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Job DescriptionGood_intensive
Confidence99.89%DateSun Sep 7 16:58:53 BST 2014
Rank6Aligned Residues213
% Identity14%Templatec4b4tJ_
PDB info PDB header:hydrolaseChain: J: PDB Molecule:26s protease regulatory subunit 8 homolog; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
Resolution7.40 Å
Model Dimensions (Å)X:57.899 Y:64.936 Z:46.430

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100...... ...110.........120.........130.........140.........150......
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Query Sequence  AKRIQKLEH. TINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYS
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Template Sequence  IKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH. . . . . TDCKFI
Template Known Secondary structure  T
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   157..160.........170.........180.........190.........200..... ....210.
 
   157..160.........170... ......180.........190....... ..
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Query Sequence  LPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVSTV. . . . . . . . . . . . . . . . EF
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Template Sequence  RVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRT
Template Known Secondary structure  GGGGS
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   212.......220.........230.........240.........250.........260.........270.
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  IPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGK
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Template Sequence  MLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPG. . . . RIDRKIEFPPPSVAARAEI
Template Known Secondary structure  TTT



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   272.......280.........290.........300........ .310.........320.......
 
   260.........270.........280.... .....290.........300.........310.
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Query Sequence  LNMAMATEMCKNCHQPANFKRCCPL. . . . . . . . VCGKAIQLMDKSSRVRYSIDQITTMII
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Template Sequence  LRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVG
Template Known Secondary structure  TTSB

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   328.330.........340.........350.........360.........370.........380.......
 
   312.......
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Query Sequence  NERNRRSN
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Template Sequence  KVMNKNQE
Template Known Secondary structure  T
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   388.390.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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