HHsearch 1.5 NAME c1jniA_ FAM FILE c1jniA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1jniA_.a3m DATE Tue Mar 9 21:24:15 2010 LENG 62 match states, 62 columns in multiple alignment FILT 50 out of 54 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4698 2.8275 SEQ >ss_dssp CCCCCSSCCTTCCEETTEETTHHHHSTTTHHHHCCCCCCGGGTCCTTSCCCCSCCGGGTCCC >sa_dssp EDEECEDECEEDDCDDEDBDCCEDCBCEDBDEDECEDCDEDCDDDDEDCEDCDCDCDEDCEE >ss_pred CCCCCCCCCCCCEECHHCCCCCCCCCHHHHHHCCCCCCCHHHEECCCCCCCCEEEEEECCCC >ss_conf 97757721368384331163022268545554088507866654288971671330101149 >Consensus QPPlIPHxixgyxIxxxxNxClxCHxxxxaxxxxAxxisxtHfxDrxgxsxrRYfCtqCHVx >c1jniA_ QPPMVPHSVANYQVTKNVNQCLNCHSPENSRLSGATRISPTHFMDRDGKVPRRYFCLQCHVS >UniRef50_D0U4E1(98-163:181) Periplasmic nitrate reductase subunit NapB n=1 Tax=uncultured SUP05 cluster bacterium RepID=D0U4E1_9GAMM E=3e-22 s/c=1.61 id=50% cov=100% QPPLIPHKTKGMRITMKKNKCLSCHSNENWRDADAVKMTASHFMTRSNKrlkevSPRRYFCTQCHV- >UniRef50_Q13I14(64-130:159) Periplasmic nitrate reductase subunit NapB n=2 Tax=Burkholderia RepID=Q13I14_BURXL E=4e-22 s/c=1.57 id=48% cov=102% QPPTIPHKIDGYQLDRNANRCLACHARSRAAESGAVPVAVSHYTDRTGEtlehiSPRRYFCTQCHVT >UniRef50_Q4HRN5(69-137:173) NapB periplasmic nitrate reductase n=2 Tax=Campylobacter RepID=Q4HRN5_CAMUP E=5e-20 s/c=1.43 id=37% cov=100% -PPLIPHNLDGMlPITKESNSCLTCHDKAIAQDVGAIAAPASHYYDFWKNKPTgdviseiRYNCTQCHVA >UniRef50_A1RG48(66-127:143) Periplasmic nitrate reductase subunit NapB n=20 Tax=Shewanella RepID=A1RG48_SHESW E=1e-19 s/c=1.58 id=42% cov=100% QPPLIPHK-DDYKITLDKNGCLSCHSWEKAERMKATPVAKSHVIDDKGNLnGQNYFCTQCHVA >UniRef50_Q2W3T4(63-128:151) Nitrate reductase cytochrome c-type subunit n=5 Tax=Proteobacteria RepID=Q2W3T4_MAGSA E=4e-19 s/c=1.45 id=48% cov=100% QPPLVPHTTDKYEIDLKVNQCLRCHEWPYSDQEKAPKISDLHYLDRNGVRQdvvngNRYFCKQCHV- >UniRef50_C5EY43(70-138:174) NapB periplasmic nitrate reductase n=2 Tax=Helicobacter RepID=C5EY43_9HELI E=1e-16 s/c=1.27 id=34% cov=100% -PPMISHNLDGMlPITRDNNACTSCHLPEIAEAVAATPMPKSHFYnfrenkNLDGQMDeNRFNCVICHTT >UniRef50_A7BUA2(64-122:141) Periplasmic nitrate reductase small subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BUA2_9GAMM E=7e-13 s/c=1.27 id=37% cov=87% QAALIPHLIEGQRIDLESNQCMDsCH-------TILKKPSASHYEDRDGNIldeidSRRYICTSCH-- >UniRef50_A9I7N5(66-132:151) Periplasmic nitrate reductase, cytochrome c-type protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I7N5_BORPD E=8e-21 s/c=1.51 id=49% cov=102% QPPLVPHASSNYPVTLKFNKCLDCHAWARAQATNSPKISITHFRDAQGRelssvSPSRYFCQQCHVT >UniRef50_A8UYP3(73-144:180) Periplasmic nitrate reductase small subunit (Cytochrome C-type protein) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYP3_9AQUI E=1e-15 s/c=1.17 id=42% cov=100% -PPQIPHSVEGLiPIKPGQNACLGCHMPDVAKSVGATPIPKTHialdLFTKGGKKkelkidPARYQCVMCHAA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 