Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.38%DateSun Sep 7 16:58:53 BST 2014
Rank50Aligned Residues191
% Identity14%Templatec1in8A_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  QKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP
Query Conservation                   
  
  


 



 


 

  

  
               
Alig confidence 



























































Template Conservation 
     
   
            


 







 

  

  
      
        
Template Sequence  ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ
Template Known Secondary structure  T




SSTTSST

TTT

S
Template Predicted Secondary structure 























Template SS confidence 



























































   31........40.........50.........60.........70.........80.........90
 
   162.......170.........180.........190..... ....200.........210........
Predicted Secondary structure 










...










Query SS confidence 

































. . .






















Query Sequence  SHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVS. . . TVEFIPPMASLEEKGILFTSNYV
Query Conservation       
 
  
   
                 

...       
     
        
Alig confidence 


............


















...






















Template Conservation     ............           

  


  
       
   
            
Template Sequence  GDM. . . . . . . . . . . . AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIQPFTL
Template Known Secondary structure  ............T

TT
TGGG

S






Template Predicted Secondary structure  ............












Template SS confidence 



























































   91.. ......100.........110.........120.........130........
 
   219220.........230.........240.........250.........260.........270........
Predicted Secondary structure 

























Query SS confidence 



























































Query Sequence  LASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANF
Query Conservation 
 


        
    
  

    
 
           
                  
Alig confidence 











......









































Template Conservation              ......                                          
Template Sequence  VGATVRSGLLSS. . . . . . PLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEM
Template Known Secondary structure  S
GGGS
......TT
S




TT

B
Template Predicted Secondary structure 








......












Template SS confidence 



























































   154.....160..... ....170.........180.........190.........200.......
 
   279280 .........290.........300.........310
Predicted Secondary structure  ........






Query SS confidence 

. . . . . . . .





























Query Sequence  KR. . . . . . . . CCPLVCGKAIQLMDKSSRVRYSIDQITTMI
Query Conservation    ........        
              
  
  
Alig confidence 

........





























Template Conservation 
     
  
    

              
    
    
Template Sequence  IAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTM
Template Known Secondary structure  TSTT
T
SSB
Template Predicted Secondary structure 










Template SS confidence 







































   208.210.........220.........230.........240.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D