Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence99.76%DateSun Sep 7 16:58:53 BST 2014
Rank28Aligned Residues217
% Identity14%Templatec4lcbA_
PDB info PDB header:protein transportChain: A: PDB Molecule:cell division protein cdvc, vps4; PDBTitle: structure of vps4 homolog from acidianus hospitalis
Resolution2.08 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 


















Query SS confidence 



























































Query Sequence  AKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSL
Query Conservation     
                 
  
  


 



 


 

  

  
           
Alig confidence 

















..



























.....






Template Conservation 
  
   
          ..       


 







 

  

  .....       
Template Sequence  KEALKEAIIYPSKRPDLF. . PLGWPRGILLYGPPGNGKTMLAAAVANE. . . . . IDSYFIH
Template Known Secondary structure  T
GGG
..TT


SSSSSSS.....TT
Template Predicted Secondary structure 
..











.....





Template SS confidence 



























































   106...110.........120... ......130.........140.........150. .......
 
   158.160.........170......... 180.........190.........200.........210...
Predicted Secondary structure 



....
















Query SS confidence 





















. . . .

































Query Sequence  PPDPSHFDGYKQQGVVIMDDLN. . . . QNPDGADMKLFCQMVSTVEFIPPMASLEEKGILF
Query Conservation           
 
  
   
   ....              

       
     
    
Alig confidence 





















....















.
















Template Conservation                                    

 


 
.          
      
Template Sequence  VDAASIMSKGEAEKNVAKIFNTAREYSKKDNKPAIIFVDEID. ALLVRVRNQFLKEMDGI
Template Known Secondary structure  TT

T

TGG.GG


Template Predicted Secondary structure 








.








Template SS confidence 



























































   159160.........170.........180.........190.........200 .........210.......
 
   214.....220.........230.........240.........250.........260.........270...
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  TSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCH
Query Conservation      

 


        
    
  

    
 
           
             
Alig confidence 
















......




































Template Conservation       
 


       ...... 
            
    
                 
Template Sequence  MMVYVIGATNKPWRLDE. . . . . . PFLRRFQKRIYVPLPDFNQRLALFKYYTSKVKLGNVD
Template Known Secondary structure 

S
GGGS
......TT






TTS
B
S

Template Predicted Secondary structure 










......














Template SS confidence 



























































   230.........240...... ...250.........260.........270.........280...
 
   274 .....280.........290...... ...300.........310.... .
Predicted Secondary structure 
.......
.......





....
Query SS confidence 
. . . . . . .





















. . . . . . .

















. . . .
Query Sequence  Q. . . . . . . PANFKRCCPLVCGKAIQLMDKS. . . . . . . SRVRYSIDQITTMIINER. . . . N
Query Conservation   .......              
       .......       
  
  
    .... 
Alig confidence 
.......





















.......

















....
Template Conservation     

  
      

  
   
   
              
   
   

    

   
Template Sequence  LQELAKMTEGYSASDIRDIVQSAHMRVVKEMFEKNLSEPREITMDDFKEVLKIRKPSVNQ
Template Known Secondary structure  TTT

TT
SS


B



SS
Template Predicted Secondary structure 



















Template SS confidence 



























































   290.........300.........310.........320.........330.........340.........
 
   316...320........
Predicted Secondary structure 
Query SS confidence 












Query Sequence  RRSNIGNCMEALF
Query Conservation      
      

Alig confidence 












Template Conservation 
 
         
Template Sequence  ELLKAYEAWTEKF
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 












   350.........360..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D