2750 0 0 P 2 3774 * * * * * * * * * * * 110 * * * * * * * 2 0 * * * * * * 3270 0 0 P 3 4463 * * * * * * * * * * * 67 * * * * * * * 3 0 * * * * * * 3270 0 0 M 4 * * * * 5353 * * 5148 * 1029 2161 * 5998 4586 * * 4026 3123 * * 4 0 * * * * * * 3270 0 0 V 5 * * * * * * * 216 * * * * * * * * * 2848 * * 5 0 * * * * * * 3270 0 0 P 6 * * * * * * * * * * * * 79 * * 4233 * * * * 6 0 * * * * * * 3270 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 3270 0 0 S 8 3628 * 2687 * 5169 * * * 2377 4463 * 3506 * * 5877 1707 3526 * * * 8 45 * 5031 * * * * 3270 0 0 V 9 * * * * * * * 1437 * 2937 * * * * * 5224 2109 2050 * * 9 0 * * * * 0 * 3245 0 1000 A 10 5064 * 1728 1283 * * * * 4093 * * * * * 3608 4435 5998 4192 * * 10 0 * * * * * * 3270 0 0 N 11 5436 * 3943 * * 552 * * 3678 * * 3133 * 5628 * 5834 * * * * 11 81 4197 * 0 * * * 3270 1432 0 Y 12 * * * * 5345 * * * * 2847 2204 * * 4463 * * * * * 801 12 480 1820 * 0 * * * 3270 2421 0 Q 13 * * * 2479 * * * * 4098 * * 5849 1654 1640 3237 * * * * * 13 0 * * * * * * 3270 0 0 V 14 * * * * * * * 607 * 3130 * * * * * * * 2124 * * 14 0 * * * * * * 3270 0 0 T 15 * * 1792 5510 * * * * 4312 * * 3170 * * * 3496 1187 * * * 15 0 * * * * * * 3270 0 0 K 16 * * * * * * * 4048 1964 1465 4280 5699 5229 4863 4100 5400 3999 4477 * * 16 0 * * * * * * 3270 0 0 N 17 * * 2530 2254 * 5229 * * 2260 * * 1609 * 5899 5628 5877 * * * * 17 0 * * * * * * 3270 0 0 V 18 3054 * 5400 * 3014 4255 * 6255 4136 4600 * 2178 * 4415 * 2999 4999 2951 * 6055 18 0 * * * * * * 3270 0 0 N 19 * * * * * * * * * * * 0 * * * * * * * * 19 0 * * * * * * 3270 0 0 Q 20 2997 * * 5312 * 5031 * 5551 1677 * 3817 * * 2243 2728 4269 * * * * 20 0 * * * * * * 3270 0 0 C 21 * 0 * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 3270 0 0 L 22 * * * * * * * 4444 * 704 2048 * * * * * 4308 4377 * * 22 0 * * * * * * 3270 0 0 N 23 3169 * 2375 5843 6123 3166 * * * * 6160 4761 * 4835 4926 2003 2437 * * * 23 67 4463 * 0 * * * 3270 1000 0 C 24 * 0 * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 3270 0 0 H 25 * * * * * * 0 * * * * * * * * * * * * * 25 67 * 4463 * * * * 3270 0 0 S 26 2779 * 2963 4067 * 5757 * * 3985 4262 2500 * * * 5790 1680 * 5282 * * 26 51 * 4851 * * * 0 3213 0 1000 P 27 4352 * * * 5579 * * * 4387 * * 5135 1579 5463 2154 * * 4752 2091 * 27 0 * * * * * 0 3189 0 1326 E 28 2617 * 3987 1527 * * 5741 * 4278 5431 * 5801 4869 3436 5208 3860 3426 * * * 28 0 * * * * * 0 3189 0 1326 N 29 4650 * * * 4142 * * 3544 3358 * * 2715 * * 2374 5711 4361 2079 * 3824 29 0 * * * * * 0 3189 0 1326 S 30 948 * * * * * 5972 6111 * * * * * * * 2954 2835 5002 5135 3031 30 0 * * * * * 0 3189 0 1326 R 31 4943 * 4869 1724 * 3019 * * 1916 * * * 5823 3316 3617 5579 * 5529 * * 31 0 * * * * * 0 3189 0 1326 L 32 2794 * 2610 2316 * 3804 * 4912 3965 4861 * * * 3500 4281 3392 4766 5960 * * 