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Job DescriptionGood_intensive
Confidence99.44%DateSun Sep 7 16:58:53 BST 2014
Rank43Aligned Residues221
% Identity12%Templatec1sxjA_
PDB info PDB header:replicationChain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.... .....120.........130.........140.........
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Query Sequence  QKLEHTINNYIQF. . . . . . . . . . . . KSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAER
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Template Sequence  KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD
Template Known Secondary structure  TTTT



TTSTTS
S
STTSSTT
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   314.....320.........330.........340.........350.........360.........370...
 
   150.........160.........170.........180. ........190..... ....200...
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Query Sequence  ENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQN. . . . PDGADMKLFCQMVS. . TVEFIPPM
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Template Sequence  ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHQNLNGKHFVIIMDEVDGMSGGDRGGV
Template Known Secondary structure 
TTS


TGGGGTT


STTTTT


SSTTS
SGGG

TTSTT
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   374.....380.........390.........400.........410.........420.........430...
 
   204.....210.........220.........230.........240.........250.........260...
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Query Sequence  ASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMA
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Template Sequence  GQLAQFCRKTSTPLILICNERNLPKMRPFD. . . . . . . RVCLDIQFRRPDANSIKSRLMTI
Template Known Secondary structure 
SS
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TTSSTTGGGT.......TTS




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   438.440.........450.........460....... ..470.........480.........490
 
   264.....270.... .....280.........290.........300.........310.........
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Query Sequence  MATEMCKNCHQ. . . . PANFKRCCPLVCGKAIQLMDKSSRVRYSIDQITTMIINERNRRSN
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Template Sequence  AIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALK
Template Known Secondary structure  T



TTTTT
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   491........500.........510.........520.........530.........540.........550
 
   320.........
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Query Sequence  IGNCMEALFQ
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Template Conservation   
 
  


 
Template Sequence  PFDIAHKMLD
Template Known Secondary structure  TB
Template Predicted Secondary structure 
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   551........560
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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