HHsearch 1.5 NAME c1nzeA_ FAM FILE c1nzeA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1nzeA_.a3m DATE Wed Mar 10 17:39:56 2010 LENG 112 match states, 112 columns in multiple alignment FILT 49 out of 53 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4027 -1.4962 SEQ >ss_dssp CCCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH HHHHHHHHHTCC >sa_dssp EDCDEDDDEEAAECACDBBDCACEADDCBEEECBEDACECADDCBDCADDAADCBBEECEEEDCECAEECBEDABDAADDABDAAEDECDECADDCCDDA CDBAEDBCEDCE >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH HHHHHHHHHHCC >ss_conf 9888899899999999999977999997300006999999977689999999999952396735999999999999999999999528889999999999 999999997519 >Consensus fxxpxxxxxxaxxrixxsaxxLxxlxxlixxxxWxxvxxxLRxxxxxLrxDlxxlxxxxxxxxrxxxxxLaxxlfxxlexLDxAarxkdxxxaxxxYxxt xxxldxvlaxig >c1nzeA_ FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQT VSNINEVLAKLG >UniRef50_B9GUT2(82-186:186) Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GUT2_POPTR E=7e-28 s/c=1.18 id=26% cov=95% ------SVEEAESGVRDYEQSLLQLKDLLGSQSWKEAQKVLRRRSSNLKLDLYAVIESKPGKDRTQLRTLYANLFNNVTKLDYAVREKDVSLVWQCYENI VASYDHILSRI- >UniRef50_B9HXY5(89-200:202) Predicted protein n=2 Tax=Populus trichocarpa RepID=B9HXY5_POPTR E=7e-28 s/c=1.11 id=24% cov=101% FFQPDLSPEDAVARITQTAEGLHSMRDMLESMAWRYVMFYIRQKQAYLSKDLKNAFSTLPPSRREDYVKKANELVDNMDEFDSYVRTPRVYESYLYYEKT LKSIDDIVAILG >UniRef50_Q8DHA2(46-148:152) Tll2057 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DHA2_THEEB E=2e-08 s/c=0.58 id=15% cov=77% --------------IEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTVAQEGFRE- ------------ >UniRef50_Q2JRG1(24-129:132) Putative uncharacterized protein n=2 Tax=Synechococcus RepID=Q2JRG1_SYNJA E=5e-15 s/c=0.77 id=19% cov=95% ----PVQAAAALPReLQQLEQHVERLQSLVDAEDWLEIRSYIHGPMGLTRKTLTSLANTLPQQQKREMLRLAKEMGRSLEELDFAAKAYDQPEVEAAQAK VRKTLQELRA--- >UniRef50_Q7U3C7(29-138:149) Putative uncharacterized protein n=3 Tax=Synechococcus RepID=Q7U3C7_SYNPX E=2e-13 s/c=0.70 id=16% cov=91% ----GINPDDLAVIRRQAAafeatkSRLPDLARLVSAEDWVFTRNLLHGPMQEVGREMSYINQRLDRSERKDADKIARKLKEALADLDEAARLQDGSRLQ RSYSNLAASFD------- >UniRef50_Q7XYI7(135-235:237) Oxygen-evolving enhancer protein 3 n=2 Tax=Chlorarachniophyceae RepID=Q7XYI7_BIGNA E=4e-13 s/c=0.75 id=25% cov=91% --------QETKKRAIGAEKKLTEAGSFVDKKYWSEGRTVLRRLVGTLRFDLAALADSKSGAAKKEAIKANKDFFEALESLDLAMYKKNVEAGQKAYQKT MAAYKATLS--- >UniRef50_Q8YX60(42-157:167) All1355 protein n=7 Tax=Nostocaceae RepID=Q8YX60_ANASP E=2e-19 s/c=0.83 id=15% cov=93% --VPPTYTSAQLEKIQGYAPDIQAVRDradelknLIQKKEWIKVGNFIHGPITEARLNMTYITPNLLPKDQATARQINKDFLNHLVKIDQAASAGNSPLA LNNYQAAVADID------- >UniRef50_Q5K268(105-202:203) Extrinsic protein in PSII (Fragment) n=2 Tax=Guillardia theta RepID=Q5K268_GUITH E=2e-13 s/c=0.78 id=21% cov=84% ----------------DSKKRLQSVEDYINNNEWDRSRTALRLGMYETRKAMIRINEASGS---QEAKDLFAKFKRQLEATDFALAKKDGALAFKLRAAT