HHsearch 1.5 NAME c1j6qA_ FAM FILE c1j6qA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1j6qA_.a3m DATE Wed Mar 10 13:58:17 2010 LENG 100 match states, 100 columns in multiple alignment FILT 105 out of 123 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4251 -0.1445 SEQ >ss_dssp CCCCCEECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECCC >sa_dssp EEECDDCDAADACEDCADEDEEBEDEDDBDABCDBCEECBEEDEEDEDBDABACCEEEBDBEADBEDEBDDEBEDECCABABBEADEEBCBCADCBEDEE >ss_pred CCCEEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCHHCCCEEEEEEEECCCCEEEEEEEEECC >ss_conf 9301452798972353333443347866999769826817985998639999983899879999748998603249669999998899959972888609 >Consensus snxxyfxtpseixxxxxxxxxxxxxxxxvrvgGxVxxgSixxxxxxxxxxFxitDxxxxxixVxYxGxxPdxFxegxxVVxxGxxxxxgxfxAxxiLaKH >c1j6qA_ SNLNLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAKH >UniRef50_C9LX59(23-111:124) Putative cytochrome c-type biogenesis protein CcmE n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LX59_9FIRM E=0.0001 s/c=0.53 id=27% cov=83% ----------------VDIAEARSAHGSVQVKGLLDPDAPAPAQKGKDFVFGLVDESGEKMEVHYHGTEPDQFRSAHHIVAVGSYK-DGAFEADRLLIK- >UniRef50_C7M2R0(51-141:162) CcmE/CycJ protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2R0_ACIFD E=8e-12 s/c=0.78 id=24% cov=92% SALEYYLTVPQALAKRATL-----AGQTFRMEGIVVPGSIQSTPEGVDFALR---YDRAVARVVEIGNPPQLFQPSIPVVVQGHF-EGSTFVSNLIMVKH >UniRef50_C1SLI4(28-122:134) Cytochrome c-type biogenesis protein CcmE n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SLI4_9BACT E=6e-18 s/c=0.97 id=26% cov=95% SESVYYLEVSEVLHNPEKFNK-----KGMRVSGDVVTGTIVKDFKKQYLEFDIADTSGQAMKVIYNGIIPDTFKEDIQVIIEGRFDQDaDVFNAATVLTK - >UniRef50_D2QN11(47-137:159) Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QN11_9SPHI E=1e-06 s/c=0.60 id=24% cov=84% ---------------KAEQMKKEGDDKMIHVVGKVQKDAQGRITDMLynpaidpnHFEFTLIDNENRAQKVVFNSPKPQDFERSEQIVIIGAMQGD-HFQ CNKILLK- >UniRef50_A8VWW5(32-120:146) Putative uncharacterized protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VWW5_9BACI E=1e-12 s/c=0.83 id=24% cov=87% ---------SEMKIADINANMDTLEGRHLTTEGMLVHDSVGWDADAIELTFDI-EYEGHVLSVFFNGVRPDNFTDDVYIIVRGYLNEEGTLEAEAV---- >UniRef50_A0CI93(52-153:181) Chromosome undetermined scaffold_19, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CI93_PARTE E=4e-08 s/c=0.58 id=20% cov=80% --ISHFFVDKQVIfpVEDYLKNDKIKENQHYSIAGIIKPGTIEIKRGTLDVKFILT-NFDDDITVIYRGETKYEFKEGETIVLT---------------- -- >UniRef50_Q12WM0(31-117:126) Cytochrome c-type biogenesis protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12WM0_METBU E=5e-10 s/c=0.75 id=23% cov=88% -----YLMVSDITTSPQDH-----VGQKVSTMGLVKNGTLSISPEMVSFTLVDAEDKEHEIDIEYTADLPANIVEGNSISLTGTMISESKIEAEQIV--- >UniRef50_Q3IRX9(32-112:152) Cytochrome c-type biogenesis protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IRX9_NATPD E=4e-07 s/c=0.69 