HHsearch 1.5 NAME c1qfwB_ FAM FILE c1qfwB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1qfwB_.a3m DATE Thu Mar 11 10:50:21 2010 LENG 110 match states, 110 columns in multiple alignment FILT 53 out of 57 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4292 -0.8711 SEQ >ss_dssp CCSSSCBSEEEEEEEEECCTTCSCCEEEEEEEEECBCCCCCCCSSTTCCCCCCCEEEEEEEEEEEEECTTCCTTSCCEEEEEEEEEEEEECCCTTTCCCS SSCSSCSSCC >sa_dssp DEEECDECDDDECECCBECEDBEDCDDBEBCCCDDECDEEEDEEEEEEEECEECDCCDEDDDECEDEAEECDEECECDBEBCBBDCBBCDECEEEECEEE EEEEEEDDCE >ss_pred CCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC CCCCCCCCCC >ss_conf 9878887305876999974888884699962044773042402116677554350126874899999377888898249980005643478889841211 1247887679 >Consensus xxxxxxxCxxxnxtxxxEkxgCxxcxxVxttxCxGxCxTxexxxxxpxxxxxqxvCtyxxxxyxtvxLpxCxxgVdPxfxYpvAxSCxCxxCxtxxTdCx xxxxxpxxcx >c1qfwB_ KEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCG GPKDHPLTCD >UniRef50_P01225(21-122:129) Follitropin subunit beta n=35 Tax=Tetrapoda RepID=FSHB_HUMAN E=2e-30 s/c=1.30 id=37% cov=94% -------CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCT VRGLGPSYC- >UniRef50_Q5TQD0(46-148:171) AGAP008302-PA n=4 Tax=Arthropoda RepID=Q5TQD0_ANOGA E=2e-14 s/c=0.78 id=25% cov=70% ---------------------------VSVLSCWGRCDSNEiSDWRFPYKRSHHPVCVHAGRTKAVALLRHCHPDADPAarqYEYMEPKSCNCQTCSSTD TSCEGPK------- >UniRef50_C6SUS0(113-194:195) Putative glycoprotein hormone-beta5 n=1 Tax=Ciona intestinalis RepID=C6SUS0_CIOIN E=2e-13 s/c=0.94 id=26% cov=75% ------------------RRGCHNKTYTRIQKCEGYCESYEIPKVNDRIERIHSVCTAQTTRTVRVVNPYCEPGVNPFFYITVPTSCNCRNCDPTRAIC- ---------- >UniRef50_UPI0000588683(44-118:135) PREDICTED: similar to glycoprotein hormone subunit beta 5 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000588683 E=2e-11 s/c=0.93 id=27% cov=68% ----------------AEKSGCDSSI-INVRGCWGRCDSYQvPSLLTKLFDVSHPMCTPASYKNITVTLENCAPGIDPTFTYVEATTCGCRK-------- ----------- >UniRef50_Q8JG63(25-127:130) Gonadotropin I beta subunit n=1 Tax=Plecoglossus altivelis RepID=Q8JG63_PLEAT E=1e-19 s/c=0.94 id=31% cov=94% -------CQLANISITLEKTECGsHPVIIETTSCTGMCGTKDWNYISSSGQEPQVTCNFKEWSYGTYYMQDCPFGVDPVLTYPVAKSCACTTCSIASTEC DPMHMDMASC- >UniRef50_C6SUR8(37-134:134) Putative glycoprotein hormone-beta5 n=1 Tax=Strongylocentrotus purpuratus RepID=C6SUR8_STRPU E=3e-17 s/c=0.91 id=30% cov=87% -------CHVRQYLQYkAEKPGCRPQNLV-LDACFGRCDTYEvPELEFPFKSSHHEMCSYHQVQLATIELDDCDPGVNRTYTYRNAKSCKCRNCTPFNTF CFGLS------- >UniRef50_C6SUQ8(50-127:141) Putative glycoprotein hormone-beta5 n=2 Tax=Acyrthosiphon pisum RepID=C6SUQ8_ACYPI E=3e-11 s/c=0.89 id=37% cov=32% -------------------------------------------------------------------LKNCEEGVQPgteFYVFPQAMSCKCHTCKSSEA ACEG--------- >UniRef50_C6SUS1(143-221:225) Putative