Return to main results Retrieve Phyre Job Id

Job DescriptionGood_intensive
Confidence98.60%DateSun Sep 7 16:58:53 BST 2014
Rank105Aligned Residues188
% Identity13%Templatec2gxaA_
PDB info PDB header:replication/dnaChain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70.........80.........90.........100.......
Predicted Secondary structure 



Query SS confidence 



























































Query Sequence  TKLRQLEMLENQISTIHQSCPSQEHQEILFNNVRWLSIQSKRFAPLYAVEAKRIQKLEHT
Query Conservation                              
                        
      
Alig confidence 



























































Template Conservation   
    
     
    
      
    
            
  
   
  
      
Template Sequence  SQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF
Template Known Secondary structure 
S


S


TT

Template Predicted Secondary structure 















Template SS confidence 



























































   353......360.........370.........380.........390.........400.........410..
 
   108.110.........120.........130.........140.........150........
Predicted Secondary structure 


















.........
Query SS confidence 


















































. . . . . . . . .
Query Sequence  INNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLP. . . . . . . . .
Query Conservation             
  
  


 



 


 

  

  
            .........
Alig confidence 







.









































.........
Template Conservation     
   
.
  



 
   


 



 

 

   
 
  

  
  
 
 
  
 
Template Sequence  INALKLWL. KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLAD
Template Known Secondary structure  .TT
TT


SSSSSTT


TTS
TTS
TTSGGGT
Template Predicted Secondary structure  .

























Template SS confidence 



























































   413......420 .........430.........440.........450.........460.........470.
 
   159160.........170....... ..180.........190.........200.........210.......
Predicted Secondary structure 



.


















Query SS confidence 


















.







































Query Sequence  PDPSHFDGYKQQGVVIMDD. LNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNY
Query Conservation          
 
  
   
 .                

       
     
        
Alig confidence 


















.
























.............

Template Conservation    
 
 

         
  

 



  
 

 
 
    
   .............

Template Sequence  TRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAP. . . . . . . . . . . . . PL
Template Known Secondary structure 
S
S

TTSS


SSS




.............
Template Predicted Secondary structure 






















.............
Template SS confidence 



























































   472.......480.........490.........500.........510...... ..
 
   218.220.........230.........240.. .......250...
Predicted Secondary structure 











.




Query SS confidence 
























.










Query Sequence  VLASTNSSRISPPTVAHSDALARRF. AFDMDIQVMNE
Query Conservation 

 


        
    
  

 .   
 
     
Alig confidence 


















....

.










Template Conservation 




 

   
    
  ....
   
 
  



 
Template Sequence  LVTSNIDVQAEDRYLYLHS. . . . RVQTFRFEQPCTDE
Template Known Secondary structure  SS
TTT
STTT....T


S




Template Predicted Secondary structure 















....








Template SS confidence 




































   519520.........530....... ..540.........550.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D