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Job DescriptionGood_intensive
Confidence98.95%DateSun Sep 7 16:58:53 BST 2014
Rank92Aligned Residues171
% Identity12%Templatec1sxjD_
PDB info PDB header:replicationChain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   119120.........130.........140.........150. ........160.........170......
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Query Sequence  RIEPVCLLVHGSPGTGKSVATNLIARAIAEREN. . TSTYSLPPDPSHFDGYKQQGVVIMD
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Template Sequence  SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFA
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   55....60.........70.........80.........90.........100.........110....
 
   177..180.........190.........200.........210.........220......
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Query Sequence  . . . . . . . . . . DLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTNSSR
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Template Sequence  RLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVT
Template Known Secondary structure  S





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   115....120.........130.........140.........150.........160.........170....
 
   227..230.........240.........250.........260.........270.........280......
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Query Sequence  ISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCPLVC
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Template Sequence  RIID. . . . . . PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL
Template Known Secondary structure  GS
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   175... .180.........190.........200.........210.........220........
 
   287..290.....
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Query Sequence  GKAIQLMDK
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Template Sequence  RRGITLLQS
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   229230.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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