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Job DescriptionGood_intensive
Confidence97.84%DateSun Sep 7 16:58:53 BST 2014
Rank145Aligned Residues292
% Identity11%Templatec3dm5A_
PDB info PDB header:rna binding protein, transport proteinChain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
Resolution2.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70........
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Query Sequence  EWVSNKISKFIDWLKEKIIPQARDKLEFVTKLRQLEMLENQISTIHQSCPSQEHQEILFN
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Template Sequence  DNLGKALANTLKKIARASSVDEALIKELVRDI. . . . . . . . QRALIQADVNVRLVLQLTRE
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   4.....10.........20.........30..... ....40.........50.....
 
   7980....... ..90.........100.........110.........120.........130.......
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Query Sequence  NVRWLSIQS. KRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSV
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Template Sequence  IQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTT
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TT

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   56...60.........70.........80.........90.........100.........110.....
 
   138.140.........150.........160.........170.........180.........190.......
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Query Sequence  ATNLIARAIAERENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVSTV
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Template Sequence  TVAKLARYFQKRGYKVGVVCS. . . . . . DTWRPGAY. . . HQLRQLLDRYHIEVFGNPQEKD
Template Known Secondary structure  TTT


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SST...GGGT


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   116...120.........130...... ...140.... .....150.........160......
 
   198.200.........210.........220.........230.........240.........250.......
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Query Sequence  EFIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRD
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Template Sequence  AIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ
Template Known Secondary structure  TT
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SGGGGG
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   167..170.........180.........190.........200.........210.........220......
 
   258.260.........270.........280.........290........ .300...
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Query Sequence  GKLNMAMATEMCKNCHQPANFKRCCPLVCGKAIQLMDKSSR. . . . . . . . . . . . . . VRYSI
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Template Sequence  QAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDP
Template Known Secondary structure  GS
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   227..230.........240.........250.........260.........270.........280......
 
   304.....310.........320.......
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Query Sequence  DQITTMIINERNRRSNIGNCMEAL
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Template Sequence  PRFVSRLLGLGDIQGLLEKFKELE
Template Known Secondary structure  TTTT
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   287..290.........300.........310
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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