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Job DescriptionGood_intensive
Confidence99.08%DateSun Sep 7 16:58:53 BST 2014
Rank85Aligned Residues180
% Identity10%Templatec3bosA_
PDB info PDB header:hydrolase regulator,dna binding proteinChain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   120.........130.........140.........150.........160.........170.........
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Query Sequence  IEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLN
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Template Sequence  DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEG. . . . . . . .
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STTSSTT

GGGGGGS
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   4950.........60.........70.........80.........90.........100
 
   180.........190..... ....200.........210.........220.........230.....
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Query Sequence  QNPDGADMKLFCQMVS. . . . TVEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHS
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Template Sequence  . . . LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPXEAGFVLPD
Template Known Secondary structure  ...GGGSSTGGGGTT

S
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   101........110.........120.........130.........140.........150.......
 
   236...240.........250.........260.........270 .........280.........290....
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Query Sequence  DALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCK. NCHQPANFKRCCPLVCGKAIQLMD
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Template Sequence  LVSRXHWGLTYQLQPXXDDEKLAALQRRAAXRGLQLPEDVGRFLLNRXARDLRTLFDVLD
Template Known Secondary structure  S




GGGTT



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   158.160.........170.........180.........190.........200.........210.......
 
   295....300.........310
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Query Sequence  . . . . . . KSSRVRYSIDQITTMI
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Template Sequence  RLDKASXVHQRKLTIPFVKEXL
Template Known Secondary structure  T



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   218.220.........230.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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