HHsearch 1.5 NAME c1gjjA_ FAM FILE c1gjjA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1gjjA_.a3m DATE Fri Mar 12 23:15:49 2010 LENG 93 match states, 93 columns in multiple alignment FILT 80 out of 84 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4051 0.2561 SEQ >ss_dssp CCCCCSCBEEECHHHHHHHHHHTTCCCCSSCCEHHHHHHEEEEBBTTTCCCCEEECHHHHHHEEEBTTCCCCCCCSSEHHHHHHHEHHHHHHC >sa_dssp EEEBEEDABCBCACCABCBACDBEBEBDEECDDCCBABCBACDBABCDCEDAEEAEDEDACDBACDBCAEBCDBEDEABDDABDBACDBBDED >ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC >ss_conf 935640876763999999999749879799852889999999983211345665697999999998488889817110899999999996369 >Consensus mxxxxxdpsxlTkxxlKsxLxaxnvxLPxxxxxKdvYvxLyxxxixxxnxDvxxLSdxELrxxLxxxGxxxGPItxSTRkvYeKKLxkLlxxg >c1gjjA_ MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG >UniRef50_D2V886(17-69:511) Putative uncharacterized protein n=1 Tax=Naegleria gruberi RepID=D2V886_NAEGR E=2e-11 s/c=1.32 id=39% cov=58% -----ESPTRLTIKELKSILTEHDVELPAQDKKRDFYVDLYNKHIKSKKRKNDEVNDE----------------------------------- >UniRef50_UPI000186E429(2-116:416) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186E429 E=1e-16 s/c=0.76 id=37% cov=89% --------SSMTIDQLKKSLTEQGISLPPSRSKKADYLKLYKQYSTMNDslgdvyssddenppktgsqnvtsstspnknnviKDVEMLSDDELYHQLKEF DANIGPVLKNTRRVYEKKLIKIL--- >UniRef50_UPI000186E77B(4-88:113) hypothetical protein Phum_PHUM397000 n=1 Tax=Pediculus humanus corporis RepID=UPI000186E77B E=6e-14 s/c=0.92 id=29% cov=86% ----------LTNEEIRDKLLELNCKCgPVTDTTRDVYLKKLNNLIKEKNnvKRDEVLNDSDLYNQLISYGQSVAPINSTNRHIYMKRLQNI---- >UniRef50_B7PT17(3-47:660) LEM domain-containing protein, putative n=1 Tax=Ixodes scapularis RepID=B7PT17_IXOSC E=8e-08 s/c=1.30 id=34% cov=44% -----------------------------------------------------DLKDDDLRRQLRDLGEDVGPVTDTTRVVMQRRLTSLLQNG >UniRef50_UPI000180B346(4-118:176) PREDICTED: similar to Lamina-associated polypeptide 2 isoform beta (Thymopoietin isoform beta) (TP beta) n=1 Tax=Ciona intestinalis RepID=UPI000180B346 E=3e-18 s/c=0.81 id=38% cov=92% -------PDDMTKEEIKEQLLAHGVSLPHGNAHKATYVKLYNMHVENQSgsfssddealdnlyskkvnikktypkeweiTNIEQLTNEEISIKLRFFGMV PGPIGPSTRNVYLKKLEKFMSE- >UniRef50_Q6NUU1(671-710:927) Zgc:85936 n=1 Tax=Danio rerio RepID=Q6NUU1_DANRE E=6e-08 s/c=1.46 id=39% cov=41% ------------------------------------------------------LTDTELRHTLLQMGEQPGPINTLTRPLYLQKLRRVLQ-- >UniRef50_Q7QJC9(3-44:750) AGAP007422-PB n=1 Tax=Anopheles gambiae RepID=Q7QJC9_ANOGA E=2e-07 s/c=1.35 id=34% cov=44% ----------------------------------------------------DQLADDELRLRLVQYGFPNLPVTTTTRKILIKKLRHHIDS- >UniRef50_B3RRR5(216-252:424) Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RRR5_TRIAD E=2e-06 s/c=1.45 id=39% cov=41% -------------------------------------------------------SNDKIRQELKDYGEIPGPITATTKKVYLTYIVKLKQQ- >UniRef50_C3YBL9(7-46:834) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YBL9_BRAFL