Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.43%DateSun Sep 7 16:58:53 BST 2014
Rank44Aligned Residues187
% Identity13%Templatec3pfiB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
Resolution2.69 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
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Query Sequence  QKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP
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Template Sequence  ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSANIKTTAAPXIEKS
Template Known Secondary structure  TT




SSTTSSTT

GGG

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   32.......40.........50.........60.........70.........80.........90.
 
   162.......170.........180.........190..... ....200.........210........
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Query Sequence  SHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVS. . . TVEFIPPMASLEEKGILFTSNYV
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Template Sequence  GDLAAIL. . . . . . . . . . . . TNLSEGDILFIDEIHRLSPAIEEVLYPAXEDYPKF. . . . TL
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TT
SGGG

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   92...... .100.........110.........120.........130... ..
 
   219220.........230.........240.........250.........260.........270........
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Query Sequence  LASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANF
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Template Sequence  IGATTRAGXLSN. . . . . . PLRDRFGXQFRLEFYKDSELALILQKAALKLNKTCEEKAALE
Template Known Secondary structure  S
GGGS
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TT

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   155....160...... ...170.........180.........190.........200........
 
   279280.. .......290.........300.........310
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Query Sequence  KRCC. . . . . . . . PLVCGKAIQLMDKSSRVRYSIDQITTMI
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Template Sequence  IAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEAL
Template Known Secondary structure  TTT
TT
S
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   209210.........220.........230.........240........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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