Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.28%DateSun Sep 7 16:58:53 BST 2014
Rank66Aligned Residues192
% Identity12%Templatec3u5zM_
PDB info PDB header:dna binding protein/dnaChain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  PVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQN
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Template Sequence  PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFAS. . . . . . AAS
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   43......50.........60.........70.........80.........90... ...
 
   182.......190.........200......... 210.........220.........230.........240
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Query Sequence  PDGADMKLFCQMVSTVEFIPPMASLEEK. GILFTSNYVLASTNSSRISPPTVAHSDALAR
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Template Sequence  FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIK. . . . . . PLQS
Template Known Secondary structure  TT


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GGGTTTTS
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   97..100.........110.........120.........130.........140...... ...150
 
   241........250.........260..... ....270.........280.........290.
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Query Sequence  RFAFDMDIQVMNEYSRDGKLNMAMA. . . . . . . . . TEMCKNCHQPANFKRCCPLVCGKAIQ
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Template Sequence  R. CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG
Template Known Secondary structure  .STT


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   151 ........160.........170.........180.........190.........200.........
 
   292.......300.........310.........320......
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Query Sequence  LMDKSSRVRYSIDQITTMIINERNRRSNIGNCMEA
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Template Sequence  ELDSYSSKGVLDAGILSLVTNDRGAIDDVLESLKN
Template Known Secondary structure  T
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   210.........220.........230.........240....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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