E=1e-06 s/c=1.36 id=34% cov=44% --------------------------------------------------DLHKLSIAELRQKMKEEGQPMGPITSTTRLLFEKRLAQAL--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1936 0 0 P 2 2709 * * * * * * * * * * * 611 * * 2380 * * * * 2 378 * 2116 * * * * 2117 0 0 E 3 * * 2567 799 * * * * * * * * * 3188 * * * 2768 * * 3 0 * * * * 0 * 1962 0 1219 F 4 * * * * 1159 * * * * 1452 * * * * * * * * * 2422 4 0 * * * * * * 2117 0 0 L 5 3075 * * * * * 3708 * * 714 * * * * * * * 2358 * * 5 0 * * * * * * 2253 0 0 E 6 * * 3175 670 * * * * 3242 * * * * 4073 * 3386 * * * * 6 0 * * * * * * 2335 0 0 D 7 * * 287 * * * * * * * * 3386 * * * 3565 * * * * 7 0 * * * * * * 2335 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 2492 0 0 S 9 1784 * 3337 * * * * * * * * * * * * 879 3897 * * * 9 0 * * * * * * 2643 0 0 V 10 * * 3337 * * * * * * 4162 * * * 3971 2072 3328 * 1171 * * 10 0 * * * * * * 2643 0 0 L 11 * * * * 4112 * * * * 378 2533 * * * * * * * * * 11 0 * * * * * * 2943 0 0 T 12 * * * * * * * * * * * * * * * 2260 338 * * * 12 0 * * * * * * 2943 0 0 K 13 * * * * * * * 2815 446 * * 3014 * * * * * * * * 13 0 * * * * * * 2943 0 0 D 14 * * 1198 1482 * * * * 4174 * * * * * * 2728 * * * * 14 0 * * * * * * 2943 0 0 K 15 * * * 1915 * * * * 1692 * * * * 2757 1851 * * * * * 15 0 * * * * * * 2943 0 0 L 16 * * * * * * * 2253 * 340 * * * * * * * * * * 16 0 * * * * * * 2943 0 0 K 17 * * * * * * * * 191 * * * * * 3014 * * * * * 17 0 * * * * * * 2943 0 0 S 18 3867 * 3014 3539 * * * * 3527 * * * * * 4031 802 * * * * 18 0 * * * * * * 2943 0 0 E 19 4920 * 2728 1338 * * * 4174 3014 3867 * * * 3539 * 3527 * * * * 19 0 * * * * * * 2943 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 2943 0 0 V 21 * * * * * * * 4112 * 984 4314 * * * 4031 3867 2468 3720 * * 21 0 * * * * * * 2943 0 0 A 22 727 * * 1612 * * * * * * * * * * * * 3867 * * * 22 0 * * * * * * 2943 0 0 N 23 4031 * * * * * 1217 * * 3014 * 1746 * 3527 * * * * * * 23 0 * * * * * * 2943 0 0 N 24 * * 4174 * * 1725 * * * * * 639 * * * * * * * * 24 0 * * * * * * 2943 0 0 V 25 * 3014 * * * * * 3527 * * 3148 * * * * * * 564 * * 25 0 * * * * * * 2943 0 0 T 26 1626 * 4831 3319 * * * * 3014 * * * 3223 * * 2096 3720 * * * 26 0 * * * * * * 2943 0 0 L 27 * 3014 * * * * * * * 191 * * * * * * * * * * 27 191 3014 * 0 * * * 2943 1000 0 P 28 * * * * * * * * * * * * 0 * * * * * * * 28 0 * * * * * * 2943 0 0 A 29 3454 * * 3867 * * 3539 * * * * 4920 1759 * * 1889 4972 3014 * * 29 0 * * * * * * 2943 0 0 G 30 2313 * * * * 1196 * * * * * * 4112 4174 * 2996 3014 * * * 30 0 * * * * * * 2943 0 0 E 31 * * 1462 2099 * * * * * * * 1658 * * 3527 * * * * * 31 0 * * * * * * 2943 0 0 Q 32 3539 * * * * * * * 4174 * * * 3644 1694 * 1532 3014 * * * 32 0 * * * * * * 2943 0 0 R 33 * * * * * * 3539 * 1792 * * * 4479 * 1247 * 2653 * * * 33 0 * * * * * * 