HHsearch 1.5
NAME  c1r7gA_
FAM   
FILE  c1r7gA_
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1r7gA_.a3m 
DATE  Wed Mar 10 17:10:29 2010
LENG  31 match states, 31 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4724  2.6579 
SEQ
>ss_dssp
CTTHHHHHHHHHHHHHHHHHHHHHHSCCSCC
>sa_dssp
EEDEEEEEEDEDCEEEDEEDEEEEEEEDEEE
>ss_pred
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>ss_conf
9447989999999999989998877644279
>Consensus
sgswlrdiwdwicxilxdfkxwlxaklxpxl
>c1r7gA_
SGSWLRDIWDWICEVLSDFKTWLKAKLMPQL
>UniRef50_Q68749(1977-2007:3037) RNA-directed RNA polymerase n=63669 Tax=Viruses RepID=POLG_HCVBB   E=1e-09 s/c=2.07 id=69% cov=103%
SGSWLRDVWDWVCSILIDFKNWLSAKLFPRL
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
S 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	1
       0	*	*	*	*	*	*	1223	0	0	

G 2    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1223	0	0	

S 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	3
       0	*	*	*	*	*	*	1223	0	0	

W 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	4
       0	*	*	*	*	*	*	1223	0	0	

L 5    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1223	0	0	

R 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	6
       0	*	*	*	*	*	*	1223	0	0	

D 7    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1223	0	0	

I 8    *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	8
       0	*	*	*	*	*	*	1223	0	0	

W 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	9
       0	*	*	*	*	*	*	1223	0	0	

D 10   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1223	0	0	

W 11   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	11
       0	*	*	*	*	*	*	1223	0	0	

I 12   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	12
       0	*	*	*	*	*	*	1223	0	0	

C 13   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1223	0	0	

E 14   *	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	14
       0	*	*	*	*	*	*	1223	0	0	

V 15   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	15
       0	*	*	*	*	*	*	1223	0	0	

L 16   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1223	0	0	

S 17   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	*	*	17
       0	*	*	*	*	*	*	1223	0	0	

D 18   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1223	0	0	

F 19   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1223	0	0	

K 20   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1223	0	0	

T 21   *	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	1000	*	*	*	21
       0	*	*	*	*	*	*	1223	0	0	

W 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	22
       0	*	*	*	*	*	*	1223	0	0	

L 23   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1223	0	0	

K 24   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	24
       0	*	*	*	*	*	*	1223	0	0	

A 25   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1223	0	0	

K 26   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1223	0	0	

L 27   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1223	0	0	

M 28   *	*	*	*	1000	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1223	0	0	

P 29   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1223	0	0	

Q 30   *	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	30
       0	*	*	*	*	*	*	1223	0	0	

L 31   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	0	*	*	*	1223	0	0	

//