HHsearch 1.5
NAME  c1kalA_
FAM   
FILE  c1kalA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c1kalA_.a3m 
DATE  Wed Jan  9 16:19:36 2013
LENG  29 match states, 29 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.5315  4.3256 
SEQ
>ss_dssp
CTTSCEETTEECSSCCCTTSCCSCTTCBC
>sa_dssp
DEBDABEEEEDECEDEBEEDECEDEECDC
>ss_pred
CCCCCCCCCCCCCCCCEECCCCCCCCCCC
>ss_conf
97622237874333301344058887459
>Consensus
swpictrnglpxcgetcxggtcntpgctc
>c1kalA_
SWPVCTRNGLPVCGETCVGGTCNTPGCTC
>UniRef50_P58455(89-142:158) Kalata-B3 n=5 Tax=core eudicotyledons RepID=KAB3_OLDAF   E=0.0005 s/c=0.84 id=87% cov=103%
SWPICTRNglpkragvkssettltmflkemqlkGLPTCGETCFGGTCNTPGCTC
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
S 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	1
       0	*	*	*	*	*	*	1074	0	0	

W 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	2
       0	*	*	*	*	*	*	1074	0	0	

P 3    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1074	0	0	

V 4    *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	4
       0	*	*	*	*	*	*	1074	0	0	

C 5    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1074	0	0	

T 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	6
       0	*	*	*	*	*	*	1074	0	0	

R 7    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	7
       0	*	*	*	*	*	*	1074	0	0	

N 8    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	8
       1000	1000	*	4644	59	*	*	1074	1000	0	

G 9    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1074	0	0	

L 10   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1074	0	0	

P 11   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1074	0	0	

V 12   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	12
       0	*	*	*	*	*	*	1074	0	0	

C 13   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1074	0	0	

G 14   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1074	0	0	

E 15   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1074	0	0	

T 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	16
       0	*	*	*	*	*	*	1074	0	0	

C 17   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1074	0	0	

V 18   *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	18
       0	*	*	*	*	*	*	1074	0	0	

G 19   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1074	0	0	

G 20   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1074	0	0	

T 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	21
       0	*	*	*	*	*	*	1074	0	0	

C 22   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1074	0	0	

N 23   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1074	0	0	

T 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	24
       0	*	*	*	*	*	*	1074	0	0	

P 25   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1074	0	0	

G 26   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1074	0	0	

C 27   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1074	0	0	

T 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	28
       0	*	*	*	*	*	*	1074	0	0	

C 29   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	0	*	*	*	1074	0	0	

//