HHsearch 1.5 NAME c1kqiA_ FAM FILE c1kqiA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1kqiA_.a3m DATE Thu Jan 10 03:15:26 2013 LENG 38 match states, 38 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.4823 2.6697 SEQ >ss_dssp CCBCTTEECCSSSSCCBCTTCEEECCSSSCSEEECTTC >sa_dssp EDCDDDCECDEEEECECCEECECAEEEEDEDBACDEEE >ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC >ss_conf 93100235687688643410013154555215675899 >Consensus kclaeaadcspwsgdscckpylcsciffypcscrpkgw >c1kqiA_ KCLAEAADCSPWSGDSCCKPYLCSCIFFYPCSCRPKGW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1000 0 0 A 4 0 * * * * * * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 E 5 * * * 0 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 D 8 * * 0 * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 C 9 * 0 * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 S 10 * * * * * * * * * * * * * * * 0 * * * * 10 0 * * * * * * 1000 0 0 P 11 * * * * * * * * * * * * 0 * * * * * * * 11 0 * * * * * * 1000 0 0 W 12 * * * * * * * * * * * * * * * * * * 0 * 12 0 * * * * * * 1000 0 0 S 13 * * * * * * * * * * * * * * * 0 * * * * 13 0 * * * * * * 1000 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 D 15 * * 0 * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 S 16 * * * * * * * * * * * * * * * 0 * * * * 16 0 * * * * * * 1000 0 0 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 1000 0 0 C 18 * 0 * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 K 19 * * * * * * * * 0 * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 P 20 * * * * * * * * * * * * 0 * * * * * * * 20 0 * * * * * * 1000 0 0 Y 21 * * * * * * * * * * * * * * * * * * * 0 21 0 * * * * * * 1000 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1000 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 S 24 * * * * * * * * * * * * * * * 0 * * * * 24 0 * * * * * * 1000 0 0 C 25 * 0 * * * * * * * * * * * * * * * * * * 25 0 * * * * * * 1000 0 0 I 26 * * * * * * * 0 * * * * * * * * * * * * 26 0 * * * * * * 1000 0 0 F 27 * * * * 0 * * * * * * * * * * * * * * * 27 0 * * * * * * 1000 0 0 F 28 * * * * 0 * * * * * * * * * * * * * * * 28 0 * * * * * * 1000 0 0 Y 29 * * * * * * * * * * * * * * * * * * * 0 29 0 * * * * * * 1000 0 0 P 30 * * * * * * * * * * * * 0 * * * * * * * 30 0 * * * * * * 1000 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1000 0 0 S 32 * * * * * * * * * * * * * * * 0 * * * * 32 0 * * * * * * 1000 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 1000 0 0 R 34 * * * * * * * * * * * * * * 0 * * * * * 34 0 * * * * * * 1000 0 0 P 35 * * * * * * * * * * * * 0 * * * * * * * 35 0 * * * * * * 1000 0 0 K 36 * * * * * * * * 0 * * * * * * * * * * * 36 0 * * * * * * 1000 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 1000 0 0 W 38 * * * * * * * * * * * * * * * * * * 0 * 38 0 * * 0 * * * 1000 0 0 //