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Job DescriptionGood_intensive
Confidence99.27%DateSun Sep 7 16:58:53 BST 2014
Rank68Aligned Residues182
% Identity10%Templatec1sxjE_
PDB info PDB header:replicationChain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140.........150.........160.....
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Query Sequence  HTINNYIQFKSKHRIEPVCLLVHGSPGTGKSVATNLIARAIAERENTSTYSLPPDPSHFD
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Template Sequence  ELTNFLKSLSDQPRDLP. HLLLYGPNGTGKKTRCMALLESIFGPGVYRNVVSSPYHLEIT
Template Known Secondary structure  TTTT
TT


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   21........30....... ..40.........50.........60.........70.........
 
   166...170... ......180.........190.........200.........210.........220....
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Query Sequence  GYKQQGVV. IMDDLNQNPDGADMKLFCQMVSTVEFIPPMASLEEKGILFTSNYVLASTNS
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Template Sequence  PSNDRIVIQELLKEVAQMEQRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS
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   98.100.........110.........120.........130.........140.........150.......
 
   225....230.........240.........250.........260.........270..... ....280..
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Query Sequence  SRISPPTVAHSDALARRFAFDMDIQVMNEYSRDGKLNMAMATEMCKNCHQP. . ANFKRCC
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Template Sequence  MSPIIA. . . . . . PIKSQCL. LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS
Template Known Secondary structure  S
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   174..... 180...... ...190.........200.........210.........220......
 
   283......290.....
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Query Sequence  PLVCGKAIQLMDK
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Template Sequence  NGNLRVSLLMLES
Template Known Secondary structure  TT
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   227..230.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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