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Job DescriptionGood_intensive
Confidence99.78%DateSun Sep 7 16:58:53 BST 2014
Rank25Aligned Residues191
% Identity16%Templatec3vfdA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:spastin; PDBTitle: human spastin aaa domain
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.......
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Query Sequence  AKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSL
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Template Sequence  KQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS
Template Known Secondary structure  T
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GGG


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S

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   351........360.........370.........380.........390.........400.........410
 
   158.160.........170.........180.........190..... ....200........
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Query Sequence  PPDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVS. . . . . . . . . TVEFIPPMASLEE
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Template Sequence  LGEKL. . . . . . . . . . . VRALFAVARELQPSIIFIDQVDSLLDASRRLKTEFLIEFDGV. .
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...........SSSTGGGG

T..
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   411.... ....420.........430.........440.........450.......
 
   209210.........220.........230.........240.........250.........260........
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Query Sequence  KGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEM
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Template Sequence  . . . . . QRVLVMGATNRPQELDE. . . . . . AVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG
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S
GGG

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   473......480......... 490.........500.........510.........520.
 
   269270.... .....280.........290.........300 .........310
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Query Sequence  CKNCHQ. . . . . . . . . PANFKRCCPLVCGKAIQLMDKSSRVR. . . . . . . . . YSIDQITTMI
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Template Sequence  SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPENMSASEMRNIRLSDFTESL
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S
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   528.530.........540.........550.........560.........570.........580.......
 
   311.
Predicted Secondary structure 
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Query Sequence  IN
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Template Sequence  KK
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

   591.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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