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Job DescriptionGood_intensive
Confidence98.78%DateSun Sep 7 16:58:53 BST 2014
Rank98Aligned Residues158
% Identity15%Templatec1ojlD_
PDB info PDB header:response regulatorChain: D: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.........120.........130.........140.........150........
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Query Sequence  KRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLP
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Template Sequence  PAMQHLLNEIAMVAPSDA. . . . . . . TVLIHGDSGTGKELVARALHACSARSDRPLVTLNC
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   146...150.........160... ......170.........180.........190........
 
   159 160.........170... ......180.........190..... ....200.......
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Query Sequence  P. . . . . . . DPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVS. . . TVEFIPPMASLE
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Template Sequence  AALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQ
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   199200.........210.........220.........230.........240.........250........
 
   208 .210.........220.........230.........240.........250........
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Query Sequence  E. . . . . . . . . KGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDG
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Template Sequence  EREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRRED
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   259260.........270.........280.........290.........300.........310........
 
   259260...
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Query Sequence  KLNMA
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Template Sequence  IPLLA
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   319320...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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