Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.90%DateSun Sep 7 16:58:53 BST 2014
Rank3Aligned Residues217
% Identity17%Templatec3hu2C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97 n-d1 r86a mutant in complex with atpgs
Resolution2.85 Å
Model Dimensions (Å)X:68.298 Y:44.145 Z:53.165

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110....... ..120.........130.........140.........150......
Predicted Secondary structure 


.















Query SS confidence 



















.






































Query Sequence  AKRIQKLEHTINNYIQFKSK. HRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYS
Query Conservation     
                . 
  
  


 



 


 

  

  
          
Alig confidence 



















.



























.....





Template Conservation     
   
  
          
      


 

 




 
   

  .....      
Template Sequence  LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE. . . . . TGAFFF
Template Known Secondary structure  T
T





STTSS.....
SS
Template Predicted Secondary structure 















.....



Template SS confidence 



























































   213......220.........230.........240.........250.........260. ......
 
   157..160.........170... ......180.........190...... ..
Predicted Secondary structure 



.







.................
Query SS confidence 
















.






















. . . . . . . . . . . . . . . . .

Query Sequence  LPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . . . . . . . . . . VE
Query Conservation            
 
  
 .  
                 

 .................  
Alig confidence 
















.






















.................

Template Conservation   
    
     
     
   
  
    
 

 




 
                  
Template Sequence  LINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ
Template Known Secondary structure  TS
TTSSSSGGGT
B
SSS


Template Predicted Secondary structure 
















Template SS confidence 



























































   268.270.........280.........290.........300.........310.........320.......
 
   199200.........210.........220.........230.........240.........250........
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  FIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDG
Query Conservation      
     
        

 


        
    
  

    
 
          
Alig confidence 











....





















....

















Template Conservation 
    
      .... 
 

  

    

  
 
  ....

   
 
  
    
  
Template Sequence  LLTLMDGLKQRA. . . . HVIVMAATNRPNSIDPALRRFG. . . . RFDREVDIGIPDATGRLE
Template Known Secondary structure  S
GGG....

S
GGGB
GGGGSTT....SS





Template Predicted Secondary structure 






....







....







Template SS confidence 



























































   328.330......... 340.........350.........360. ........370.........
 
   259260.........270.........280.... .....290.........300.........310
Predicted Secondary structure 








........






Query SS confidence 

























. . . . . . . .

























Query Sequence  KLNMAMATEMCKNCHQPANFKRCCPL. . . . . . . . VCGKAIQLMDKSSRVRYSIDQITTMI
Query Conservation   
                        ........    
              
  
  
Alig confidence 

























........

























Template Conservation 

           
     

  
 
    

  
   
   
                 
Template Sequence  ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA
Template Known Secondary structure  STTS
B
TT


TT

TTTS

TTSSS

Template Predicted Secondary structure 





















Template SS confidence 



























































   380.........390.........400.........410.........420.........430.........
 
   311........320.......
Predicted Secondary structure 
Query SS confidence 
















Query Sequence  INERNRRSNIGNCMEAL
Query Conservation           
      
Alig confidence 
















Template Conservation         
   
   

Template Sequence  EVMNSLAVTMDDFRWAL
Template Known Secondary structure 

B
Template Predicted Secondary structure 




Template SS confidence 
















   440.........450......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in JSmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D