * * * * * * * * 0 * * * * * * 13 0 * * * * * * 2261 0 0 L 14 * * * * * * * * * 1780 * * * * * * 2759 1191 * 3023 14 0 * * * * * * 2261 0 0 V 15 * * * * * * * 3276 3023 * * * * * * 1419 * 1323 * * 15 0 * * * * * * 2261 0 0 D 16 * * 1780 1584 * * * * * * * * * 3108 * * 2759 3164 * * 16 0 * * * * * * 2261 0 0 M 17 * * * * * * * 1371 * * 705 * * * * * * * * * 17 0 * * * * * * 2261 0 0 K 18 * * * * * * * * 1353 1923 * * * 2172 * 3023 * * * * 18 0 * * * * * * 2261 0 0 R 19 * * * * * * * * * * * * * 2759 231 * * * * * 19 0 * * * * * * 2261 0 0 L 20 * * * * * * * * * 178 * * * * * * * 3108 * * 20 0 * * * * * * 2261 0 0 E 21 * * * 0 * * * * * * * * * * * * * * * * 21 0 * * * * * * 2261 0 0 V 22 * * * * * * * * * * * * * * * * * 0 * * 22 0 * * * * * * 2221 0 0 D 23 * * 0 * * * * * * * * * * * * * * * * * 23 0 * * * * * * 2221 0 0 I 24 * * * * * * * 192 * * * * * * * * 3005 * * * 24 0 * * * * * * 2221 0 0 D 25 * * 0 * * * * * * * * * * * * * * * * * 25 0 * * * * * * 2221 0 0 I 26 * * * * * * * 344 * * * * * * * * * 2238 * * 26 0 * * * * * * 2221 0 0 K 27 2238 * * * * * * * 344 * * * * * * * * * * * 27 0 * * * * * * 2221 0 0 I 28 * * * * * * * 1020 * 980 * * * * * * * * * * 28 0 * * * * * * 2221 0 0 R 29 * * * * * * * * * * * * * * 0 * * * * * 29 0 * * * * * * 2221 0 0 S 30 2521 * * * * * * * * * * * * * * 960 1682 * * * 30 0 * * * * * * 2221 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 2221 0 0 R 32 * * * * * * * * 202 * * * * * 2938 * * * * * 32 0 * * * * * * 2221 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 2221 0 0 S 34 3005 * * * * * * * * * * * * * * 192 * * * * 34 0 * * * * * * 2221 0 0 C 35 * 0 * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 2221 0 0 S 36 1041 * * 3296 * * * * * * * * * * * 1279 * * * * 36 0 * * * * * * 2221 0 0 R 37 * * * * * 3631 * * 3422 * * * * * 462 3325 * * * * 37 0 * * * * * * 2221 0 0 A 38 1912 * * * * * * * * * * * * 3005 * 1640 * * * 1791 38 0 * * * * * * 2221 0 0 L 39 * * * * 2521 * * * * 1205 * * * * * 2311 * 2394 * * 39 0 * * * * * * 2221 0 0 A 40 1564 * 3627 1950 * * * * * * * * * * 3005 2951 3877 * * * 40 0 * * * * * * 2221 0 0 R 41 * * * * 3325 * 3803 * * * * * * * 1554 * * * * 1035 41 0 * * * * * * 2221 0 0 E 42 * * * 1876 * * * 3422 3803 * * * * 1995 2238 3325 * * * * 42 0 * * * * * * 2221 0 0 V 43 * * * * * * * 2138 * 2572 3296 * * * * * * 992 * * 43 0 * * * * * * 2221 0 0 D 44 * * 539 3296 * * * * * * * 2251 * * * * * * * * 44 0 * * * * * * 2221 0 0 L 45 * * * * * * * 3631 1372 1593 * * * * 3325 * * 3296 * * 45 0 * * * * * * 2221 0 0 K 46 * * * 1107 * 3296 * * 1852 * * 3422 * * 3975 * * * * * 46 0 * * * * * * 2221 0 0 D 47 * * 1593 * * 3627 * * 3516 3422 3005 * * * * 2311 3631 * * * 47 0 * * * * * * 2221 0 0 Y 48 * * * * * * * * * * * 1712 * * * * * * * 525 48 0 * * * * * * 2221 0 0 E 49 * * 3627 1205 * * * * 3803 2238 * * * * * * * 2311 * * 49 0 * * * * * * 2221 0 0 D 50 3296 * 2938 2073 * 3926 * * * * * 2712 * 2238 * * 3325 * * * 50 0 * * * * * * 2221 0 0 Q 51 * * * 3631 * * * 3627 * 1274 3422 * * 1593 * * * * * * 51 0 * * * * * * 2221 0 0 Q 52 * * 3325 1297 * * * * * * * * * 1020 * * * * * * 52 0 * * * * * * 2221 0 0 K 53 * * * * * * * * 0 * * * * * * * * * * * 53 0 * * * * * * 2221 0 0 Q 54 * * * * * * 3265 * * * * 2756 * 419 * * * * * * 54 0 * * * * * * 2107 0 0 L 55 * * * * * * * 2756 * 494 2814 * * * * * * * * * 55 0 * * * * * * 2107 0 0 E 56 * * 2814 1052 * * * * 3017 * * * * * * * 1988 * * * 56 0 * * * * * * 2107 0 0 Q 57 * * * * * * * * 3356 * * 2814 * 708 * 2756 * * * * 57 0 * * * * * * 2107 0 0 V 58 * * * * * * * 2495 * 1804 * * * * * * * 899 * * 58 0 * * * * * * 2061 0 0 I 59 3031 * * * * * * 1372 * * * 2385 * * * * 1737 * * * 59 0 * * * * * * 1999 0 0 A 60 336 * * * * * * * * * * * * * * 2267 * * * * 60 0 * * 0 * * * 1999 0 0 //