Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.36%DateSun Sep 7 16:58:53 BST 2014
Rank52Aligned Residues215
% Identity14%Templatec2chvE_
PDB info PDB header:dna-binding proteinChain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140.........150.........160.....
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Query Sequence  HTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFD
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Template Sequence  EVIQRLKGYVERKNIP. . HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG
Template Known Secondary structure  GGGTTTT


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TTSSTT

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   24.....30......... 40.........50.........60.........70.........80.
 
   166...170... ......180.........190.........200.........210.........220....
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Query Sequence  GYKQQGVV. IMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTNS
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Template Sequence  IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY
Template Known Secondary structure  TTTSSS

TTT


TGGGS
TTGGGTSSSSSSS
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   82.......90.........100.........110.........120.........130.........140.
 
   225....230.........240.........250.........260.........270.........280....
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Query Sequence  SRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCPL
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Template Sequence  VSRIIE. . . . . . PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG
Template Known Secondary structure  GGGS
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TTT

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   142..... ..150.........160.........170.........180.........190.....
 
   285....290.........300.........310.........320........
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Query Sequence  VCGKAIQLMDKSSRVRYSIDQITTMIINERNRRSNIGNCMEALF
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Template Sequence  DFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTAL
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   196...200.........210.........220.........230.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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