id=27% cov=82% -----FVTPTDLEEDD------DYQNELVKLEGQVTD-----LEEGPPIAFAVDDG-NYTKAVTYDGEMPETMSEGRIVVAEGHFDGE-TLVADDLTVR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 4120 * * * * * * * * * * 2537 * * * 377 * * * * 1 0 * * * * * * 3844 0 0 N 2 4165 * 5123 4834 * * * * * * * 252 * * * * * * * 4613 2 0 * * * * * * 4684 0 0 L 3 4642 * * * * * * 1512 4987 1920 4674 * * * * 3462 4716 2780 * * 3 0 * * * * * * 4959 0 0 N 4 4490 * 4516 4270 * * * 5916 * 6237 6467 2602 * * * 1851 6147 1463 * * 4 0 * * * * * * 4991 0 0 L 5 * * * * 2093 * 4037 * * 2774 * * 4301 * * * * * * 978 5 0 * * * * * * 5064 0 0 F 6 * * * * 630 * * * * 5236 * * * * * 5947 * * * 1684 6 0 * * * * * * 5275 0 0 Y 7 * 6587 * * 3347 * 6492 6299 * 2099 4754 * * 6078 4058 4240 5781 3014 5641 1703 7 0 * * * * * * 5364 0 0 T 8 5126 * 6614 5765 * 6398 * * 6385 4913 4074 4325 5507 * * 2300 957 4788 * * 8 0 * * * * * * 5364 0 0 P 9 * * 5256 * * * * 4462 * 5917 * * 558 * * * * 2103 * * 9 13 * 6773 * * * * 5364 0 0 S 10 5687 * 5638 6214 * 5309 * * 5319 * * 6675 5697 4873 * 731 2115 * * * 10 17 * 6431 * * * 0 5447 0 1000 E 11 6601 * 3077 667 * * * * 4511 * 6890 * * 2770 * 5981 * 5223 * * 11 30 5604 * 2322 322 * 0 5447 1000 1480 I 12 2730 * * * * * * 2076 * 2256 4643 * * * * * * 1714 * 4109 12 105 * 3826 * * * 0 5447 0 1480 V 13 2475 * * 5961 6197 * 6705 4549 4356 2331 4246 4874 * 3099 * * 3300 2703 * 4966 13 94 5218 4797 1000 1000 * 0 5357 1000 2820 N 14 2317 * 4661 2501 * 3963 5703 5353 4344 * * 5044 * 3482 3322 3971 3577 4090 * * 14 120 * 3643 * * * 0 5298 0 3232 G 15 4065 * 3159 2969 6198 2407 6668 * 2654 * 4454 3679 * 3241 5404 3706 * * * * 15 98 * 3925 * * 3463 137 5244 0 3763 K 16 3752 * 2649 3552 5941 3285 3819 * 3042 * * 5094 3224 5419 3500 3866 4911 5638 * * 16 122 * 3626 * * 3847 104 5424 0 3911 T 17 1687 * 4774 4650 * 6117 * 3729 5915 3736 * 4795 * 3302 * 5975 3967 2405 * 5293 17 136 * 3475 * * * 0 5557 0 4280 D 18 3827 * 2561 2313 * * * 6125 2883 3859 * 4275 2803 4850 * 4650 5285 4474 * * 18 118 * 3668 * * 3003 192 5570 0 4463 T 19 2868 * * * 4040 5731 4920 4262 3433 3167 * 4132 4118 3923 4226 6362 3186 4871 * 3263 19 406 * 2028 * * 3222 163 5643 0 4314 G 20 3111 * 3097 4374 * 3878 5724 5351 5667 5194 4025 2770 3620 5714 4996 3377 * 5457 * 3295 20 204 * 2924 * * 2856 214 5721 0 4607 V 21 3882 * 3836 3226 * 4179 4347 * 3920 5374 3610 * 3593 5549 3634 3724 2954 3485 * * 21 145 * 3389 * * 3115 177 5728 0 4596 K 22 3257 * 3103 * 5026 4729 5558 5346 2177 4276 * 5061 2423 4387 4695 * 5432 4338 * 5914 22 104 * 3851 * * 2341 317 5679 0 4692 P 23 3399 * 4295 2631 * 5591 * 5121 * * 5729 * 2080 5604 3538 2850 4149 3536 * * 23 167 5066 3656 2000 415 3010 191 5647 1000 4552 E 24 2671 * * 3242 * 3371 * 5269 4421 3038 * 3958 4138 3738 5844 4695 * 4467 * 2747 24 22 * 6045 * * 1356 715 5687 0 4646 A 25 2315 * 4528 3414 * 4171 5452 2962 5157 5660 * 4103 6037 2981 * 4114 5880 3134 * 5741 25 0 * * * * 1161 855 5941 0 4034 G 26 * * 2771 4146 * 1157 5742 * 6125 5094 * 3102 * 3711 5669 4539 5016 * * * 26 20 * 6157 * * 1890 454 5605 0 3600 Q 27 5178 * 6110 4330 * 4721 * * 2054 * 5716 5140 6617 2702 1571 4459 4793 * * * 27 0 * * * * 2220 349 5648 0 3223 R 28 6085 * 6637 3311 * 6298 3886 * 2649 3446 5696 4002 4096 5069 2521 3695 3264 5839 * * 28 11 * 7013 * * 225 2791 5656 0 2982 I 29 6180 * * * 2584 * * 2164 * 2669 5306 * * * * * 6551 1360 * 6233 29 0 * * * * 942 1061 5640 0 1557 R 30 * * * 6129 * * 4437 * 3598 * * 6229 * 2533 676 4994 6200 * * * 30 0 * * * * * 0 5667 0 1000 V 31 6458 * * * * 6743 * 2408 * 2080 4290 5643 * * * * 4949 1149 * * 31 0 * * * * * 0 5829 0 1000 G 32 4092 * * 3685 3888 1064 5249 * 3860 5114 4340 5104 * * 5987 5038 4246 5943 * * 32 0 * * * * * 0 5829 0 1000 G 33 5112 * * * * 73 * * * * * * * 5607 * * * * * * 33 14 * 6690 * * * 0 5835 0 1000 M 34 * 6714 4602 5231 5097 * * 3687 5324 2167 2384 4083 * 5098 5379 4571 3728 4220 5097 3964 34 0 * * * * 852 1165 5829 0 1547 V 35 5291 * * * * * * 3442 * 3356 * * 6340 * * * * 407 5776 * 35 36 * 5347 * * 0 * 5835 0 1000 T 36 3662 * 5989 2436 * 6676 * 5783 2325 3961 7208 * 6639 3344 5590 * 4687 1977 * * 36 19 6228 * 0 * * 0 5805 1000 1569 V 37 2915 * 3873 2561 * 6527 4898 * 2487 5993 * 5072 2201 4621 7079 5842 5587 4112 * * 37 70 * 4410 * * 876 1136 5805 0 1569 G 38 * * 2523 4310 * 591 6901 * 6487 * * 4661 * 6420 4605 * * * * * 38 0 * * * * * 0 5793 0 2536 S 39 4564 * 5466 * * 5367 * * 5781 * * * 5610 * * 694 1977 * * * 39 67 * 4457 * * 272 2539 5800 0 2536 M 40 * * * * 5392 5777 * 1663 * 2017 5187 * 5247 5021 * * 5013 1840 * * 40 62 6004 5241 0 * 1207 819 5798 1000 2586 V 41 4089 * 5374 2829 6428 4298 5940 3976 2912 * 4671 4732 * 2844 4203 4150 5311 2743 * * 41 51 * 4840 * * 779 1260 5773 0 2647 R 42 6200 * * 5456 * * 4330 4064 3252 * 5172 * 4730 5792 1290 6110 5237 * 3714 2841 42 120 * 3644 * * 1000 1000 5762 0 2600 D 43 3128 * 2603 3918 6233 3924 4140 3700 5541 5394 * 4031 5537 4080 4530 3344 5448 5589 * 3848 43 71 * 4389 * * 873 1139 5787 0 3211 P 44 3243 * 2601 4145 6312 2604 * 5390 5199 * 5503 7227 2282 4201 4031 4056 5911 5787 * * 44 79 4814 5824 1163 854 651 1461 5772 1849 3163 N 45 4112 * 1608 1980 * 3081 * * 4236 * * 4875 5287 3996 * 5064 4748 * * * 45 53 * 4804 * * 338 2261 5855 0 2397 S 46 3533 5955 4827 7056 * 1375 6635 * 6399 4932 4833 4114 5699 5237 4536 2841 3683 6013 * * 46 91 * 4031 * * 1380 700 5850 0 2551 L 47 4701 6349 4465 4262 6531 3481 * 5031 4950 1786 5353 3133 4810 4746 5559 3437 4974 4575 * * 47 59 5864 5429 3000 193 604 1547 5721 1000 3417 H 48 5323 * 3292 2519 * 3901 4902 * 3991 4256 * 4173 5025 5343 4242 4854 2276 4546 6022 5650 48 56 * 4711 * * 0 * 5879 0 2579 V 49 4425 5981 * * 2649 * * 2811 6196 2298 5273 * * * 6311 * 3883 