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Job DescriptionGood_intensive
Confidence99.63%DateSun Sep 7 16:58:53 BST 2014
Rank33Aligned Residues179
% Identity6%Templatec3pxiB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc
Resolution6.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90.........100.........110.........120.........130.......
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Query Sequence  NNVRWLSIQSKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSV
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Template Sequence  TETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE
Template Known Secondary structure  TTTS
S
TTT
S
TTS
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   494.....500.........510.........520.........530.........540.........550...
 
   138.140.........150.........160.........170.........180.........190......
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Query Sequence  ATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVST.
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Template Sequence  LARALAESIFG. . DEESMIRIDMSEYMEKHSTS. . . . . . LTEKVRRKPYSVVLLDAIEKA
Template Known Secondary structure  S..
TT
GGGG
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   554.....560.... .....570.........580.... .....590.........600.....
 
   197..200.........210.........220.........230.... .....240.....
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Query Sequence  . . . . . VEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAH. . . . . . SDALARRFAFD
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Template Sequence  HPDVFNILLQVLEDGRLTTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEI
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SB



B
TT
SSSTT

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   623......630.........640.........650.........660.........670.........680..
 
   246...250.........260......
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Query Sequence  MDIQVMNEYSRDGKLNMAMAT
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Template Sequence  IVFHEKK. . HLTEIVSLMSDQ
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   709710..... ....720.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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