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Job DescriptionGood_intensive
Confidence99.16%DateSun Sep 7 16:58:53 BST 2014
Rank81Aligned Residues183
% Identity11%Templatec1sxjC_
PDB info PDB header:replicationChain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.........140.........150.........160....
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Query Sequence  EHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHF
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Template Sequence  NEVITTVRKFVDEGKLPH. . LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR
Template Known Secondary structure  TT



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   31........40........ .50.........60.........70.........80........
 
   165....170... ......180.........190.........200.........210.........220...
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Query Sequence  DGYKQQGVV. IMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTN
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Template Sequence  GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLAN
Template Known Secondary structure  STS

SSS
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   8990.........100.........110.........120.........130.........140........
 
   224.....230.........240.........250.........260.........270.........280...
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Query Sequence  SSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANFKRCCP
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Template Sequence  YAHKLTP. . . . . . ALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSN
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TTT

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   149150..... ....160.........170.........180.........190.........200..
 
   284.....290.....
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Query Sequence  LVCGKAIQLMDK
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Template Sequence  GDMRRVLNVLQS
Template Known Secondary structure  T
TTT
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   203......210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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