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Job DescriptionGood_intensive
Confidence97.08%DateSun Sep 7 16:58:53 BST 2014
Rank285Aligned Residues187
% Identity13%Templatec3dzdA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   120.........130.........140....... ..150.........160......... 170..
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Query Sequence  IEPVCLLVHGSPGTGKSVATNLIARAIA. . ERENTSTYSLPPDPSHFDGYKQ. . . . . QGV
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Template Sequence  KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTG
Template Known Secondary structure  TS
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   151........160.........170.........180.........190.........200.........210
 
   173......180.........190.........200....... ..210.........220
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Query Sequence  VIMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLE. . . . . . . . . . . . EKGILFTSNYVLA
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Template Sequence  ALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA
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TTTSTGGGS
S

BT






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   211........220.........230.........240.........250.........260.........270
 
   221........230.........240.........250.........260.........270.........280
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Query Sequence  STNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKR
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Template Sequence  TNKNLEEEIKKGNFREDLYYRLS. VFQIYLPPLRER. . . . . . . . . . . . . . . . . . . . . . GK
Template Known Secondary structure  SS
TTSS
T.S


GGGS......................TT
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   271........280.........290... ......300..... ..
 
   281........290...... ...300.........310.........320.........
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Query Sequence  CCPLVCGKAIQLMDKS. SRVRYSIDQITTMIINERNRRSNIGNCMEALFQ
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Template Sequence  DVILLAEYFLKKFAKEYKKNCFELSEETKEYLXKQEWKGNVRELKNLIER
Template Known Secondary structure  TT




B
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TT
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   308.310.........320.........330.........340.........350.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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