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Job DescriptionGood_intensive
Confidence99.13%DateSun Sep 7 16:58:53 BST 2014
Rank84Aligned Residues182
% Identity13%Templatec1sxjB_
PDB info PDB header:replicationChain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140.........150.........160. ..
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Query Sequence  HTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP. . SH
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Template Sequence  ETIDRLQQIAKDGNMPH. . MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG
Template Known Secondary structure  S




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STTSSGGG
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S
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   28.30.........40.... .....50.........60.........70.........80.....
 
   164.....170.........180.........190.........200.........210.........220...
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Query Sequence  FDGYKQQGVVIMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTN
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Template Sequence  IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACN
Template Known Secondary structure  T





TT

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   86...90.........100.........110.........120.........130.........140.....
 
   224.....230.........240.........250.........260.........270.........280...
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Query Sequence  SSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCP
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Template Sequence  QSNKIIE. . . . . . PLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAE
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B
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   146...150.. .......160.........170.........180.........190.........
 
   284.....290.....
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Query Sequence  LVCGKAIQLMDK
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Template Sequence  GDMRQAINNLQS
Template Known Secondary structure  T
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   200.........210.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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