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Job DescriptionGood_intensive
Confidence98.83%DateSun Sep 7 16:58:53 BST 2014
Rank95Aligned Residues200
% Identity16%Templatec1xxhB_
PDB info PDB header:transferaseChain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex
Resolution3.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   122.......130.........140.........150.........160.........170
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Query Sequence  PVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDGYKQQ. . . . . . . . . . .
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Template Sequence  HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS
Template Known Secondary structure 
S

STTSSS
TT
S
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S
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   38.40.........50.........60.........70.........80.........90.......
 
   171........180.. .......190.........200.........210.........220...
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Query Sequence  . . GVVIMDDLNQNP. . . . . DGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTN
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Template Sequence  RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT
Template Known Secondary structure  STTTTT


S
SSSS

TGGG

S

TT

S
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   98.100.........110.........120.........130.........140.........150.......
 
   224.....230.........240.........250.........260.........270.........280...
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Query Sequence  SSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCP
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Template Sequence  DPQKLPV. . . . . . TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE
Template Known Secondary structure 
TTSS
......TS




TTT

B
S
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   158.160.... .....170.........180.........190.........200.........210.
 
   284.....290..... ....300.........310.........320.........
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Query Sequence  LVCGKAIQLMDK. . . SSRVRYSIDQITTMIINERNRRSNIGNCMEALFQ
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Template Sequence  GSLRDALSLTDQAIASGDGQVSTQAVSAML. . GTLDDDQALSLVEAMVE
Template Known Secondary structure  S
TT
B
S..

SS
TT
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   212.......220.........230.........240. ........250........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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