Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.00%DateSun Sep 7 16:58:53 BST 2014
Rank90Aligned Residues198
% Identity13%Templatec3uk6H_
PDB info PDB header:hydrolaseChain: H: PDB Molecule:ruvb-like 2; PDBTitle: crystal structure of the tip48 (tip49b) hexamer
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   122.......130.........140.........150.........160.........170.........180.
Predicted Secondary structure 















Query SS confidence 



























































Query Sequence  PVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQN
Query Conservation 
  


 



 


 

  

  
                    
 
  
   
     
Alig confidence 

























...






























Template Conservation     


 







 

  

  
 ...                               
Template Sequence  IRAVLIAGQPGTGKTAIAMGMAQALG. . . PDTPFTAIAGSEIFSLEMSKTEALTQAFRRS
Template Known Secondary structure 

STTSS
...SS

GGGGS
SSS
S
Template Predicted Secondary structure 










...









Template SS confidence 



























































   63......70.........80........ .90.........100.........110.........
 
   182.......190...... ...200.........210.
Predicted Secondary structure 







..............................






Query SS confidence 














. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .














Query Sequence  PDGADMKLFCQMVST. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VEFIPPMASLEEKGI
Query Conservation              

 ..............................      
     
  
Alig confidence 














..............................














Template Conservation            
                              
    
       
     
Template Sequence  IGVTVSLHEIDVINSFSEIKSEVREQINAKVAEWIPGVLFIDEVHMLDIESFSFLNRALE
Template Known Secondary structure  BB


BT







B
SGGGSBTT
Template Predicted Secondary structure 




























Template SS confidence 



























































   127..130.........140.........150.........160.........170.........180......
 
   212.......220.........230.... .....240.........250.........260.....
Predicted Secondary structure 












......







Query SS confidence 






















. . . . . .






























Query Sequence  LFTSNYVLASTNSSRISPPTVAH. . . . . . SDALARRFAFDMDIQVMNEYSRDGKLNMAMA
Query Conservation        

 


        
  ......  
  

    
 
           
     
Alig confidence 






















......








.




















Template Conservation                                        .                     
Template Sequence  SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL. IVSTTPYSEKDTKQILRIRCE
Template Known Secondary structure 
TT

S
S
BTSS
TT

TT.



Template Predicted Secondary structure 












.







Template SS confidence 



























































   318.320.........330.........340.........350..... ....360.........370......
 
   266...270.... .....280.........290.........300.........310......
Predicted Secondary structure 








.........






Query SS confidence 








. . . . . . . . .









































Query Sequence  TEMCKNCHQ. . . . . . . . . PANFKRCCPLVCGKAIQLMDKSSRVRYSIDQITTMIINERNR
Query Conservation           .........              
              
  
  
      
Alig confidence 








.........









































Template Conservation               
         
    

  
   
       
   

  
  
    
Template Sequence  EEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDE
Template Known Secondary structure  TT

B
S
TT
SSB
S

Template Predicted Secondary structure 

















Template SS confidence 



























































   377..380.........390.........400.........410.........420.........430......
 
   317..320...
Predicted Secondary structure 
Query SS confidence 






Query Sequence  RSNIGNC
Query Conservation     
   
Alig confidence 






Template Conservation    
   
Template Sequence  SRSTQYM
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 






   437..440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D