1913 6065 4964 49 27 * 5774 * * 1000 1000 5834 0 2178 Q 50 4110 * 7261 3424 * * 4633 4442 3713 5959 * 5587 6329 4228 2202 2836 2776 3761 * * 50 0 * * * * 0 * 5676 0 1943 F 51 * * * * 107 * * 6309 * 4469 * * * * * * 6206 * * * 51 0 * * * * * * 5802 0 0 A 52 3949 * 3996 4311 4505 6220 7297 3659 4720 4949 5825 4242 * 4181 3320 5005 2769 2785 6938 4262 52 39 6308 6171 1585 585 * * 5802 1000 0 V 53 5740 * 4927 * * * * 1650 * 1891 3430 * * * * * * 1902 * * 53 106 5568 4328 1000 1000 * 0 5777 1280 1000 H 54 3638 * 6227 4558 6303 5999 5749 4634 4249 4289 * * * 5526 4952 4361 1108 4597 6893 4144 54 69 * 4427 * * 311 2367 5585 0 2885 D 55 * * 190 3399 * 6254 * * * * * * 5983 * * * * * * * 55 257 4380 3116 589 1576 0 * 5664 2388 2946 S 56 4646 6742 3858 3034 4962 1674 5918 * 5242 6083 * 2867 6518 4102 6999 3907 5773 6221 * 4508 56 308 * 2377 * * 0 * 5815 0 3300 L 57 4345 5481 3197 3756 3620 6272 * 7086 3080 3773 6226 4202 4547 4069 4996 4424 3050 4189 6575 5775 57 93 * 3996 * * 0 * 5858 0 3910 G 58 4156 * 4518 3318 * 1504 6845 6618 2607 * 7353 3211 6865 5714 6086 3691 6857 6413 * 6620 58 136 5869 3778 1585 585 0 * 5833 1000 2563 G 59 2228 * 6473 2577 6088 5014 3371 * 3062 * * 4134 6844 3372 4807 6847 3414 5522 * 5420 59 156 4595 4029 1340 725 0 * 5794 2562 3119 E 60 4110 * 3938 2552 * * * 5629 4364 * 5786 5871 4620 3860 4067 3476 2122 3619 * 4960 60 39 6690 5857 1000 1000 0 * 5811 1000 2364 I 61 4176 7307 * * 5641 * * 1973 5204 2072 3619 5843 * 4366 5620 * * 2183 * 6556 61 18 * 6351 * * 0 * 5799 0 1536 L 62 3779 * 4259 3398 * * 5519 * 3082 3697 * 4512 2211 5257 3100 4308 4044 4733 6409 * 62 0 * * * * 0 * 5814 0 1419 V 63 * * * * * * * 3719 * * 5911 * * * * * * 140 * * 63 11 * 7084 * * * * 5802 0 0 T 64 5070 * * 3349 3740 * 3499 3793 5750 5200 6654 5423 * 5500 3386 3381 2865 2430 * 5563 64 18 6303 * 1000 1000 0 * 5805 1000 1000 Y 65 6676 * * 6171 2975 * 4469 * * * * * * * * 6059 6819 * * 358 65 16 6510 * 0 * * * 5802 1000 0 D 66 3848 * 2894 5290 * 7175 4645 5139 3212 6206 * 3156 5629 3618 3318 3972 2569 5734 * 6842 66 0 * * * * * * 5802 0 0 D 67 5774 6510 4138 4630 * 378 6156 * 5937 * * 4925 * 6412 6009 6183 * * * * 67 85 4311 7175 874 1139 * * 5802 2347 0 L 68 2700 * 4726 5379 * 6040 5957 2180 * 3406 7371 5189 2979 * 6151 4606 3776 2740 * * 68 0 * * * * 0 * 5803 0 1000 L 69 4529 * * 6220 * * * 4595 2721 1442 4774 * 3309 5960 6201 * 4278 2612 * * 69 19 * 6290 * * * * 5802 0 0 P 70 5477 * * * * * * * 5032 * * * 149 * 5655 5303 * * * * 70 0 * * * * 0 * 5796 0 1000 D 71 3636 * 820 4626 5873 5833 * * * * * 5459 3836 3448 * 3787 6842 * * 6321 71 19 6264 * 0 * * * 5802 1000 0 L 72 6050 * 4131 5079 6156 5858 * 5292 * 1493 3848 2545 6056 5429 * 5790 2403 * * * 72 0 * * * * * * 5802 0 0 F 73 * * * * 301 * * 4231 * 3592 5427 * * * * * * 5973 * 6290 73 0 * * * * * * 5802 0 0 R 74 3627 * 4498 