Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence98.08%DateSun Sep 7 16:58:53 BST 2014
Rank118Aligned Residues158
% Identity11%Templatec1zuiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   123......130.........140.........150.........160.........170.........180..
Predicted Secondary structure 















Query SS confidence 



























































Query Sequence  VCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQNP
Query Conservation    


 



 


 

  

  
                    
 
  
   
      
Alig confidence 





























......................







Template Conservation 
 
 
 
  







  

  
    
 ...................... 
      
Template Sequence  QHLVLIGFMGSGKSSLAQELGLALKLEVLD. . . . . . . . . . . . . . . . . . . . . . TDMIISER
Template Known Secondary structure 
S
TTS
T
......................
Template Predicted Secondary structure 









......................


Template SS confidence 



























































   2.......10.........20.........30. ........
 
   183......190.........200.........210.........220.........230.........240..
Predicted Secondary structure 





























Query SS confidence 



























































Query Sequence  DGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRF
Query Conservation             

       
     
        

 


        
    
  

 
Alig confidence 














































........




Template Conservation                                     

          ........     
Template Sequence  VGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHE. . . . . . . . NLKGL
Template Known Secondary structure  TS

TT
SS


TTGGG
G........GGTTS
Template Predicted Secondary structure 












........
Template SS confidence 



























































   40.........50.........60.........70.........80...... ...90.
 
   243......250.........260.........270.........280.........290.........300..
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  AFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCPLVCGKAIQLMDKSSRVRYS
Query Conservation     
 
           
                            
             
Alig confidence 















....







































Template Conservation       
         
....                                  

    
Template Sequence  GTTFYLKMDFETLIKR. . . . LNQREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGG
Template Known Secondary structure 

....






GGGGS
S
SS
Template Predicted Secondary structure 



....















Template SS confidence 



























































   92.......100....... ..110.........120.........130.........140.......
 
   303......310....
Predicted Secondary structure 
Query SS confidence 











Query Sequence  IDQITTMIINER
Query Conservation   
  
  
    
Alig confidence 











Template Conservation   

    

  
Template Sequence  LNNSLKQVLQFI
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 











   150.........160.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D