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Job DescriptionGood_intensive
Confidence98.75%DateSun Sep 7 16:58:53 BST 2014
Rank99Aligned Residues207
% Identity8%Templatec1fnnB_
PDB info PDB header:cell cycleChain: B: PDB Molecule:cell division control protein 6; PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
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Query Sequence  QKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP
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Template Sequence  QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI
Template Known Secondary structure  S
BSS



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TTT
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   23......30.........40.........50.........60.........70.........80..
 
   162..... ..170.........180 .........190..... ....
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Query Sequence  SHFDGY. . . . . . . . . . . . . . . . KQQGVVIMDDLNQ. . NPDGADMKLFCQMVS. . . . TVEF
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Template Sequence  YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILS
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TGGGS
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   83......90.........100.........110.........120.........130.........140..
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  IPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGK
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Template Sequence  TFIRLGQEADKLGAFRIALVIVGHNDAVLN. . NLDPSTRGIMGKYVIRFSPYTKDQIFDI
Template Known Secondary structure  TT
SSB
SST..TS
TT




B
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   143......150.........160.........170.. .......180.........190.........200
 
   260.........270.........280.... .....290.........300
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Query Sequence  LNMAMATEMCKNCHQPANFKRCCPL. . . . . . . . . . . . . . . . . . . VCGKAIQLMDKSSRVR
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Template Conservation 
                    
                                      
Template Sequence  LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKH
Template Known Secondary structure  B
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SBSSTT
TT


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   201........210.........220.........230.........240.........250.........260
 
   301........310
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Query Sequence  YSIDQITTMI
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Template Conservation 
         
Template Sequence  IAPEDVRKSS
Template Known Secondary structure 

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   261........270
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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