EVTFSQWLASVG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 102 * * * * * * * * * * * * * * 3873 1 0 * * * * * * 3304 0 0 Y 2 * * * * 1701 3426 * * * * * * * * * 2622 * 3636 * 1488 2 0 * * * * * * 3593 0 0 L 3 3211 * * 2350 3000 * * 2292 * 3411 3420 * * 4352 * * * 2941 * * 3 0 * * * * * * 4248 0 0 Q 4 3279 * * * * * * * * * * * 699 1831 * * * * * * 4 0 * * * * * * 4535 0 0 P 5 * * 2257 3851 * 2896 * * 3325 * * * 1037 * * * * * * * 5 0 * * * * * * 4748 0 0 L 6 * * * * * * * 2535 * 1144 4670 * 4460 3868 * 4432 3118 4053 * * 6 0 * * * * * * 4793 0 0 P 7 * * * 4538 * 3504 * * * 4448 * 4493 3847 4075 * 1565 2333 * * 3143 7 0 * * * * * * 4815 0 0 P 8 3258 * * * * 4920 * * * * * * 1121 4343 * 2875 3320 3889 * 4335 8 0 * * * * * * 4815 0 0 T 9 2111 * 4557 1541 * * * * 4505 * * 4122 * 4402 * 2443 4334 * * * 9 0 * * * * * * 4910 0 0 E 10 2594 * 1678 1497 4705 * * * * * * * * 4601 4597 * * * * 4423 10 61 4597 * 2000 415 * * 4910 1000 0 A 11 799 * 4600 * * * * * * 4579 4849 * * 3249 * 3797 2940 * * * 11 70 4408 * 0 * * * 4948 1000 0 A 12 1130 * * 3520 * * * 4600 4431 2067 * * * 4677 * * * 3466 * * 12 0 * * * * * * 4948 0 0 Q 13 1531 * * 3492 * * 3770 * 4431 * * * 4177 2681 4665 4022 4624 3432 * * 13 110 3770 * 1000 1000 * * 4948 1185 0 R 14 4988 * * * * 3648 * 4087 3707 * * * * 3675 697 * 6259 4477 * * 14 63 4539 * 0 * * * 5293 1000 0 A 15 2579 * * * * * * 1114 * 3180 * * * * 4289 * * 2257 * * 15 0 * * * * * * 5503 0 0 K 16 * * * 2999 * 5568 * 5043 1803 * * 4132 * 3229 1991 5253 4170 4650 * * 16 0 * * * * * * 5503 0 0 V 17 * * 3922 2611 5607 3056 * * 3182 5612 * 4191 * 2193 4365 3442 4802 4346 * * 17 0 * * * * * * 5675 0 0 S 18 2963 4191 * * * * 3937 * * 4815 * 3638 * 5238 * 1528 2693 * * 3210 18 0 * * * * * * 5675 0 0 A 19 691 * * 2529 * * * 5402 5010 * * * * 3339 5148 * * 5294 * * 19 37 5321 * 2585 263 * * 5675 1000 0 S 20 5066 * * 2211 3443 * * * 2611 4546 * 5668 4914 2783 4613 3240 4157 4191 * * 20 36 5353 * 2585 263 * * 5675 1000 0 E 21 * * 2034 2661 * 2621 4815 * 5015 * * 3397 * * 1985 5563 * * * * 21 0 * * * * * * 5675 0 0 I 22 * * * * 4014 * * 1883 * 742 4897 * * * * * * 4815 * * 22 120 3649 * 0 * * * 5675 1507 0 L 23 3922 * * 4815 5144 * 4308 4329 3523 1761 * * 3854 3004 4186 5148 4195 4148 * * 23 0 * * * * * * 5675 0 0 N 24 2168 * 2642 2934 * * 5384 * * * * 3112 * 4483 3112 2711 4887 * * * 24 0 * * * * * * 5701 0 0 V 25 4164 * * * * * * 3884 * 1224 2593 * * * * * * 1822 * * 25 0 * * * * * * 5701 0 0 K 26 4394 * * 1806 * 3637 * * 2310 * * * 4748 4248 1862 * * 5674 * * 26 0 * * * * * * 5701 0 0 Q 27 * * 1469 2400 * 3295 * * * * * 4358 4374 4730 5401 3098 4713 4875 * * 27 328 2299 * 2520 276 * * 5738 3495 0 F 28 * * 3378 * 2899 * * * * 1188 2973 * * * * 4875 * * * 2561 28 0 * * * * * * 5738 