2943 0 0 K 34 * * * * * * * * 285 * * * * * 2481 * * * * * 34 0 * * * * * * 2943 0 0 D 35 2533 * 607 3148 * * 4112 * * * * * * * * * * * * * 35 0 * * * * * * 2943 0 0 V 36 4112 * 3527 * 4174 * * * * * * * * * * * 3539 486 * * 36 0 * * * * * * 2943 0 0 Y 37 * * * * 4479 * * * * * * * * * * * * * * 66 37 0 * * * * * * 2943 0 0 V 38 * * * * * * * 4696 * 2248 * * * * * * * 413 * * 38 0 * * * * * * 2943 0 0 Q 39 * * 4174 1890 * * * * 1454 * * * * 1692 * * * * * * 39 0 * * * * * * 2943 0 0 L 40 * * * * * * * * 3014 191 * * * * * * * * * * 40 0 * * * * * * 2943 0 0 Y 41 * * * * * * 2728 * * 3014 * * * * * * * * * 463 41 0 * * * * * * 2943 0 0 L 42 * * * * * * * * 3527 948 3867 1915 * * 4031 * * * * * 42 0 * * * * * * 2943 0 0 Q 43 * * * * * * * * 1006 * 3539 3014 * 2113 * * 4031 * * * 43 0 * * * * * * 2943 0 0 H 44 * * * 3644 * * 848 * * 3014 * 2701 * * * * * * * 3527 44 0 * * * * * * 2943 0 0 L 45 * * * * * * * 1327 * 1431 * * * * * 3527 * 2797 * * 45 91 4031 * 5392 35 * * 2943 1000 0 T 46 * * * 2077 * * * * 2077 * * * * 3867 * * 1128 * * * 46 0 * * * * * * 2943 0 0 A 47 4803 * * 3014 * * * * * * 3527 2694 * 2728 * 2080 4112 2701 * * 47 52 4831 * 4700 57 * * 2943 1000 0 R 48 * * * * * * * * 1807 4314 * 2790 4031 1866 2444 * * * * * 48 0 * * * * * * 2943 0 0 N 49 * * 3062 3363 * * * * 4236 * * 745 * * * 2909 * * * * 49 713 1636 3870 4431 68 * * 2962 2271 0 R 50 4782 * * * * * * 3190 1603 * 2098 * * * 2727 * 3249 4838 * * 50 405 2030 * 5308 37 * 0 3083 1677 1000 D 51 * * 421 * * * * * 4958 * * 3265 * * 4358 3873 * * * * 51 69 4422 * 5436 34 0 * 3543 1443 1000 V 52 3400 * 4404 * 3290 * * 3049 * 3545 4612 6005 5058 * * * * 1286 * 4244 52 0 * * * * * * 3672 0 0 T 53 2551 * 2191 3117 * * 4251 4787 4349 * * * * 4876 6195 2987 2447 * * * 53 0 * * * * * * 3768 0 0 E 54 3990 4499 3232 2674 * 4690 * 6032 3681 * 4976 5316 * 2622 * 2755 4354 3619 * * 54 15 6571 * 4585 61 * * 3828 1000 0 L 55 * * * * 4166 * * 5932 * 200 4316 * * * * * * 7085 * * 55 0 * * * * * * 3789 0 0 T 56 6145 * 6482 * * * * * 5981 * * 3695 * * 6577 793 1766 * * * 56 0 * * * * * * 3818 0 0 N 57 5153 5147 831 * * 6239 * 5670 * * * 2022 4325 * * 4250 * * * * 57 64 * 4532 * * * * 3818 0 0 E 58 2632 6464 1873 2178 * 6481 * 6508 4475 6078 * 4777 * 4123 * 4206 3874 5925 * 5736 58 0 * * * * * 0 3724 0 1000 D 59 5344 * 2704 572 * 5709 * * 4779 * 5969 * * 4267 * 5289 * * * * 59 0 * * * * * 0 3721 0 1000 L 60 * * * * * * * 2885 * 251 * * * * * * * 5371 * * 60 0 * * * * * 0 3721 0 1000 L 61 5031 6766 * * 4194 * 4414 4906 3048 4277 * * * 4312 1012 5075 6250 5782 * 4457 61 0 * * * * 0 * 3721 0 1000 D 62 2703 5419 3438 2975 * 6011 4489 5825 3175 4121 * 4047 * 3633 3628 3706 5144 5019 * * 62 0 * * * * * * 3810 0 0 Q 63 6231 * * 1747 * * 5806 * 2202 4035 5554 5247 * 2496 3423 6024 4996 5175 * * 63 0 * * * * * * 3810 0 0 L 64 * * * 4600 