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Job DescriptionGood_intensive
Confidence99.89%DateSun Sep 7 16:58:53 BST 2014
Rank8Aligned Residues212
% Identity13%Templatec4b4tL_
PDB info PDB header:hydrolaseChain: L: PDB Molecule:26s protease subunit rpt4; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
Resolution7.40 Å
Model Dimensions (Å)X:52.316 Y:72.185 Z:38.756

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110......... 120.........130.........140.........150......
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Query Sequence  AKRIQKLEHTINNYIQFKSKHR. IEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYS
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Template Sequence  IRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT. . . . . IGANFI
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   190.........200.........210.........220.........230........ .240....
 
   157..160.........170... ......180.........190...... ...
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Query Sequence  LPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . . . . . . . . . VEF
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Template Sequence  FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRT
Template Known Secondary structure  GGGT

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   245....250.........260.........270.........280.........290.........300....
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  IPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGK
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Template Sequence  LMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPG. . . . RLDRKVEIPLPNEAGRLEI
Template Known Secondary structure  SSS
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   305....310.........320.........330.........340. ........350.........360
 
   260.........270.........280.... .....290.........300.........310.
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Query Sequence  LNMAMATEMCKNCHQPANFKRCCPL. . . . . . . . VCGKAIQLMDKSSRVRYSIDQITTMII
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Template Sequence  FKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR
Template Known Secondary structure  TS
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   361........370.........380.........390.........400.........410.........420
 
   312......
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Query Sequence  NERNRRS
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Template Sequence  KVAEVKK
Template Known Secondary structure  T

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   421......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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