glycoprotein hormone-beta5 n=1 Tax=Ciona savignyi RepID=C6SUS1_CIOSA E=8e-10 s/c=0.82 id=25% cov=73% -------------------EGCDRPRVVY-RRCHGFCSTSEVAEVNGGFVRNHSVCAPSFTVTRRLPYNNCVDGVRRFFHVTVPVRCACMACDPRTTRC- ---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 1000 * * * * * 1000 * * * * * 1 0 * * * * * * 1099 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1099 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 1854 0 0 L 4 * * * * * * * * * 1584 * * * * * 1208 * 2097 * * 4 0 * * * * * * 2062 0 0 R 5 * * * * * 2716 * * 2801 * * 2837 * * 826 * * * * * 5 0 * * * * * * 2406 0 0 P 6 3542 * * * * * 3695 * * * * * 549 * * 2706 * * * * 6 0 * * * * * * 3020 0 0 R 7 * * * * * * * * * 2175 3097 * 1933 * 1758 * * 4144 4395 * 7 0 * * * * * * 3117 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 3779 0 0 R 9 2776 5354 * 3996 * * 2338 3964 4976 * 5128 * * 2247 3133 4654 5018 4338 * * 9 0 * * * * * * 3779 0 0 P 10 * * * * * * * * * 1323 5018 * 1481 * * * * 2242 * * 10 0 * * * * * * 3779 0 0 I 11 3953 * * 5183 * * 4976 2857 3345 * * 4928 * * 2242 5018 1790 3730 * * 11 0 * * * * * * 3779 0 0 N 12 * * 3411 2514 * * * * * * * 764 * 3154 5071 * * * * * 12 0 * * * * * * 3846 0 0 A 13 3774 * * 5602 3551 * * 2177 * * 4958 * * 3562 * * 5063 2941 * 1630 13 0 * * * * * * 3846 0 0 T 14 * * * * * * * 5439 * 4226 4245 4085 * * * 2464 665 * * * 14 0 * * * * * * 3846 0 0 L 15 * * * * 2427 * * 1435 * 2855 3478 * * 4226 * * * 2618 * * 15 0 * * * * * * 3846 0 0 A 16 2501 * * * * 5221 4686 * * 5150 * * 4139 5262 * 2474 2570 5003 * 1905 16 79 4226 * 0 * * * 3846 1000 0 V 17 1634 * * 5320 * * * 2855 * 3127 * * * * * * * 1322 * * 17 0 * * * * * * 3913 0 0 E 18 * * 5551 239 * * * * 5306 * * * * * 4244 * * 4233 * * 18 0 * * * * * * 4057 0 0 K 19 * * * * * * * * 645 * 5335 * * * 2074 3350 * * * * 19 115 * 3704 * * * * 4172 0 0 E 20 * * 3292 1293 * * 4847 * * * * * 3111 3690 2563 4048 4957 * * * 20 0 * * * * * 0 4186 0 1287 G 21 * * 3581 1413 * 963 5167 * * * * * * * * * * * * * 21 0 * * * * 0 * 4186 0 1287 C 22 * 75 * * * * * * * * * * * * * 4306 * * * * 22 0 * * * * * * 4289 0 0 P 23 3702 * 3348 4853 4728 2079 3892 * * * * 3792 2294 * 2982 4444 * * * * 23 41 5160 * 0 * * * 4289 1000 0 V 24 * * * 5424 3745 2979 3258 4324 5922 5403 * 3965 4577 4377 2735 3741 4614 3950 * 3379 24 120 * 3646 * * * * 4289 0 0 C 25 4861 854 * * * * * * 3308 * * * 3626 4450 * 2882 4348 * * * 25 0 * * * * 0 * 4222 0 1610 I 26 * * * 4418 * 4389 4193 2187 * 2661 3680 4577 * 3553 3402 * 4599 2920 * * 26 88 * 4076 * * * * 4289 0 0 T 27 2516 3817 * * 5437 * 5577 3981 * 4138 5624 * 5964 4949 5642 3782 2409 3282 * 2861 27 65 4494 * 1585 585 0 * 4490 1000 1597 V 28 4860 * * * 4814 * * 1208 * * * * * * * * 4784 1117 * * 28 44 * 5046 * * * * 4626 0 0 N 29 * * * 3732 * * 5310 * 5125 4143 * 1592 * 5801 4243 3115 2103 * * 3974 29 67 * 4463 * * 0 * 4590 0 1000 T 30 * * * * * * * 3866 * 4970 * * * * * * 643 1948 * * 30 33 * 5464 * * 0 * 4486 0 1000 T 31 * * 2850 * * * * * * 5199 * 4933 3616 4742 3823 4634 1038 5173 5276 5017 31 0 * * * * * 0 4613 0 1000 I 32 2005 * * * * 5277 * 1663 3799 * * * * * 4501 2489 * 4424 3870 * 32 0 * * * * 0 * 4625 0 1000 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 4606 0 0 A 34 2494 * * 2949 5133 3911 4540 * 5327 * 4923 * * * * 2855 3712 * 2121 4247 34 0 * * * * * * 4606 0 0 G 35 * * * * * 0 * * * * * * * * * * * * * * 35 0 * * * * * * 4606 0 0 Y 36 * * * * 3719 * 3726 * * 4728 3749 * * 4775 1574 * 5210 * * 1569 36 0 * * * * * * 4606 0 0 C 37 * 0 * * * * * * * * * * * * * * * * * * 37 39 * 5230 * * * * 4606 0 0 P 38 * * 1991 2776 3682 5420 * 6230 * 4322 4949 * 4358 3961 4107 4004 * 5873 * 2689 38 0 * * * * * 0 4615 0 1064 T 39 * * * * * * 4592 * * 5675 * * * * * 1735 647 * * * 39 0 * * * * 0 * 4615 0 1064 M 40 * * * 4063 5289 * * * 2900 * 3257 3893 * 4837 2265 3062 5556 * 3510 2869 40 0 * * * * * * 4610 0 0 T 41 5740 * 1518 1082 * * * * * * 5856 * * 3297 * * 4611 * * * 41 520 1725 * 0 * * * 4610 3014 0 R 42 * * 5740 * * * * 3272 * 3071 * * 1371 * 3747 2533 5318 3707 5433 * 42 109 4196 5755 0 * * * 4610 1560 0 V 43 4066 * 2236 5089 * * 5297 5066 * * * 2404 3842 * * 5312 3866 1781 * * 43 0 * * * * 0 * 4613 0 1000 L 44 * 5837 * 4546 5880 6171 5252 3235 4832 2285 4442 * * * * 4889 * 4643 2955 1799 44 0 * * * * * * 4610 0 0 Q 45 * * * 3016 * 5755 * 3591 1865 3668 * 5240 * 3428 2831 5297 5339 3682 * 4889 45 0 * * * * * * 4610 0 0 G 46 5856 * 4465 5054 2445 3566 3841 4060 * 6171 5142 3682 3056 * * 2162 4450 * * * 46 39 * 5222 * * * * 4610 0 0 V 47 5553 * 4816 * 4651 4533 4761 * 4262 4350 * 3801 971 * * 4037 5524 4902 * 5383 47 29 * 5674 * * 977 1024 4615 0 1471 L 48 4305 * * 5234 2557 4530 5930 4347 * 2204 4759 * * * 4813 5385 * 4071 5501 2005 48 40 5200 * 2000 415 878 1133 4610 1063 1417 P 49 4872 * 5250 5550 3884 3074 * 3575 2448 5532 * 5908 3446 * 3102 3007 5284 5038 * 4732 49 71 4375 * 1000 1000 * 0 4604 1540 1000 A 50 3656 * 4656 3247 4520 5700 5250 5137 2978 5732 * 5146 3204 4111 2970 3903 3889 4165 * * 50 58 4666 * 1000 1000 0 * 4604 1405 1000 L 51 4187 * 5723 5456 5599 * * 3897 5985 2975 * 5962 2940 * 3163 1881 * 3602 5254 4847 51 21 6087 * 1000 1000 * * 4613 1000 0 P 52 4770 * * 4805 4703 * 2758 3410 3264 4318 * 3079 3512 * * 3010 5750 5221 * 3088 52 19 6273 * 1000 1000 * * 4613 1000 0 Q 53 * * * 5407 * * 1236 * * * * 5254 * 928 * * * * * * 53 0 * * * * * * 4613 0 0 V 54 * * 4133 4136 * 5561 4118 * 3519 5750 * 3541 