5855 * * 5921 * 238 4042 * * * * * * 5921 * * 64 0 * * * * * * 3927 0 0 V 65 5413 * 3482 5692 * * * 2407 2375 3035 4424 6313 * 4408 2710 4877 5406 4393 * * 65 0 * * * * * * 3927 0 0 K 66 3164 * 4092 2402 5797 * * * 2221 6196 * * * 2507 3925 3620 4527 6313 * 6022 66 0 * * * * * * 3927 0 0 Y 67 2957 5286 * 5644 2799 * 3183 * * 2778 5633 * * 4619 6313 4780 * * * 1661 67 0 * * * * * * 3927 0 0 G 68 * * 4778 * * 233 * * * * * 4117 * 4600 6181 * * * * * 68 0 * * * * * * 3927 0 0 V 69 4465 6301 3638 2931 2928 * 5642 2554 4800 2815 5100 * * 4053 * 5593 * 3505 * 4931 69 0 * * * * * * 3927 0 0 N 70 5053 * 3368 4600 * * 6233 5397 2634 * 6830 3208 1967 3996 * 3073 4311 5109 * * 70 0 * * * * * * 3927 0 0 P 71 3859 4314 * * * * 2959 5990 * 5711 5644 3414 1428 * * 4370 * 2446 * * 71 24 5939 * 0 * * * 3927 1000 0 G 72 4371 5981 * * * 373 * 4285 4600 5382 5046 * * * * * 5890 * * * 72 0 * * * * * * 3927 0 0 P 73 * * * * * 4600 * * * * * * 61 * * * * * * * 73 0 * * * * * * 3927 0 0 I 74 * * * * * * * 759 * 4345 * * * * * * * 1475 * * 74 61 4600 * 1000 1000 * * 3927 1000 0 V 75 * * 5939 * * 5797 * 5593 * 2890 * 4339 * * * 5148 964 2185 * * 75 0 * * * * * * 3927 0 0 G 76 2286 * 2503 3481 * 3219 5780 * 5173 * * 6022 2592 5882 * 2806 4856 * * * 76 0 * * * * * * 3927 0 0 T 77 5401 * * * 5387 * * * * 5633 * 4516 * * 5939 1095 1307 * * * 77 0 * * * * * * 3927 0 0 T 78 * * * * * * * * * * * 5095 * * * 4294 121 * * * 78 0 * * * * * * 3927 0 0 R 79 * * * * * * * * 4346 * * * * 5148 116 * * * * * 79 0 * * * * * * 3927 0 0 K 80 2998 * 6082 * 4654 5921 5084 * 1347 5641 * 4280 4051 4207 3823 3819 5286 5154 * * 80 0 * * * * * * 3930 0 0 L 81 * * * * * * 5385 2931 * 1609 * * 5998 * * * 4275 1153 * * 81 0 * * * * * * 3930 0 0 Y 82 * * * * 3803 * * * * 2674 5164 * * * * * * * 5776 463 82 0 * * * * * * 3930 0 0 E 83 5349 * * 1074 * * 5708 3535 5592 2461 5084 * * 4176 6082 * * 3425 * * 83 0 * * * * * * 3930 0 0 K 84 * * * 5867 * * * * 614 * * 4641 * 4975 2200 5950 5388 * * * 84 0 * * * * * * 3926 0 0 K 85 * * * * 5950 * * * 644 5977 * * * 4527 2262 * * * 5378 4260 85 0 * * * * * * 3926 0 0 L 86 * * * * * * * 3789 * 108 * * * * * * * * * * 86 57 4685 * 0 * * * 3926 1055 0 L 87 3101 * * 4109 * * * 5068 2829 5077 * 5289 * 2375 2045 * 4823 2950 * * 87 0 * * * * * * 3837 0 0 K 88 4013 * * 4564 * * 5485 * 1305 * 5710 3916 * 3451 1963 5575 6117 * * * 88 31 5540 * 0 * * * 3811 1000 0 L 89 5034 * * * 4203 * 4478 3941 5463 520 * * * * 5875 * * 3880 * * 89 0 * * * * * * 3737 0 0 R 90 * * * 4822 * * * 3370 4482 766 3397 * * * 3006 5976 * * * * 90 0 * * * * * * 3630 0 0 E 91 3574 * 2552 1717 * * * * 4612 * * 5290 * 1650 5555 4840 * * * * 91 0 * * * * * * 3550 0 0 Q 92 * * 3407 1989 * * 4356 * * * * 4590 3460 1891 * 2301 * * * * 92 0 * * * * * * 3449 0 0 G 93 * * * * * 0 * * * * * * * * * * * * * * 93 0 * * 0 * * * 2550 0 0 //