0 0 I 29 5798 * * * * * * 1189 * 1711 * * * * * * * 2072 * * 29 79 4232 * 1803 487 * * 5822 1349 0 D 30 3345 * 1808 2210 * 2734 * * 4240 * * 3336 * 4195 * 4539 * * * * 30 0 * * * * * * 5822 0 0 R 31 3082 * 3317 3416 * * 5592 * 1385 5491 * 3591 4646 * 4720 4481 4149 * * * 31 0 * * * * * * 5822 0 0 K 32 5563 * 2482 3281 * 4133 * * 1911 * 3288 3551 * 3692 3196 * * * * * 32 0 * * * * * * 5822 0 0 A 33 2656 * 2539 3560 * * * * 4512 4064 * 3509 * 4788 * 2190 4661 * * 3348 33 39 5214 * 1000 1000 * * 5793 1000 0 W 34 5214 * * * * * * * * 4661 * * * * 5309 5548 * * 173 * 34 0 * * * * * * 5793 0 0 P 35 * * 2889 5184 4788 * * 5122 3842 5166 * 3509 3566 4224 2969 4479 3080 2658 * * 35 0 * * * * * * 5793 0 0 S 36 4462 * 3975 2217 3455 * * * 5122 3251 * 3499 * 4098 5062 5886 * * * 1958 36 0 * * * * * * 5793 0 0 L 37 2602 * * * 5309 4382 * 4210 * 3546 * * * * * 5062 3300 1026 * * 37 0 * * * * * * 5793 0 0 Q 38 4511 * 4218 * * 3960 * 4513 4195 5027 5277 5534 * 2396 1328 5579 5201 * 5306 * 38 0 * * * * * * 5821 0 0 N 39 4670 * 4821 5069 3318 6078 * * 2645 * * 1617 * * 3646 3638 2896 * * * 39 0 * * * * * * 5821 0 0 D 40 3204 * 2785 3061 2886 5818 * 4440 * 3990 * * * 5069 * * 4525 4580 * 2003 40 0 * * * * * * 5821 0 0 L 41 * * * * * * * 1923 * 688 5000 * * * * * 5209 4124 * * 41 0 * * * * * * 5821 0 0 R 42 * * * * * * 2232 * * * * * * 3956 572 * 4316 * * * 42 0 * * * * * * 5821 0 0 L 43 5906 * * * * 1604 * 5633 5861 1428 * * * 4453 2590 4902 * * * * 43 0 * * * * * * 5821 0 0 R 44 5134 * * * * 5038 * * 1657 5257 * * 1604 3839 4125 3234 * * * 4821 44 0 * * * * * * 5821 0 0 A 45 2222 * * * * * * 5099 * 2250 2686 * * 3845 * 2544 5306 3006 * * 45 0 * * * * * * 5821 0 0 S 46 3124 * * 6104 * 1399 * * 5027 * * * * 3990 * 2991 2276 * * 3925 46 0 * * * * * * 5821 0 0 Y 47 * * 4241 2601 2382 * * 5634 * 4500 * 3925 5627 3567 * 5288 2847 * * 2388 47 0 * * * * * * 5844 0 0 L 48 5071 * * * * * * * * 577 2841 * * * * * 3434 3887 * * 48 0 * * * * * * 5844 0 0 R 49 * 5947 5049 * 5696 4019 * * 3273 3435 * * 6805 * 1176 3862 * * * 2677 49 0 * * * * * * 5844 0 0 Y 50 5316 * * * 3043 4885 * 3280 3001 3738 5182 * * 2461 3298 4183 * * * 2728 50 0 * * * * * * 5855 0 0 D 51 3965 * 638 3241 * * * * 5242 * * 5097 * 4016 * * 4594 5126 * * 51 0 * * * * * * 5855 0 0 L 52 * 5126 * * 3537 * * 4124 * 1057 1936 * * * * * 4265 4885 * * 52 0 * * * * * * 5855 0 0 K 53 4281 * 3511 * * 4634 * 5051 3721 3333 * 2009 * * 3554 3770 3234 * * 3293 53 0 * * * * * * 5855 0 0 T 54 3320 * * * * 3894 * 4562 3690 5786 * 2973 * * 2490 4594 2371 * * 2693 54 0 * * * * * * 5855 0 0 V 55 3343 * * * * 6807 * 2144 * 1244 * * * * * * * 2033 * * 55 42 5126 * 2000 415 * * 5855 1000 0 I 56 2773 * * 5395 5279 * * 1383 * * 3302 3079 * * * 3866 3668 4218 * * 56 35 5371 * 0 * * * 5855 1000 0 S 57 3146 * 5273 3923 5052 