2464 4506 3270 2668 4339 3644 * * 54 0 * * * * * * 4613 0 0 V 55 4244 * * * * 4544 * 3116 * * 3674 * * * * 4447 3381 814 * * 55 0 * * * * * * 4613 0 0 C 56 * 0 * * * * * * * * * * * * * * * * * * 56 0 * * * * * * 4613 0 0 N 57 4556 * * * * 5712 * 5346 * * 5326 2886 * 5294 * 3561 890 3270 * * 57 88 * 4075 * * * * 4613 0 0 Y 58 3940 * * * 3048 * 2846 * * * * * 3804 * * * * * * 729 58 0 * * * * 0 * 4566 0 1287 R 59 3843 * 3295 * * 2419 5153 * 2627 * * 3707 * 3568 2676 4556 4448 5254 * 5673 59 0 * * * * * * 4613 0 0 D 60 4645 * 2143 1972 4556 3825 * * 4654 * * 5092 * 3669 4832 4331 3214 5294 * * 60 0 * * * * * * 4613 0 0 V 61 * * * * 3688 * * 3809 5254 2597 * * * * 2676 6106 2590 2641 3066 4551 61 0 * * * * * * 4613 0 0 R 62 * * * 3089 6038 5830 * 3332 3265 * * 5673 * 4312 2023 3037 4685 2832 * 5096 62 0 * * * * * * 4613 0 0 F 63 5998 * * * 4153 * 6087 * 5460 3594 * 5337 3696 6182 4448 * 2888 * 5294 1042 63 0 * * * * * * 4613 0 0 E 64 3643 * 5599 1852 * 4333 6209 5337 3524 4106 6087 * * 4282 2224 5673 * 3480 * * 64 0 * * * * * * 4613 0 0 S 65 * * * * * * * 5360 5561 * * * * 5146 2726 3171 889 3013 * * 65 0 * * * * * * 4613 0 0 I 66 2997 * * 5310 5161 * * 2806 4075 3780 6087 * * * * * 5386 1159 5580 4670 66 0 * * * * * * 4613 0 0 R 67 5712 5892 5580 2763 4126 * 4805 3755 3940 5460 * * 4556 3346 2614 5802 3011 4305 * 4508 67 0 * * * * * * 4613 0 0 L 68 * * * * 6026 * * 2900 * 586 4348 4054 * * * * * 4935 * 4552 68 0 * * * * * * 4652 0 0 P 69 * * 5307 3505 * * 5785 * 4248 * * 4552 927 4411 3654 3759 5296 * 5535 * 69 0 * * * * * * 4652 0 0 G 70 * * 2413 * * 1222 3962 * * * * 2054 * * * 5761 * * * 4054 70 0 * * * * * * 4652 0 0 C 71 * 0 * * * * * * * * * * * * * * * * * * 71 0 * * * * * * 4652 0 0 P 72 2937 * 2685 3437 5026 * 4562 * * 5701 * 5366 1291 4708 * 6005 * 4552 * * 72 0 * * * * * * 4652 0 0 R 73 5831 * 3233 3697 5425 5026 4443 4806 * 4127 * 5478 1327 * 4478 4734 * 3288 * * 73 0 * * * * * * 4652 0 0 G 74 * * 3046 * * 729 2361 * 5589 * * 5831 * * * * * * 6005 5201 74 33 * 5446 * * * * 4652 0 0 V 75 2484 * * * * * * 4283 * * * * 5186 * * 4332 5669 571 * * 75 60 * 4622 * * * 0 4634 0 1000 N 76 5138 * 939 2937 * * * * * * * 2172 * 5938 4524 * 4727 * * * 76 33 5469 * 1585 585 * 0 4562 1000 1287 P 77 * * * * * * * * * * * * 352 * 2968 3494 * * * * 77 165 3211 * 1585 585 * 0 4562 2032 1287 V 78 5474 * * * 2559 * 4213 3991 4479 2896 * * * * * 4197 2108 3057 * 3250 78 64 4516 * 1585 585 1462 651 4565 1248 1287 V 79 * * * * 1248 * 5459 * * 4560 * * * * * * * 2646 * 1498 79 34 * 5434 * * 0 * 4611 0 1110 S 80 5667 * 7102 3452 5294 * 2845 4354 5389 * * 5941 * 5586 * 3299 1393 3959 * 4047 80 0 * * * * 0 * 4619 0 1000 Y 81 * * * * 3171 * * 3635 * 5531 * * * * * * * 3521 * 515 81 0 * * * * * * 4635 0 0 A 82 5081 * * * 4894 * 5395 5225 * 3843 3965 * 819 * 5300 * 3323 4045 * * 82 0 * * * * * * 4635 0 0 V 83 5493 * 5243 2687 * * * 5061 * * * 3323 * 6009 * * * 620 * * 83 0 * * * * * * 4635 0 0 A 84 186 * * * * * * * * * * * 3046 * * * * * * * 84 0 * * * * * * 4635 0 0 L 85 4427 * * 4387 * * * 4228 3123 1400 6009 * * * 4047 * 2820 2828 * * 85 0 * * * * * * 4635 0 0 S 86 * * * 5109 * 4427 * * * * * 3072 * 5977 3402 574 5432 * * * 86 0 * * * * * * 4635 0 0 C 87 * 0 * * * * * * * * * * * * * * * * * * 87 0 * * * * * * 4635 0 0 Q 88 3951 * 3926 2700 * 5432 2741 * 2820 * * 3739 * 3935 2856 4030 * 4559 * 5692 88 0 * * * * * * 4635 0 0 C 89 * 0 * * * * * * * * * * * * * * * * * * 89 0 * * * * * * 4635 0 0 A 90 3657 * 4331 * * 2371 6009 5512 4722 * 4597 * * 3570 2953 2420 2636 * * * 90 0 * * * * * * 4635 0 0 L 91 3502 * * * * * * * 2340 3193 4139 4210 5848 3324 3174 * 2473 3542 * * 91 0 * * * * * * 4635 0 0 C 92 * 43 * * * * * * * * * * 5088 * * * * * * * 92 0 * * * * * * 4509 0 0 R 93 4927 * 2565 * * * 5278 * 3305 * * 2079 4521 4998 4359 1993 5172 4965 * * 93 0 * * * * * * 4509 0 0 R 94 5278 * * * * 5874 * 4408 * 6374 3099 * 3147 * 4918 2362 1281 * * 5088 94 0 * * * * * * 4509 0 0 S 95 3584 * 1504 3841 5172 4262 4549 * 5231 * * 5916 * 4393 3773 2847 3864 * * * 95 0 * * * * * * 4509 0 0 T 96 * * 3300 4648 * * 5297 4887 * * * 2964 * 5231 3933 2925 1635 * 7018 3087 96 0 * * * * * * 4509 0 0 T 97 3340 * 4399 * * * * 5629 * * * 5172 * * * 2203 764 * * * 97 0 * * * * * * 4509 0 0 D 98 5929 * 1103 2693 5118 * * 4701 * * * 5371 * * 4374 2495 * * * 4432 98 0 * * * * * * 4482 0 0 C 99 * 0 * * * * * * * * * * * * * * * * * * 99 0 * * * * * * 4482 0 0 G 100 * * 3740 2623 4348 2073 * * * * * * * 4572 * * 1493 3670 * * 100 0 * * * * * * 4301 0 0 G 101 3696 * * * 3218 1715 * 4197 * * * * 4454 4575 3534 * 4877 2010 * * 101 0 * * * * * * 3973 0 0 P 102 4637 * 4572 2651 3389 * * * 4436 2692 4398 * 2488 4657 2677 4631 * * * * 102 0 * * * * * * 3831 0 0 K 103 4594 * * * * 2783 3250 * 2962 * * * 4276 * 4345 1062 * * * * 103 0 * * * * * * 3689 0 0 D 104 * * 3595 4084 * * * 4061 4079 1463 2239 * * * * 4381 * 4768 * 3648 104 0 * * * * * * 3388 0 0 H 105 4028 * 3101 2353 * 2278 2816 * * * * * * 2747 2951 * * * * * 105 0 * * * * * * 3388 0 0 P 106 * * * * * * * 4007 * * 3948 * 427 * * 3931 3977 * * * 106 0 * * * * * * 3305 0 0 L 107 2533 * 2073 * * * * * * 3349 * 3208 2865 * * 2407 4124 * * * 107 0 * * * * * * 3095 0 0 T 108 * * 4253 * 2187 * 4124 * * 4492 * * * * * 1958 3349 4204 * 2209 108 0 * * * * * * 3095 0 0 C 109 * 0 * * * * * * * * * * * * * * * * * * 109 0 * * * * * * 3095 0 0 D 110 * * 0 * * * * * * * * * * * * * * * * * 110 0 * * 0 * * * 1099 0 0 //