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Job DescriptionGood_intensive
Confidence99.86%DateSun Sep 7 16:58:53 BST 2014
Rank12Aligned Residues189
% Identity15%Templatec2zamA_
PDB info PDB header:protein transportChain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form
Resolution3.50 Å
Model Dimensions (Å)X:63.734 Y:48.160 Z:42.337

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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Query Sequence  YAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTS
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Template Sequence  LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS
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   139140.........150.........160.........170.........180.........190........
 
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Query Sequence  TYSLPPDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVS. . . . . TVEFIPPMASLEE
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Template Sequence  ISS. . . . . . . . SDLVSSEKLVKNLFQLARENKPSIIFIDEIDSSEAARRIKTEFLVQMQG
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   199200. ........210.........220.........230.........240.........250
 
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Query Sequence  KGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEM
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Template Sequence  VGVDNDGILVLGATNIPWVLDS. . . . . . AIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ
Template Known Secondary structure  SSS

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   265....270.........280...... ...290.........300.........310........
 
   269270.. .......280.........290......
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Query Sequence  CKNC. . . . . . . . . HQPANFKRCCPLVCGKAIQLMDKS
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Template Sequence  NSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK
Template Known Secondary structure  B


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   319320.........330.........340.........350.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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