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Job DescriptionGood_intensive
Confidence97.22%DateSun Sep 7 16:58:53 BST 2014
Rank260Aligned Residues201
% Identity12%Templatec1ny5A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.........120.........130.........140..... ....150.....
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Query Sequence  KRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARA. . . IAERENTSTY
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Template Sequence  PKMKEILEKIKKISCAEC. . . . . . . PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV
Template Known Secondary structure  TT

S.......

STTSSSTTTTS
T
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   144.....150.........160. ........170.........180.........190......
 
   156...160.........170.........180.... .....190.........200.......
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Query Sequence  SLPPDPSHFDGYKQQGVVIMDDLNQNPDG. . . . . ADMKLFCQMVSTVEFIPPMASLE. . .
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Template Sequence  ASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIE
Template Known Secondary structure  TTS

B
TTSSTT

S
B

TTTSSGGG

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   197..200.........210.........220.........230.........240.........250......
 
   208.210.........220.........230.........240.........250........
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Query Sequence  . . . . . . . . . EKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDG
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Template Sequence  SGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLG. VIEIEIPPLRER. .
Template Known Secondary structure  S

BT

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SS
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T.T


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   257..260.........270.........280.........290.........300. ........310...
 
   259260.........270.........280.........290.........300. ........310.......
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Query Sequence  KLNMAMATEMCKNCHQPANFKRCCPLVCGKAIQLMDKSSRVRY. SIDQITTMIINERNRR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . KEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWY
Template Known Secondary structure  ....................TT




S

T
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   314.....320.........330.........340.........350...
 
   318.320.........
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Query Sequence  SNIGNCMEALFQ
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Template Sequence  GNVRELKNVIER
Template Known Secondary structure  T
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   354.....360.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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