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Job DescriptionGood_intensive
Confidence99.89%DateSun Sep 7 16:58:53 BST 2014
Rank7Aligned Residues225
% Identity12%Templatec4b4tI_
PDB info PDB header:hydrolaseChain: I: PDB Molecule:26s protease regulatory subunit 4 homolog; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
Resolution7.40 Å
Model Dimensions (Å)X:59.562 Y:55.412 Z:54.043

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   86...90.........100.........110.........120.........130.........140.....
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Query Sequence  QSKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARA
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Template Sequence  SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ
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GGGT
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SSSTTTT
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   180.........190.........200.........210.........220.........230.........
 
   146...150.........160.........170... ......180.........190......
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Query Sequence  IAERENTSTYSLPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . .
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Template Sequence  . . . . . TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS
Template Known Secondary structure  .....T
SGGG

SSSST
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S
S
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   240.........250.........260.........270.........280.........290....
 
   197..200.........210.........220.........230.........240........
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Query Sequence  . . . . . . . . VEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDI
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Template Sequence  NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPG. . . . RIDRKILF
Template Known Secondary structure  S
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SSSS
STT

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   295....300.........310.........320.........330.........340.. .......350
 
   249250.........260.........270.........280 .........290.........300
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Query Sequence  QVMNEYSRDGKLNMAMATEMCKNCHQPANFKR. . . . . . . . CCPLVCGKAIQLMDKSSRVR
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Template Sequence  ENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQ
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TTS
B
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S

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   351........360.........370.........380.........390.........400.........410
 
   301........310.........
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Query Sequence  YSIDQITTMIINERNRRSN
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Template Sequence  VTAEDFKQAKERVMKNKVE
Template Known Secondary structure  B


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   411........420.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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