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Job DescriptionGood_intensive
Confidence99.88%DateSun Sep 7 16:58:53 BST 2014
Rank9Aligned Residues215
% Identity17%Templatec4b4tM_
PDB info PDB header:hydrolaseChain: M: PDB Molecule:26s protease regulatory subunit 6a; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
Resolution7.40 Å
Model Dimensions (Å)X:41.510 Y:68.156 Z:40.698

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140......
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Query Sequence  SKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAI
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Template Sequence  YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ.
Template Known Secondary structure  GGGS
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   180.........190.........200.........210.........220.........230........
 
   147..150.........160.........170... ......180.........190......
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Query Sequence  AERENTSTYSLPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . .
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Template Sequence  . . . . TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE
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   239240.........250.........260.........270.........280.........290....
 
   197..200.........210.........220.........230.........240.........
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Query Sequence  . . . . . . . VEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQ
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Template Sequence  KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSG. . . . RLDRKIEFP
Template Known Secondary structure  GGTTTTS
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   295....300.........310.........320.........330.........340. ........350
 
   250.........260.........270.........280 .........290.........300.
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Query Sequence  VMNEYSRDGKLNMAMATEMCKNCHQPANFKR. . . . . . . . CCPLVCGKAIQLMDKSSRVRY
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Template Sequence  LPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSV
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   351........360.........370.........380.........390.........400.........410
 
   302.......310
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Query Sequence  SIDQITTMI
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Template Sequence  KHEDFVEGI
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   411........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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