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Job DescriptionGood_intensive
Confidence99.86%DateSun Sep 7 16:58:53 BST 2014
Rank11Aligned Residues186
% Identity18%Templatec1s3sA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
Resolution2.90 Å
Model Dimensions (Å)X:44.195 Y:67.742 Z:38.751

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100....... ..110.........120.........130.........140.........150......
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Query Sequence  AKRIQKLEHT. INNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYS
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Template Sequence  LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE. . . . . TGAFFF
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   213......220.........230.........240.........250.........260. ......
 
   157..160.........170... ......180.........190...... ..
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Query Sequence  LPPDPSHFDGYKQQGVV. IMDDLNQNPDGADMKLFCQMVST. . . . . . . . . . . . . . . . . VE
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Template Sequence  LINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ
Template Known Secondary structure  TS
TTT
STGGGT


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TT
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   268.270.........280.........290.........300.........310.........320.......
 
   199200.........210.........220.........230.........240.........250........
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Query Sequence  FIPPMASLEEKGILFTSNYVLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDG
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Template Sequence  LLTLMDGL. . . . KQRAHVIVMAATNRPNSIDPALRRFG. . . . RFDREVDIGIPDATGRLE
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GGG
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   328.330..... ....340.........350.........360. ........370.........
 
   259260.........270.........280.........290......
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Query Sequence  KLNMAMATEMCKNCHQPANFKRCCPLVCGKAIQLMDKS
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Template Sequence  ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE
Template Known Secondary structure  TTTTS
TT

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   380.........390.........400.........410.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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