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Job DescriptionGood_intensive
Confidence99.95%DateSun Sep 7 16:58:53 BST 2014
Rank1Aligned Residues224
% Identity15%Templatec3cf1C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
Resolution4.40 Å
Model Dimensions (Å)X:61.760 Y:54.226 Z:47.882

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140......
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Query Sequence  SKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAI
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Template Sequence  WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE.
Template Known Secondary structure  TTTT
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   476...480.........490.........500.........510.........520.........530....
 
   147..150.........160.........170... ......180.........190......
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Query Sequence  AERENTSTYSLPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . .
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Template Sequence  . . . . CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI
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   535....540.........550.........560.........570.........580.........590
 
   197..200.........210.........220.........230.........240.....
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Query Sequence  . . . . . . . . . . . VEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFD
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Template Sequence  GDGGGAADRVINQILTEMDGMST. . . . KKNVFIIGATNRPDIIDPAILRPG. . . . RLDQL
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   591........600.........610... ......620.........630....... ..640..
 
   246...250.........260.........270.........280.........290.........300.....
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Query Sequence  MDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCPLVCGKAIQLMDKSSRVRYSIDQ
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Template Sequence  IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA. . . .
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   643......650.........660.........670.........680.........690........
 
   306...310.........320.......
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Query Sequence  ITTMIINERNRRSNIGNCMEAL
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Template Sequence  IRESIESEIVPEIRRDHFEEAM
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   699700.........710.........720
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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