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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.54%DateWed Nov 27 10:14:46 GMT 2024
Rank121Aligned Residues242
% Identity17%Templatec1oahB_
PDB info PDB header: reductaseChain: B: PDB Molecule: cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio desulfuricans atcc2 27774: the relevance of the two calcium sites in the structure of the3 catalytic subunit (nrfa).
PDB Entry: PDBe RCSB PDBj
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490.........500. ........510
Predicted Secondary structure 




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Query Sequence  TVDNSCGACHPKQAAEFIKGRDHG. . . . . . . . . . . . . . . . . . . . . . . . . . . RPNHPQSWE
Query Conservation       
  

  
  
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Template Conservation            
  
                                      
       
Template Sequence  TKMSAFKGQFPQQYASYMKNNEDRIMTDYKGSVPYHKNDNVNPLPKGFKHAQPYLKNLWL
Template Known Secondary structure 

TTT
GGG



B
SS
BS


BTT

SS.TTT

TT

TTTT
Template Predicted Secondary structure 
































   511........520 .........530.........
Predicted Secondary structure 

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Query Sequence  GNVSTPWYAE. . . . . . . . . . . . . . . . . . . YYRRGEGYSMVGCDQCHQN. . . . . . . . . . . .
Query Conservation       
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Template Conservation 
           
      
                     
  

           
  
Template Sequence  GYPFMYEYNETRGHTYAIDDFLNIDRINRFAADGKGNLPATCWNCKTPKMMEWVSQYGDK
Template Known Secondary structure  TSGGGT

B



GGG
TTS



TT


SSBGGGGTTT
TTGGG
Template Predicted Secondary structure 












































   540.........550.........560
Predicted Secondary structure  ....................
















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Query Sequence  . . . . . . . . . . . . . . . . . . . . MSSCDDCHSRHRFSAAEARRP. . . . . . . . . . . . . . . . . . .
Query Conservation  .................... 
 
 





 

  




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Template Conservation                       
 
  

                     
          
Template Sequence  FWSMDVNEFRAKDKINAHDETIGCANCHDPATMELRLYSEPLKDWLKRSGKDWQKMSRNE
Template Known Secondary structure  STTSBGGGG
STTT

TTTSSS
GGGTB
TTT

B



TT

GGGS
Template Predicted Secondary structure 






































   561........
Predicted Secondary structure  ...




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Query Sequence  . . . EACSICHMG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ... 

  



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Template Conservation       
  

                  
   
                           
Template Sequence  KRTLVCAQCHVEYYFTHKDNGPAAKPVFPWDNGFNPEDMYQYYKGHGAKGPDGKPGPFVD
Template Known Secondary structure  TTSS

..TTTSSTT



TT
SSTTS.TTS


S
Template Predicted Secondary structure 








































   570.........580.........590.........600.........610.......
Predicted Secondary structure  ............

































Query Sequence  . . . . . . . . . . . . PDHPDWESYSRSKWGVIYETTKERWNWDKNLAEVIPGEDYLAPTCQYC
Query Conservation  ............




 


  



 

       
       
  
 

 






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Template Conservation                
   
    
 
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Template Sequence  WVHAASKVPMIKMQHPEYETFQDGPHGAA. . . . . . . . . . . . . . . . . . . . . . . . GVSCADC
Template Known Secondary structure 
TTT







TTSTTGGG........................T

Template Predicted Secondary structure 




























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   618.620..... ....630.........640.........650.........660.........670...
Predicted Secondary structure 




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Query Sequence  HMYVGNNK. . . . WEMNVETKGIWRMGVIPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSA
Query Conservation 

  
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Template Conservation 


           
    
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Template Sequence  HMQYVREDGKKISSHWMTSPMKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

SSS



S
GGG
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Template Predicted Secondary structure 






















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   674.....680... ......690.. .. .....700.........710.........720.....
Predicted Secondary structure  .


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Query Sequence  ESQEKRRKWV. ELCSKCHSS. RF. . . . . . AGMWLDSLDQYMFESWRRIDEAQLIIEKLFS
Query Conservation 
    
  
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Alig confidence  ........

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Template Conservation  ........     
  

           
   
             
         
  
Template Sequence  . . . . . . . . PEMRACRQCHADKTGEYLRQRVLYTQQKTFDQLLKAQEMSVKAHEAVRLANA
Template Known Secondary structure  ........TT
TTTTTT
TTS
Template Predicted Secondary structure  ........








   726...730.........740.........750.........760.........770.........780....
Predicted Secondary structure  .























































Query Sequence  . ENAIEPPPEKRPPFPLSDLIIKVLGAEKLGAEMYRLFKQTNGHLPVIGPILGAYSIFTQ
Query Conservation  . 


          
  
                  
       
              
Alig confidence  .


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Template Conservation    
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Template Sequence  YEGH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

S.........................................................
Template Predicted Secondary structure 


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   785....790.. .......800.........810.........820.........830.........840
Predicted Secondary structure 





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Query Sequence  NEGNPGGI. . . . EREYAEMWFWSHLQGYKGAAHAQPDISWWWGTAQGVGNLTRIRDEAEK
Query Conservation       
 
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Alig confidence  .......
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Template Conservation  .......                  
           
 
 


      
  
      
Template Sequence  . . . . . . . RAANYEALMAEAREMVRKGQLFWDYVSAENSVGFHNPAKALDTLMTSMECSQK
Template Known Secondary structure  .........TTTSTTTTSSS
Template Predicted Secondary structure  .......











   841........850..
Predicted Secondary structure 






Query Sequence  LRRLKSGSSSGF
Query Conservation 


   
     
Alig confidence 







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Template Conservation          .   
Template Sequence  AVDLATEA. TDF
Template Known Secondary structure  .TTT
Template Predicted Secondary structure  .
Download:Text version FASTA version

No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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