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Job DescriptionGood_intensive
Confidence99.89%DateSun Sep 7 16:58:53 BST 2014
Rank5Aligned Residues216
% Identity13%Templatec4b4tK_
PDB info PDB header:hydrolaseChain: K: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
Resolution7.40 Å
Model Dimensions (Å)X:63.587 Y:52.455 Z:45.210

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   86...90.........100.........110.........120.........130.........140.....
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Query Sequence  QSKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARA
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Template Sequence  TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS
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   170.........180.........190.........200.........210.........220.........
 
   146...150.........160.........170... ......180.........190......
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Query Sequence  IAERENTSTYSLPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . .
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Template Sequence  . . . . . TKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA
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   230.........240.........250.........260.........270.........280....
 
   197..200.........210.........220.........230.........240........
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Query Sequence  . . . . . . . . VEFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDI
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Template Sequence  QTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPG. . . . RLDRKIEF
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   285....290.........300.........310.........320.........330.. .......340
 
   249250.........260.........270.... .....280.........290.........
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Query Sequence  . QVMNEYSRDGKLNMAMATEMCKNCHQ. . . . . . . . PANFKRCCPLVCGKAIQLMDKSSRV
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Template Sequence  PSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY
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   341........350.........360.........370.........380.........390.........400
 
   300.........310
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Query Sequence  RYSIDQITTMI
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Template Sequence  VILQSDLEEAY
Template Known Secondary structure  SB
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   401........410.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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