5316 * * 5439 * * 4162 5097 2270 3182 1811 5084 * * * 57 26 5806 * 0 * * * 5855 1000 0 A 58 2038 4494 5901 5900 * 5054 * 4667 * 5874 * 2896 * 4184 4109 2239 2909 * * * 58 164 4307 4131 0 * * * 5886 1513 0 K 59 3526 5730 * 4554 * * * * 1916 1246 * 5594 * * 5982 3697 * 4280 * * 59 0 * * * * * 0 5755 0 1715 P 60 5563 5755 4467 4394 * 3007 * 5377 * 1947 * * 1509 * * 3735 4904 * * * 60 0 * * * * 940 1062 5755 0 1715 K 61 3236 5612 4295 3886 * 3117 * * 2782 * * * 1689 4934 5678 3655 * 4254 * * 61 50 * 4865 * * * 0 5773 0 1000 D 62 2759 * 2713 2257 * 4710 * 5669 2562 * * 4542 * 3436 5170 3319 * * * * 62 26 * 5823 * * * 0 5692 0 1631 E 63 3446 * 1448 2069 * * 5330 * * 5271 5756 * * 3637 2884 * 5780 * * * 63 0 * * * * * 0 5717 0 2015 K 64 5243 * * 4803 * * * * 1710 * * * * 2226 1336 * * * 5479 * 64 0 * * * * 580 1595 5717 0 2015 K 65 3265 * 6008 4541 * * * * 1888 * * 4609 1877 2863 3726 * 4602 * * * 65 36 * 5356 * * * 0 5910 0 1000 S 66 * * 3401 1532 * 5409 * * 3363 4520 5393 4895 3428 4206 * 3433 3572 6150 * * 66 64 4523 * 0 * * 0 5859 1390 1173 L 67 1866 * * 5634 4049 5813 * 4275 4802 1777 5006 * 5070 4686 * * 5331 5270 * 3358 67 0 * * * * 1000 1000 5859 0 1173 Q 68 4098 * 4116 4929 * * 5458 4415 2316 3582 * * * 5999 2382 * 2559 3060 * * 68 0 * * * * * 0 5894 0 1000 E 69 2998 * 2748 3490 * 5422 * * 1949 3710 * 5278 * 4303 3201 4564 4297 * * * 69 29 5653 * 0 * * 0 5894 1000 1000 L 70 2982 * * 4887 * * * 4331 5310 570 * * * * 5691 * 4570 5083 * * 70 0 * * * * 0 * 5894 0 1000 T 71 910 * * * 5026 * * 5961 * 4988 * 3648 * * * 3793 3233 * * 2930 71 0 * * * * * * 5887 0 0 S 72 3457 * * 5243 * 5239 * * 1895 6113 * 1942 * 5348 2827 3056 5219 * * * 72 0 * * * * * * 5887 0 0 K 73 2727 * 2996 2081 * * * * 1876 5961 * 4928 * 5678 3506 5790 5730 5533 * * 73 0 * * * * * * 5887 0 0 L 74 * * * 4988 1852 * * 4267 * 899 5016 * * * * * * 3786 * * 74 0 * * * * * * 5887 0 0 F 75 4693 * * * 753 5016 * * 3497 3507 * * * * * * 5107 3387 * 4791 75 46 4988 * 0 * * * 5887 1000 0 S 76 5932 * 2046 2619 * 4075 * * 4308 * * 2682 * 3625 4021 5155 4685 * * 3273 76 0 * * * * * * 5887 0 0 S 77 3025 * 3083 * 3545 * 2949 * 4286 * * 2314 * 5026 5024 2374 4743 * * * 77 0 * * * * * * 5887 0 0 I 78 * * * * 2893 * * 2676 * 1318 2367 * * * * * * 3134 * * 78 0 * * * * * * 5887 0 0 D 79 3654 * 2807 1243 * * * 5348 * 3737 * 4456 * 5946 * 4924 2943 5021 * * 79 0 * * * * * * 5887 0 0 N 80 3561 * 2659 1836 * * * * 2433 * * 3790 * 4543 3159 4592 5440 * * * 80 0 * * * * * * 5887 0 0 L 81 4692 * * * 4191 * * 3211 * 590 3943 * * * * * 5026 4702 * * 81 0 * * * * * * 5887 0 0 D 82 * * 484 4712 * 3670 * * * * * * * 4325 6054 4187 4374 * * * 82 0 * * * * * * 5887 0 0 H 83 3730 * 2810 3053 2480 5467 4581 * 5219 3943 * 5408 * 3618 5079 5312 5292 * * 2828 83 0 * * * * * * 5887 0 0 A 84 348 * * * 5079 