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Job DescriptionGood_intensive
Confidence99.90%DateSun Sep 7 16:58:53 BST 2014
Rank4Aligned Residues218
% Identity14%Templatec4b4tH_
PDB info PDB header:hydrolaseChain: H: PDB Molecule:26s protease regulatory subunit 7 homolog; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
Resolution7.40 Å
Model Dimensions (Å)X:72.145 Y:51.852 Z:35.373

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8990.........100.........110.........120.........130.........140........
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Query Sequence  RFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAE
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Template Sequence  DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR. . .
Template Known Secondary structure  S
TT
T
T



S
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   210.........220.........230.........240.........250.........260......
 
   149150.........160.........170... ......180.........190......
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Query Sequence  RENTSTYSLPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . . . .
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Template Sequence  . . TDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG
Template Known Secondary structure  ..T
GGGG


SSST
S

TTTSB

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G
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   267..270.........280.........290.........300.........310.........320....
 
   197..200.........210.........220.........230.........240.......
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Query Sequence  . . . . . . . . . VEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMD
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Template Sequence  GDNEVQRTMLELITQLDGF. . . . DPRGNIKVMFATNRPNTLDPALLRPG. . . . RIDRKVE
Template Known Secondary structure  GGGSS....

TTT
S
TTSB
STT....T


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   325....330.........340... ......350.........360......... 370......
 
   248.250.........260.........270.........280 .........290.........
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Query Sequence  IQVMNEYSRDGKLNMAMATEMCKNCHQPANFKR. . . . . . . . CCPLVCGKAIQLMDKSSRV
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Template Sequence  FSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK
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TTS
B
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   377..380.........390.........400.........410.........420.........430......
 
   300.........310.........
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Query Sequence  RYSIDQITTMIINERNRRSN
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Template Sequence  VATEKDFLKAVDKVISGYKK
Template Known Secondary structure  SB


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   437..440.........450......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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