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Job DescriptionGood_intensive
Confidence99.81%DateSun Sep 7 16:58:53 BST 2014
Rank21Aligned Residues202
% Identity16%Templatec2r65A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.......
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Query Sequence  AKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSL
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Template Sequence  KEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE. . . . . AHVPFFS
Template Known Secondary structure  TTS
TTT



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   179180.........190.........200.........210.........220...... ...230...
 
   158.160.........170... ......180.........190..... ....200........
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Query Sequence  PPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVS. . . . . . . . TVEFIPPMASLEE
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Template Sequence  MGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKNDEREQTLNQLLAEMDG
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TGGGGS

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STTT
STTGGGT




STTTSSSTT
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   234.....240.........250.........260.........270.........280.........290...
 
   209210.........220.........230.........240.........250.........260........
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Query Sequence  KGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEM
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Template Sequence  FGSENAPVIVLAATNRPEILDPALMRPG. . . . RFDRQVLVDKPDFNGRVEILKVHIKGVK
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GGGGSTT....SS


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   304.....310.........320.........330. ........340.........350.........
 
   269270.........280 .........290.........300........
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Query Sequence  CKNCHQPANFKR. . . . . . . . CCPLVCGKAIQLMDKSSRVRYSIDQITT
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Template Sequence  LANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKE
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   360.........370.........380.........390.........400.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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