Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.34%DateSun Sep 7 16:58:53 BST 2014
Rank57Aligned Residues185
% Identity14%Templatec2chgB_
PDB info PDB header:dna-binding proteinChain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2
Resolution2.1 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   119120.........130.........140.........150.........160.... .....170.......
Predicted Secondary structure 















.


Query SS confidence 













































.












Query Sequence  RIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHF. DGYKQQGVVIMDD
Query Conservation 
  
  


 



 


 

  

  
                  .  
 
  
   
 
Alig confidence 













































.












Template Conservation         

 

 
 


 

  

 
                                 
Template Sequence  RKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR
Template Known Secondary structure  TT


S
TTSSGGGTGGGTT
TT
T
Template Predicted Secondary structure 































Template SS confidence 



























































   35....40.........50.........60.........70.........80.........90....
 
   178.180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  LNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDA
Query Conservation                  

       
     
        

 


        
    
Alig confidence 




















































......
Template Conservation              


                         

           ...... 
Template Sequence  TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE. . . . . . P
Template Known Secondary structure  S

STT
S
TGGGS
TTTS
GGGS
......
Template Predicted Secondary structure 

























......
Template SS confidence 



























































   95....100.........110.........120.........130.........140....... .
 
   238.240.........250.........260.........270 .........280.........290.....
Predicted Secondary structure 












.



.
Query SS confidence 
































.
























.
Query Sequence  LARRFAFDMDIQVMNEYSRDGKLNMAMATEMCK. NCHQPANFKRCCPLVCGKAIQLMDK.
Query Conservation    

    
 
           
          .                  
      .
Alig confidence 




.


























.
























.
Template Conservation 
  
 .               

               
  
     



 


 
  
Template Sequence  IQSRC. AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA
Template Known Secondary structure  T.




T

TT
Template Predicted Secondary structure  .















Template SS confidence 



























































   149150... ......160.........170.........180.........190.........200.......
 
   296...300.........310
Predicted Secondary structure  .






Query SS confidence  .














Query Sequence  . SSRVRYSIDQITTMI
Query Conservation  .        
  
  
Alig confidence  .














Template Conservation        
    
  
 
Template Sequence  AAIGEVVDADTIYQIT
Template Known Secondary structure  TT
S
Template Predicted Secondary structure 




Template SS confidence 















   208.210.........220...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D