2856 6232 3893 * * 2279 * 6320 6156 * 4781 1994 4388 4386 4625 * * 74 0 * * * * * * 5802 0 0 E 75 5783 * 2499 855 * 6672 4741 * 4883 * * 4929 5288 5155 4543 6220 5959 6385 * * 75 37 5322 * 1759 505 * * 5802 1519 0 G 76 2937 * 4335 * * 797 6815 * 4364 6534 * 3914 6308 * 5790 3665 * * * * 76 0 * * * * * * 5802 0 0 Q 77 4327 * 5177 2890 * 6320 4934 3863 4454 * * 4864 * 1851 3803 3670 4677 3082 * 6765 77 18 6308 * 0 * * * 5802 1000 0 G 78 5407 * 5780 3619 * 1657 4122 5502 5856 * * 5440 4777 2688 4914 3222 4028 5225 7297 6201 78 0 * * * * * * 5802 0 0 I 79 2764 * * * * * * 2249 * 4373 5147 * * * * * 7082 840 * * 79 0 * * * * * * 5802 0 0 V 80 5960 * * * * * * 2140 * 5183 6056 * * * 6050 5774 5648 597 * * 80 0 * * * * * * 5802 0 0 A 81 1559 4371 * * * 5147 * 4097 * 2931 5432 * * * * * 7059 1458 * * 81 0 * * * * * * 5802 0 0 Q 82 * * 4963 1648 * * * 2957 4280 6250 5629 * * 3672 4693 5174 2272 3586 * * 82 0 * * * * * * 5802 0 0 G 83 5111 * * * * 95 * * * * * * * * 5659 * * 6086 * * 83 22 * 6077 * * * * 5646 0 0 V 84 4348 * 6187 4959 5084 5506 3919 6636 2545 6818 5931 6289 * 4068 2447 3857 2693 4561 * 4083 84 28 5689 * 1585 585 0 * 5627 1000 1000 L 85 * * * * 2149 * * 5692 * 1828 2233 * 5810 * * * * 3821 5251 2776 85 262 * 2591 * * * * 5646 0 0 G 86 4297 * 2130 5322 6519 3236 6622 3117 3516 4026 * 3747 6265 4842 4912 4283 3498 6807 * * 86 231 5306 3028 0 * 0 * 5755 1582 3900 E 87 3520 * 3369 2671 * 3299 * * 3340 * * 5032 3595 2360 4623 4524 4860 4963 * * 87 34 5434 * 3378 146 0 * 5612 1581 3720 D 88 4778 * 1509 3127 * 2675 5858 * 5428 * * 3230 4889 4062 4786 4822 5111 * * * 88 156 5452 3645 0 * * * 5646 1449 0 G 89 * 6644 4537 6077 * 853 6895 * 4383 5907 * 3330 * 3758 6999 3633 5441 * * 5600 89 73 4635 6796 1242 793 0 * 5632 2081 3145 K 90 4209 * 5345 5265 5453 * 4935 4412 3510 5357 5160 5631 5901 6584 4185 5037 2303 1706 * 6519 90 15 6570 * 1585 585 0 * 5679 1000 1000 L 91 * 5614 * * 530 * * 4465 * 2615 5824 * * * * * * 4037 * * 91 0 * * * * * * 5684 0 0 A 92 4730 * * 2736 * * 3153 3175 5427 5061 5389 4169 * 3275 3903 3981 5008 2630 * 5044 92 0 * * * * * * 5684 0 0 A 93 321 3799 * * * 5070 * * * * * * * * * 3612 * 5943 * * 93 0 * * * * * * 5684 0 0 T 94 5152 * 2360 3081 6583 * 5939 5657 3862 * * 3529 * 5987 3765 3243 2033 5815 * * 94 0 * * * * * * 5684 0 0 E 95 6242 * 3428 1871 * * 6011 * 2733 4508 * 4029 * 3455 3545 4713 2895 * * * 95 0 * * * * * * 5684 0 0 V 96 * * * * * * * 1644 * 1489 5164 * * * * * * 1857 * 5657 96 0 * * * * * * 5684 0 0 L 97 * * * 5947 6618 * * 4920 * 520 3273 * * 5054 * * 5158 3612 * * 97 0 * * * * * * 5618 0 0 A 98 1005 5784 * * * * * 4674 * 4979 3848 * * * * * 2794 2328 * * 98 0 * * * * * * 5522 0 0 K 99 * * * * * * * * 150 * * 6054 * * 3576 * * * * * 99 0 * * * * * * 5522 0 0 H 100 * * * * * * 0 * * * * * * * * * * * * * 100 0 * * 0 * * * 4493 0 0 //