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Job DescriptionGood_intensive
Confidence99.83%DateSun Sep 7 16:58:53 BST 2014
Rank17Aligned Residues188
% Identity18%Templatec3eihB_
PDB info PDB header:protein transportChain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas
Resolution3.25 Å
Model Dimensions (Å)X:59.232 Y:53.814 Z:45.794

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.......
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Query Sequence  AKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSL
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Template Sequence  KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE. . . . . ANSTFFS
Template Known Secondary structure  T
GGG

TT





STTS
T.....TT
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   142.......150.........160.........170.........180......... 190......
 
   158.160.........170... ......180.........190...... ...200..
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Query Sequence  PPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . . . . . . . VEFIPP
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Template Sequence  VSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL
Template Known Secondary structure  TTTSSSS
TTTTTSSSGGGG



SSSSSSSSSTT
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   197..200.........210.........220.........230.........240.........250......
 
   203......210.........220.........230.........240.........250.........260..
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Query Sequence  MASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNM
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Template Sequence  LVQMNGVGNDSQGVLVLGATNIPWQLDS. . . . . . AIRRRFERRIYIPLPDLAARTTMFEI
Template Known Secondary structure  TTSTTTTS
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TTS
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   257..260.........270.........280.... .....290.........300.........310
 
   263......270.. .......280.........290......
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Query Sequence  AMATEMCKNC. . . . . . . . . HQPANFKRCCPLVCGKAIQLMDKS
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Template Sequence  NVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK
Template Known Secondary structure  TTS




T
TT

T
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   311........320.........330.........340.........350...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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