5107 * * * * * * * 4692 * 4289 * * * 3921 84 22 6054 * 1000 1000 * * 5887 1000 0 A 85 861 5219 * * * * * 4791 * 4007 5247 * * * * 4040 * 2076 * * 85 0 * * * * * * 5887 0 0 K 86 3316 * 4276 3888 * 5219 * * 2927 * * * * 5835 1279 4201 3160 * * 5247 86 0 * * * * * * 5887 0 0 I 87 3561 * 2807 3343 * * * 6030 3150 2994 4523 4739 * 4090 5694 2966 2906 * * * 87 0 * * * * * * 5887 0 0 K 88 4659 * 5107 * * 3016 * * 1196 * 6054 5818 3387 4111 2698 * * * * 5016 88 0 * * * * * * 5887 0 0 S 89 * * 1290 * * * * * 3828 * * 1845 * * 5312 2204 * * * * 89 0 * * * * * * 5887 0 0 P 90 5776 * 4300 3516 * 2606 * 5393 5270 3617 * * 4838 3502 5835 4052 4052 1945 * 5202 90 0 * * * * * * 5859 0 0 T 91 4292 * 3384 4391 * 5202 * * 4088 6006 * * 2302 5835 5331 2496 2441 * * 3358 91 0 * * * * * * 5859 0 0 E 92 5147 * 3957 2186 5317 * * * 3675 2575 * * * 2827 2700 4802 5813 3880 * * 92 0 * * * * * * 5859 0 0 A 93 1169 4686 * * * 5147 * 4300 * 4105 5393 * * * * 3358 3591 2514 * * 93 0 * * * * * * 5859 0 0 E 94 3356 * * 2680 4988 5186 * * 3336 2612 * * * 2426 4497 5423 5692 * 4206 3358 94 0 * * * * * * 5859 0 0 K 95 3187 * * 2996 * 5400 * 4913 2008 2607 * 5028 * 4653 3720 3080 5029 * * * 95 0 * * * * * * 5769 0 0 Y 96 3061 2785 * 4022 * 5183 * * 4153 3902 * 5028 * 3466 4508 3184 * * * 2013 96 0 * * * * * * 5769 0 0 Y 97 * * * * 3522 * * * * 4868 * * * 4956 3902 4718 * * * 431 97 0 * * * * * * 5769 0 0 G 98 2397 * 5677 2553 * 3249 * 5499 3798 * * * * 2534 3596 2922 4890 * * * 98 0 * * * * * * 5743 0 0 Q 99 2321 * 2314 2307 * * * * 2135 * * 2915 * 4778 * * * * * * 99 0 * * * * * * 5734 0 0 T 100 1920 * * * 4901 * * 3273 * 4894 5697 * * * * 3705 1353 3687 * * 100 0 * * * * * * 5670 0 0 V 101 2777 * * 4781 * * * 2711 2726 2575 4873 * * * 4856 * * 1849 * * 101 0 * * * * * * 5670 0 0 S 102 2134 * 4732 * 5523 4901 * 4330 2341 * * * * 3326 5484 2835 4189 3117 * * 102 0 * * * * * * 5670 0 0 N 103 1733 * 2235 * * * * 3685 * 3053 * 5635 * * * 2621 3239 * * * 103 0 * * * * * * 5670 0 0 I 104 * * * * 2175 * * 2807 * 841 * * * * * * * 5324 * 4250 104 0 * * * * * * 5670 0 0 N 105 * * 909 4901 * 5930 * * 4873 * * 3034 * 2915 3439 4781 * * * * 105 0 * * * * * * 5670 0 0 E 106 2708 * 2015 1812 * * 5444 * * 4965 * 3577 * 3195 * 3902 * * * * 106 0 * * * * * * 5431 0 0 V 107 * * * * 2721 * * 2500 * 3094 * * * * * * 4591 1233 3512 * 107 0 * * * * * * 5369 0 0 L 108 * * * * 3771 * * * * 1009 2640 * * * 4485 * * 2524 * 4291 108 0 * * * * * * 5342 0 0 A 109 1046 * * * * * * * * * * * 4981 4245 * 1497 3702 * * * 109 0 * * * * * * 5279 0 0 K 110 4101 * * 5045 4495 * * 3131 1999 * * * * * 2405 3091 * 3376 * 3317 110 0 * * * * * * 5099 0 0 L 111 * * * * * * * 1701 * 1617 3042 * * * * * * 2030 * * 111 0 * * * * * * 5017 0 0 G 112 * * * * * 0 * * * * * * * * * * * * * * 112 0 * * 0 * * * 2822 0 0 //