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Job DescriptionGood_intensive
Confidence99.85%DateSun Sep 7 16:58:53 BST 2014
Rank13Aligned Residues193
% Identity15%Templatec1xwiA_
PDB info PDB header:protein transportChain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b
Resolution2.80 Å
Model Dimensions (Å)X:52.034 Y:58.522 Z:53.840

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.........120.........130.........140.........150...
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Query Sequence  YAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTS
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Template Sequence  LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE. . . . ANNS
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GGGS
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   139140.........150.........160.........170.........180.........190 ....
 
   154.....160.........170... ......180.........190...... ..
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Query Sequence  TYSLPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . . . . . . . VE
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Template Sequence  TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRI
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SS

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TSSTTTGGG

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   195....200.........210.........220.........230.........240.........250....
 
   199200.........210.........220.........230.........240.........250........
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Query Sequence  FIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDG
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Template Sequence  KTEFLVQMQGVGVDNDGILVLGATNIPWVLDS. . . . . . AIRRRFEKRIYIPLPEPHARAA
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   255....260.........270.........280...... ...290.........300........
 
   259260.........270.. .......280.........290......
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Query Sequence  KLNMAMATEMCKNC. . . . . . . . . HQPANFKRCCPLVCGKAIQLMDKS
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Template Sequence  MFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK
Template Known Secondary structure  TT

B


T
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T
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   309310.........320.........330.........340.........350.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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