Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence95.63%DateSun Sep 7 16:58:53 BST 2014
Rank413Aligned Residues147
% Identity12%Templatec1wf3A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   125....130.........140..... ....150.........160.......
Predicted Secondary structure 





.................





Query SS confidence 




















. . . . . . . . . . . . . . . . .





















Query Sequence  LLVHGSPGTGKSVATNLIARA. . . . . . . . . . . . . . . . . IAERENTSTYSLPPDPSHFDGY
Query Conservation 


 



 


 

  

  .................
                    
Alig confidence 




















.................





















Template Conservation 




 









 
 
 

  

    


     
      

   



     
Template Sequence  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM
Template Known Secondary structure 
STTSSTS

S


SSS



S
TT







Template Predicted Secondary structure 






















Template SS confidence 



























































   10.........20.........30.........40.........50.........60.........
 
   168.170.........180.........190.........200.........210.........220.......
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  KQQGVVIMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTNSSRI
Query Conservation   
  
   
                 

       
     
        

 


    
Alig confidence 



























































Template Conservation                                                     


 



 
Template Sequence  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA
Template Known Secondary structure  STSS
STTS


GGGTTTS

GGG
Template Predicted Secondary structure 






















Template SS confidence 



























































   70.........80.........90.........100.........110.........120.........
 
   228. 230.........240.........250.........260.........270.
Predicted Secondary structure 

..















Query SS confidence 

. .









































Query Sequence  SP. . PTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKN
Query Conservation    ..  
    
  

    
 
           
           
Alig confidence 

..









































Template Conservation      
              
  


  
 

 

   
   
 
  
Template Sequence  AKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGP
Template Known Secondary structure 
SSTSTTS

TT
TT

B

Template Predicted Secondary structure 


















Template SS confidence 













































   130.........140.........150.........160.........170.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D