32 0 * * * * 948 1054 3189 0 1326 S 33 3901 * * 4911 * * * 5328 4340 5423 2693 * * * 5270 1985 2496 2382 * * 33 0 * * * * * 0 3258 0 1000 G 34 4430 * 5238 * * 1028 * 4273 2523 * * 4419 * 2607 * * * * * * 34 0 * * * * * 0 3258 0 1000 A 35 229 * * * * * * * * 4273 * * * * * 5242 4457 5423 * * 35 0 * * * * 0 * 3258 0 1000 T 36 * * * * * * * 3917 3774 * * * 1459 * * * 1239 3769 * * 36 0 * * * * * * 3270 0 0 R 37 5198 * * * * * * * 1881 * 2514 * 1560 * 3530 5352 3716 * * * 37 0 * * * * * * 3270 0 0 I 38 5198 * * * * * * 1009 * 3133 4189 * 4463 * * * * 1933 * * 38 0 * * * * * * 3270 0 0 S 39 3973 * * * * 5345 * * * * * * 1515 * * 901 5249 * * * 39 0 * * * * * * 3270 0 0 P 40 3019 * 4120 5908 * * * 3490 2204 4349 4372 * 2429 * * * * 2227 * * 40 0 * * * * * * 3270 0 0 T 41 * * * * * * * * * 4926 * * * * * 1052 1044 * * * 41 0 * * * * * * 3270 0 0 H 42 * * * * * * 0 * * * * * * * * * * * * * 42 39 5229 * 2000 415 * * 3270 1000 0 F 43 * * * * 923 * * * * 2965 * * * * * * * 5031 * 1671 43 69 4424 * 2797 224 * * 3270 1405 0 M 44 5436 * * 3953 5229 * * 4456 3084 3140 2265 * * 3545 4025 * 3868 4736 * 2761 44 79 4237 * 2585 263 * * 3270 1303 0 D 45 * * 370 * * * * * * * * 3511 * * * * 2854 * * * 45 174 3137 * 3762 110 * * 3270 1817 0 R 46 5255 * 5031 5504 5198 * * 5353 2968 4233 5543 * * * 673 4645 * * * * 46 0 * * * * * * 3270 0 0 D 47 5913 * 1345 2658 * 3772 * * 5031 * * 3221 * 5255 4445 4323 4299 * 5198 5628 47 0 * * * * * * 3270 0 0 G 48 * * 3774 * * 416 * * 5198 * 5551 3220 * * * * 5543 * * * 48 0 * * * * * * 3270 0 0 K 49 6011 * * 5987 * 6170 * 4721 1877 4355 5699 2140 * 2118 3915 5628 * 4926 * * 49 1114 894 * 2281 332 * * 3270 2702 0 V 50 3525 * * * 5834 * * 4463 3206 3699 5130 * * 5400 4926 1106 4596 3758 * * 50 416 1997 * 2585 263 * * 3270 2641 0 P 51 5030 * 3337 5510 * 3317 * * * * * 4280 999 3567 * 3396 5877 * * * 51 91 4025 * 1555 600 * * 3270 1643 0 R 52 3425 * * 4348 * 3740 * * * * * 4025 * 3803 954 3587 4312 * * * 52 110 3763 * 3328 151 * * 3270 1644 0 R 53 * * * * * * * * * 5169 * 5031 * * 87 * * * * * 53 0 * * * * * * 3270 0 0 Y 54 * * * * 2465 * * * * * * * * * * * * * 4372 376 54 0 * * * * * * 3270 0 0 F 55 * * * * 697 * * 4463 * * * 1932 * 5229 * * * 4353 * * 55 0 * * * * * * 3270 0 0 C 56 * 0 * * * * * * * * * * * * * * * * * * 56 0 * * * * * * 3270 0 0 L 57 * * * * * * * * 4926 3117 5001 3996 * 4533 * 4008 915 3031 * * 57 0 * * * * * * 3270 0 0 Q 58 3501 * * * * * * 5130 * 4327 5229 * * 489 * 4463 5353 5352 * * 58 0 * * * * * * 3270 0 0 C 59 * 0 * * * * * * * * * * * * * * * * * * 59 0 * * * * * * 3270 0 0 H 60 * * * * * * 0 * * * * * * * * * * * * * 60 0 * * * * * * 3270 0 0 V 61 4443 * * * * * * * * * * * * * * * 4426 140 * * 61 0 * * * * * * 3103 0 0 S 62 1325 * * * * * * * * * * * * * * 2430 1268 * * * 62 0 * * 0 * * * 2765 0 0 //