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Job DescriptionGood_intensive
Confidence99.05%DateSun Sep 7 16:58:53 BST 2014
Rank88Aligned Residues223
% Identity10%Templatec4gdfF_
PDB info PDB header:hydrolase/dnaChain: F: PDB Molecule:large t antigen; PDBTitle: a crystal structure of sv40 large t antigen
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.....
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Query Sequence  SKFIDWLKEKIIPQARDKLEFVTKLRQLEMLENQISTIHQSCPSQEHQEILFNNVRWLSI
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Template Sequence  KTICQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAW
Template Known Secondary structure  S
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   334.....340.........350.........360.........370.........380.........390...
 
   86...90.........100.........110.........120.........130.........140.....
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Query Sequence  QSKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARA
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Template Sequence  LHCLLPKMDSVVYDFLKCMVY. . . . . . . . . . . NIPKKRYWLFKGPIDSGKTTLAAALLEL
Template Known Secondary structure  TTTSTT...........

TT


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   394.....400.........410.... .....420.........430.........440..
 
   146...150.........160.........170.........180.........190.........200
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Query Sequence  IAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVSTVEFI. . . . .
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Template Sequence  CGGKALNVNLPLDRLNFELGVAIDQFLVVFED. . . . . VKGTGGESRDLPSGQGINNLDNL
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S
TTGGGTTGGGGTT
S.....

SSGGGGT



STT
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   443......450.........460.........470.... .....480.........490.......
 
   201........210.........220.........230.........240.........250.
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Query Sequence  . . . . . . . . . PPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVM
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Template Sequence  RDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN. . EYSVPKT. . . . LQAR. FVKQIDFRPK
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TT....TGGG.
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   498.500.........510.........520......... 530...... ...540 .........550
 
   252..... ..260.........270.
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Query Sequence  NEYSRD. GKLNMAMATEMCKN
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Template Sequence  DYLKHCLERSEFLLEKRIIQS
Template Known Secondary structure  TTTT
TT
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   551........560.........570.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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