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Job DescriptionGood_intensive
Confidence99.77%DateSun Sep 7 16:58:53 BST 2014
Rank27Aligned Residues203
% Identity15%Templatec3h4mC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: aaa atpase domain of the proteasome- activating nucleotidase
Resolution3.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110.........120.........130.........140.........150.........160......
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Query Sequence  TINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFDG
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Template Sequence  PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE. . . . . TNATFIRVVGSELVKK
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   189190.........200.........210.........220....... ..230.........240...
 
   167..170... ......180.........190..... ....200.........
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Query Sequence  YKQQGVV. IMDDLNQNPDGADMKLFCQMVS. . . . . . . . . . . . . . . . TVEFIPPMASLEEK
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Template Sequence  FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG
Template Known Secondary structure  STTTTTT
S
GGGTSB

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STTTS
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   244.....250.........260.........270.........280.........290.........300...
 
   210.........220.........230.........240.........250.........260.........
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Query Sequence  GILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMC
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Template Sequence  FDARGDVKIIGATNRPDILDPAILRPG. . . . RFDRIIEVPAPDEKGRLEILKIHTRKMNL
Template Known Secondary structure  S
SSSSSSGGGB
STT....S




TTTTS
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   304.....310.........320.........330 .........340.........350.........
 
   270.........280 .........290.........300.........310........
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Query Sequence  KNCHQPANFKR. . . . . . . . CCPLVCGKAIQLMDKSSRVRYSIDQITTMIINERNRRS
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Template Sequence  AEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKK
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TTSTT

TT
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T
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   360.........370.........380.........390.........400.........410......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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