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Job DescriptionGood_intensive
Confidence98.74%DateSun Sep 7 16:58:53 BST 2014
Rank101Aligned Residues215
% Identity12%Templatec2v1uA_
PDB info PDB header:replicationChain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
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Query Sequence  QKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDP
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Template Sequence  EAELRRLAEVLAPALRGEKPS. NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIY
Template Known Secondary structure  TTGGGTSS



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B
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   37..40.........50....... ..60.........70.........80.........90.....
 
   162.......170.........180....... ..190........
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Query Sequence  SHFDGYKQQGVVIMDDLNQNPDGADM. . . . . . . . . . . . . . . . . . . . . . . KLFCQMVSTVE
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Template Sequence  VNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLP
Template Known Secondary structure  TTTS
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   96...100.........110.........120.........130.........140.........150.....
 
   199200........ .210.........220.........230.........240.........250......
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Query Sequence  FIPPMASLEE. . KGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSR
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Template Sequence  KRPGGQDLLYRITRINQELVSLVGITNSLGFVENLEPR. . VKSSLGEVELVFPPYTAPQL
Template Known Secondary structure  STTGGG



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   156...160.........170.........180.........190... ......200.........210...
 
   257..260.........270.........280.... .....290.........300...
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Query Sequence  DGKLNMAMATEMCKNCHQPANFKRCCPL. . . . . . . . . . . . . VCGKAIQLMDKSSRVRYSI
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Template Sequence  RDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRR
Template Known Secondary structure  B
TTTB
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   219220.........230.........240.........250.........260.........270........
 
   304.....310.........
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Query Sequence  DQITTMIINERNRRSN
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Template Sequence  EHVYSARAEIERDRVS
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   279280.........290....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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