HHsearch 1.5 NAME c1i5xA_ FAM FILE c1i5xA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1i5xA_.a3m DATE Thu Mar 11 13:51:32 2010 LENG 61 match states, 61 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4753 1.7306 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EDEEEDDECEDDCDEBEEEDEEBEDDCDEBDEEDECEEDDDCBDDCDDEBDECEEECEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9028999999999999999999999998899757852289999999999999999999529 >Consensus IvqQQxxlLxaiexqqxlLxLtvWGikxLqarxGCNmTWqeWerxIxNytxxIxxlLeeAQ >c1i5xA_ IVQQQNNLLRAIEAQQHLLQLTVWGIKQLQAASGGRGGWMEWDREINNYTSLIHSLIEESQ >UniRef50_Q79670(560-663:876) Transmembrane protein gp41 n=384 Tax=Primate lentivirus group RepID=ENV_HV1MV E=8e-07 s/c=0.53 id=60% cov=102% IVQQQDNLLRAIQAQQHLLRLSVWGIRQLRARLqaletliqnqqrlnlwGCKGklicytsvkwntswsgrynddsiwdnlTWQQWDQHINNVSSIIYDEI QAAQ >UniRef50_Q70IG7(555-659:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=0.0002 s/c=0.45 id=42% cov=102% IVQQQQELLRAVEGHSALLQLSVWGIKNLNARLtaiekylkdqallnewGCawkqichtsvewsnqsipglalyqpdfqNMTWQQWETDIAALFGNVSDA LKKAQ >UniRef50_Q99FH6(554-645:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=2e-05 s/c=0.54 id=43% cov=89% -------LLKLVETQSALLQLTVWGVKNLQVRVatiegyleeqaklasiGCanmqicrtivpwnktwgeedpwqNMTWKQWHERVRNYTDIIEADLVEA- >UniRef50_Q3Y659(59-97:139) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y659_9HIV1 E=0.0006 s/c=1.16 id=50% cov=46% ----------------------------------NNMTWMQWEKEIDNYTGIIYSLIEASK >UniRef50_Q1XE72(572-673:890) Env protein n=10 Tax=Primate lentivirus group RepID=Q1XE72_SIVCZ E=6e-15 s/c=0.80 id=56% cov=102% IVQQQEHLLRAIEHQQHLLQLTVWGIKNLNARLtalekyledqarlnswGCawkqicytsvpwnktwtnstnpdwqNMTWQEWEKLVDNASDTITVLLQE AQ >UniRef50_B3CKG3(572-671:876) Env protein n=1 Tax=SIV-wrc Pbt-05GM-X02 RepID=B3CKG3_SIVCZ E=2e-12 s/c=0.73 id=42% cov=102% IVQQQKNLLELVEKQQELLRLTIWGVKNLQARLsavegyledqvklkqwGCeltqvchtavpweeawnmtpawnNETWQQWHLRTDTLMSNISDMLVQAH >UniRef50_Q699W2(554-652:870) Env protein n=5 Tax=Primate lentivirus group RepID=Q699W2_SIVCZ E=9e-12 s/c=0.72 id=40% cov=102% IVQQQQELLKAVEAHGQLLTLTAWGVRNLNTRLtaiekylkdqaklnewGCafkqichttvpwnnsledpdwdNMTWQEWEMKVANYTDEWEGALQRAQ >UniRef50_P18094(546-644:860) Transmembrane protein gp41 n=433 Tax=Primate lentivirus group RepID=ENV_HV2BE E=6e-10 s/c=0.66 id=44% cov=102% IVQQQQQLLDVVKRQQEMLRLTVWGTKNLQARVtaiekylkhqaqlnswGCafrqvchttvpwvndslspdwkNMTWQEWEKQVRYLEANISQSLEEAQ >UniRef50_Q64G44(59-94:134) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64G44_9HIV1 E=4e-07 s/c=1.55 