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Job DescriptionGood_intensive
Confidence99.79%DateSun Sep 7 16:58:53 BST 2014
Rank24Aligned Residues213
% Identity13%Templatec2x8aA_
PDB info PDB header:nuclear proteinChain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.........120.........130.........140.........
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Query Sequence  FAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAER
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Template Sequence  IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN
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TSTT



SSSTTS
TT
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   583......590.........600.........610.........620.........630.........640..
 
   150.........160.........170.........180.........190..... ....200.....
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Query Sequence  ENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVS. . . . TVEFIPPMAS
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Template Sequence  F. . . . ISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPSVRVVNQLLT
Template Known Secondary structure  ....TTTT
SSTTT
ST
TTT


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   643 ......650.........660.........670.........680.........690........
 
   206...210.........220.........230.........240.........250.........260.....
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Query Sequence  LEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMA
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Template Sequence  EMDGLEARQQVFIMAATNRPDIIDPAILRPG. . . . RLDKTLFVGLPPPADRLAILKTITK
Template Known Secondary structure  T

STT
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GGGS
STT....SS


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   708.710.........720.........730........ .740.........750.........760...
 
   266...270.... .....280.........290.........300.........310
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Query Sequence  TEMCKNCHQ. . . . . . . . . . . . . PANFKRCCPLVCGKAIQLMDKSSRVRYSIDQITTMI
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Template Sequence  NGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMLKVSHKHFEEAF
Template Known Secondary structure  TTBTTBB
TT

T
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B
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   764.....770.........780.........790.........800.........810.........820.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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