Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.37%DateSun Sep 7 16:58:53 BST 2014
Rank51Aligned Residues203
% Identity9%Templatec2z4rB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
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Query Sequence  QKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP
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Template Sequence  SFAYHAALEVAKHPGRYNP. . . . LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE
Template Known Secondary structure  STTTS

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   114.....120.........130.. .......140.........150.........160.........
 
   162.......170... ......180.........190...... ...200.........210......
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Query Sequence  SHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . VEFIPPMASLEEKGILFTSN
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Template Sequence  KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ
Template Known Secondary structure  TS
TTT
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GGGGTT
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   170.........180.........190.........200.........210.........220.........
 
   217..220.........230.........240.........250.........260.........270.....
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Query Sequence  YVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQP.
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Template Sequence  IVICSDREPQKLSEFQDRLVSRFQMG. LVAKLEPPDEETRKSIARKMLEIEHGELPEEVL
Template Known Secondary structure  SS
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   230.........240.........250..... ....260.........270.........280........
 
   276...280.........290.........300.........310
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Query Sequence  . . . . . . . ANFKRCCPLVCGKAIQLMDKSSRVRYSIDQITTMI
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Template Sequence  NFVAENVDDNLRRLRGAIIKLLVYKETTGKE. VDLKEAILLL
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   289290.........300.........310......... 320.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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