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Job DescriptionGood_intensive
Confidence99.26%DateSun Sep 7 16:58:53 BST 2014
Rank70Aligned Residues253
% Identity13%Templatec3m6aC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80.........90.........100.........
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Query Sequence  RQLEMLENQISTIHQSCPSQEHQEILFNNVRWLSIQSKRFAPLYAVEAKRIQKLEHTIN.
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Template Sequence  HVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHH
Template Known Secondary structure  SS


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   264.....270.........280.........290.........300.........310.........320...
 
   110.........120.........130.........140.........150........
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Query Sequence  . . . . . . . . . . . NYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLP
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Template Sequence  GLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGR
Template Known Secondary structure  S
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   324.....330.........340.........350.........360.........370.........380...
 
   159160.........170.........180.........190.........200.........210........
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Query Sequence  PDPSHFDGYKQQGVVIMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYV
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Template Sequence  IIQGMKKAGKLNPVFLLDEIDKMSA. . . . . . MLEVLDPEQNSSFSDHYIEETFDLSKVLF
Template Known Secondary structure  TT
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   404.....410.........420........ .430.........440.........450.......
 
   219220.........230.........240.........250.........260.........270........
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Query Sequence  LASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQPANF
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Template Sequence  IATANNLATIPG. . . . . . PLRDRMEI. INIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSN
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   467..470........ .480...... ...490.........500.........510.........
 
   279280.........290.........300.........310.......
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Query Sequence  KRCCPLVCGKAIQLMDKSSRVRYSIDQITTMIINERNRR
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Template Sequence  LQLRDQAILDIIRYYTREAGVRS. LERQLAAICRKAAKA
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   520.........530.........540.. .......550.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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