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Job DescriptionGood_intensive
Confidence99.40%DateSun Sep 7 16:58:53 BST 2014
Rank48Aligned Residues220
% Identity16%Templatec2c9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:ruvb-like 1; PDBTitle: 3d structure of the human ruvb-like helicase ruvbl1
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
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Query Sequence  QKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP
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Template Sequence  ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG. . . SKVPFCPMVGS
Template Known Secondary structure  TT

TT


TTSS
...TTS
GG
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   43......50.........60.........70.........80........ .90.........
 
   162.......170.........180......
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Query Sequence  SHFDGYKQQGVVIMDDLNQNPDGAD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation            
                   
   
                         
Template Sequence  EVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCHVIIGLKTAKGTKQLKLD
Template Known Secondary structure  GG

SSS
T

TT
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   100.........110.........120.........130.........140.........150.........
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKE
Template Known Secondary structure  TT

TTTTT

TTS

TTS
SSSS



S
S
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   174.....180.........190.........200.........210.........220.........230...
 
   187..190.........200.........210..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MKLFCQMVSTVEFIPPMASLEEKGIL
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Template Sequence  IIQDVTLHDLDVANGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESS
Template Known Secondary structure  T

TTS
SGGG
BTTST
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   234.....240.........250.........260.........270.........280.........290...
 
   213......220.........230.... .....240.........250.........260......
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Query Sequence  FTSNYVLASTNSSRISPPTVAH. . . . . . SDALARRFAFDMDIQVMNEYSRDGKLNMAMAT
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Template Sequence  IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV. MIIRTMLYTPQEMKQIIKIRAQT
Template Known Secondary structure  T



S
BTTSS
TT

TT.




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   323......330.........340.........350........ .360.........370.........380.
 
   267..270.... .....280.........290.........300.........310.......
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Query Sequence  EMCKNCHQ. . . . . . . . . PANFKRCCPLVCGKAIQLMDKSSRVRYSIDQITTMIINERNRR
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Template Sequence  EGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAK
Template Known Secondary structure  T

B
S
TTT
SSB
S

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   382.......390.........400.........410.........420.........430.........440.
 
   318.320.....
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Query Sequence  SNIGNCME
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Template Conservation          
Template Sequence  SSAKILAD
Template Known Secondary structure 
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   442.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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