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Job DescriptionGood_intensive
Confidence98.59%DateSun Sep 7 16:58:53 BST 2014
Rank106Aligned Residues200
% Identity9%Templatec2qbyA_
PDB info PDB header:replication/dnaChain: A: PDB Molecule:cell division control protein 6 homolog 1; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
Resolution3.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   120.........130.........140.........150.........160.........170.........
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Query Sequence  IEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLN
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Template Sequence  EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLD
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   54.....60.........70.........80.........90.........100.........110...
 
   180.........190..... ....200.........210......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . QNPDGADMKLFCQMVS. . . TVEFIPPMASLEEKGILFTSN
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Template Sequence  VKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKI
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   114.....120.........130.........140.........150.........160.........170...
 
   217..220.........230.........240.........250.........260.........270......
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Query Sequence  YVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPA
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Template Sequence  SFIGITNDVKFVDLLDPR. . VKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN
Template Known Secondary structure  S
GGGGGG
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   176...180.........190... ......200.........210.........220.........230...
 
   277..280..... ....290.........300.........310.........320.
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Query Sequence  NFKRCCPLV. . . . . . . . . . . . . CGKAIQLMDKSSRVRYSIDQITTMIINERNRRSNIG
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Template Sequence  VIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDI
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   234.....240.........250.........260.........270.........280.........290.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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