id=54% cov=61% -------------------------IIKLWMRYGRTLTWLQWDKEISNYTQLIYSLIEESQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 0 * * * * * * * * * * * * 1 0 * * * * * * 2289 0 0 V 2 * * * * * * * * * 3016 * * * * * * * 190 * * 2 0 * * * * * * 2289 0 0 Q 3 * * * 4454 * * * * * * * * * 148 4273 * * * * * 3 0 * * * * * * 2289 0 0 Q 4 * * * * * * * * * * * * * 0 * * * * * * 4 0 * * * * * * 2289 0 0 Q 5 * * * * * * * * * * * * * 0 * * * * * * 5 0 * * * * * * 2289 0 0 N 6 3807 * 3766 5037 * * * * 1938 * * 2063 * 1858 * 4372 * * * * 6 0 * * * * * * 2289 0 0 N 7 * * * 3158 * * 3605 * 3641 * * 783 * 2793 * * * * * * 7 0 * * * * * * 2289 0 0 L 8 * * * * * * * * * 77 4273 * * * * * * * * * 8 0 * * * * * * 2318 0 0 L 9 * * * * * * * * * 0 * * * * * * * * * * 9 0 * * * * * * 2318 0 0 R 10 4866 * 2861 2627 * * * * 2606 * * * * 3982 1189 * * * * * 10 0 * * * * * * 2318 0 0 A 11 606 * * * * * * 4563 * 2702 4273 * * * * * * 3391 * * 11 0 * * * * * * 2318 0 0 I 12 * * * * * * * 919 * * * * * * * * * 1085 * * 12 0 * * * * * * 2321 0 0 E 13 * * 5293 364 * 4825 * * 3437 * * * * 3837 * * * * * * 13 0 * * * * * * 2321 0 0 A 14 910 * * * * 4411 5106 * 2497 * * * * 3612 4044 * 3788 * * * 14 0 * * * * * * 2321 0 0 Q 15 * * * * * * 3262 * * * * * * 159 * * * * * * 15 0 * * * * * * 2321 0 0 Q 16 * * * * * 4127 * * * * * * * 290 * 3000 * * * * 16 0 * * * * * * 2321 0 0 H 17 3571 * * 1646 * * 1081 * * * * * * 3015 * * * * * * 17 0 * * * * * * 2321 0 0 L 18 * * * * * * * * * 264 2578 * * * * * * * * * 18 0 * * * * * * 2321 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 2321 0 0 Q 20 * * * * * 4785 * * 2602 * * * * 1048 1954 * 4127 * * * 20 0 * * * * * * 2321 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 2321 0 0 T 22 * * * * * * * * * * * * * * * 1795 491 * * * 22 0 * * * * * * 2321 0 0 V 23 4064 * * * * * * 1824 * * * * * * * * * 604 * * 23 0 * * * * * * 2314 0 0 W 24 * * * * * * * * * * * * * * * * * * 0 * 24 0 * * * * * * 2321 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 2321 0 0 I 26 4990 * * * * * * 1079 * * * * * * * * 3353 1331 * * 26 0 * * * * * * 2356 0 0 K 27 * * * * * * * 4579 256 * * * * * 3053 * * * * * 27 0 * * * * * * 2356 0 0 Q 28 * * * * * * * * 4579 * * 882 * 1268 * * * * * * 28 0 * * * * * * 2356 0 0 L 29 * * * * * * * * * 0 * * * * * * * * * * 29 0 * * * * * * 2356 0 0 Q 30 * * * * * * * * * * * 2346 * 584 3405 * * * 4579 * 30 0 * * * * * * 2356 0 0 A 31 385 * * * * * * * * * 4579 * * * * * 2671 4834 * * 31 0 * * * * * * 2356 0 0 A 32 4455 * * * * * * * 5102 * * * * * 112 * * * * * 32 0 * * * * * * 2356 0 0 S 33 * * * * * * * 5411 * 1102 4076 * * * * 4455 * 1458 * 4579 33 3516 132 * 4000 93 * * 2356 2313 0 G 34 * * * * * 0 * * * * * * * * * * * * * * 34 0 * * * * * * 2356 0 0 G 35 * 267 * * * 3744 * * * * * 4067 * * 4853 * * * * * 35 1625 565 * 4614 60 * * 3322 2257 0 R 36 * * * * * * * * 2952 * * 597 * * 4382 2969 4876 * * * 36 0 * * * * * * 3314 0 0 G 37 * * 3827 3067 * 2319 * * * 3679 1010 * * 4820 * * * * * * 37 239 2714 * 4700 57 * * 3314 1491 0 G 38 * * * * * 4382 * * * * * * * * * * 71 * * * 38 0 * * * * * * 3314 0 0 W 39 * * * * * * * * * * * * * * * * * * 0 * 39 0 * * * * * * 3314 0 0 M 40 * * * * * * 4699 4195 3836 2694 2128 * * 1141 * * * * * * 40 0 * * * * * * 3314 0 0 E 41 * * * 1078 * * 4555 * 4782 * * * * 1290 * * 4699 * * * 41 0 * * * * * * 3314 0 0 W 42 * * * * * * * * * * * * * * * * * * 0 * 42 0 * * * * * * 3314 0 0 D 43 * * 1379 1234 * * 3706 * * * * * * 4782 * 4846 * * * 4555 43 0 * * * * * * 3314 0 0 R 44 * * * 4839 * * * * 2245 4583 4558 * * 4064 926 * 3575 * * * 44 0 * * * * * * 3314 0 0 E 45 * * 4357 1695 * * 4887 * 2991 2932 * 4820 * 2625 2697 * * * * * 45 0 * * * * * * 3314 0 0 I 46 * * * * * * * 1122 * * * * * * * * 3067 1248 * * 46 0 * * * * * * 3314 0 0 N 47 3454 * 1528 5514 * * * * 4874 * * 2506 * 4993 3315 2336 * * * * 47 0 * * * * * * 3314 0 0 N 48 4357 * * 4555 5520 * * * * * 4874 572 * * 4820 * 4583 * * 3282 48 0 * * * * * * 3314 0 0 Y 49 5586 * 4846 * * * * 5267 * 1548 * * * * * 4230 * 4887 5265 1109 49 0 * * * * * * 3314 0 0 T 50 * * 4874 3001 4357 * * * * * 4583 * * 3688 * 3300 808 * * * 50 0 * * * * * * 3314 0 0 S 51 3199 * 2176 * * 1847 * * * * * 5610 * 2555 * 2587 4846 * * * 51 0 * * * * * * 3314 0 0 L 52 * * * 3317 * * 4699 3499 5497 2500 * 1612 * 4993 * * 2663 4125 * * 52 0 * * * * * * 3314 0 0 I 53 * * * * * * * 138 * * * * * * * * * 4357 4558 * 53 0 * * * * * * 3314 0 0 H 54 * * 3740 3692 4536 * 3945 * * * * * * 4050 * 2231 2889 * * 1593 54 0 * * * * * * 3314 0 0 S 55 3856 * 2231 3383 * 3952 * 5287 4040 * * 3473 * 3616 * 2493 5432 3340 * * 55 0 * * * * * * 3314 0 0 L 56 2981 * 4839 4065 * * * 4993 * 877 3703 * * 5432 4782 3914 * * * * 56 0 * * * * * * 3314 0 0 I 57 * * * * * * * 1860 * 465 * * * * * * * * * * 57 0 * * * * * * 3314 0 0 E 58 * * * 1029 * 5451 * * 3549 * * * * 2102 4530 * * 2993 * * 58 0 * * * * * * 3281 0 0 E 59 4195 * 3993 1142 * * * 4944 3117 4776 * 5623 * 2775 4502 * * 4845 * * 59 0 * * * * * * 3281 0 0 S 60 467 * * * * * * * * * * * * * * 1854 * * * * 60 0 * * * * * * 3281 0 0 Q 61 * * * * * * 2669 * 4936 * * * * 371 4755 * * * * * 61 0 * * 0 * * * 3120 0 0 //