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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.74%DateWed Nov 27 10:14:46 GMT 2024
Rank78Aligned Residues294
% Identity18%Templatec3sxqA_
PDB info PDB header: oxidoreductaseChain: A: PDB Molecule: eight-heme nitrite reductase; PDBTitle: structure of a hexameric multiheme c nitrite reductase from the2 extremophile bacterium thiolkalivibrio paradoxus
PDB Entry: PDBe RCSB PDBj
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   398.400.........410.........420.........430.........440.........450.......
Predicted Secondary structure 


































Query Sequence  LVKYRPDQCVECHEETTPGIVAEWKMSNHANPKKNPHVSAETQEIEALIGKELNNWRPGT
Query Conservation          

 

   




 

  
 

                              
Alig confidence 














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Template Conservation          
  

  ....           ..............................
Template Sequence  LKPVDALQCYDCHTQ. . . . IEDMHVVGKHA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 




TT
....TTSTTT..............................
Template Predicted Secondary structure 




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..............................
   458.460.........470 .........480.........490.........500..
Predicted Secondary structure 








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Query Sequence  KDGVYCSYCHGSD. . . . . . . . . . . HEKLFMPTVDNSCGACHPKQAAEFIKGRDHGR. . . .
Query Conservation     
 
  

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Alig confidence  ..










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Template Conservation  ..   
  

    
                     
  

                   
Template Sequence  . . TVNCVHCHDATEHVETASARRMGERPVTHTSPEACASCHTAQFNSFASVRHESHPREE
Template Known Secondary structure  ..TS
GGGT


SS


S..


GGGGTTT



TTS
TT
B
Template Predicted Secondary structure  ..







































  
Predicted Secondary structure  ............................................................
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  KANPRSRSPKFDTLIGAHGFSLEHAEPRSHAFMLVDHFIVDRAYGGRFQYKSWQNVTDGL
Template Known Secondary structure  SSSTTSS
TTTTSGGGG

B..

GGGSTTTSTT
SSGGGGG
Template Predicted Secondary structure 









































   503......510.........520.........530........
Predicted Secondary structure  ....

















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Query Sequence  . . . . PNHPQSWEGNVSTPWYAEYYRRGEGYSMVGCDQCHQ. . . . . . . . . . . . . . . . . . . .
Query Conservation  ....             
               

  


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Alig confidence  ....



































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Template Conservation                                    
  

                     
Template Sequence  GAVRGAWTVIEDMDPTTSDQRRFLAQTATAANPVCLNCKTQDHILDWAYMGDEHDAAKWA
Template Known Secondary structure 
S
TT





SSTT





GGGGGGT

TTTTSB
GGG


TT
SB
Template Predicted Secondary structure 




















































   539540.........550........
Predicted Secondary structure  .............
















...........................
Query Sequence  . . . . . . . . . . . . . NMSSCDDCHSRHRFSAAEAR. . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  .............
 
 
 





 

  


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Alig confidence  .............



















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Template Conservation                   
  

                                      
Template Sequence  RTSKVVDFARDLHHPVNCYMCHDPHSTEPRVVRDALIHAVVDQGLGTYPYDEAKSEHVTL
Template Known Secondary structure  TTS
TT


SS
GGGTB
TTT

B






T


SSTT
S
Template Predicted Secondary structure 








































   559560.........570
Predicted Secondary structure  ......................






..........................
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . RPEACSICHMGP. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ......................

 

  




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Alig confidence  ......................











..........................
Template Conservation                            
  

                             
Template Sequence  TPVTFQRGGEDFRKIGLLNVADSNLMCGQCHVEYNCNPGFQQSDGAPVGMDDRRTNHFFW
Template Known Secondary structure  TTSS

TTTSS

S

TTT


TTSGGGS

Template Predicted Secondary structure 



















































   571........580.........590.........600
Predicted Secondary structure  ..............................


















Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DHPDWESYSRSKWGVIYETTKERWNWDKNL
Query Conservation  ..............................



 


  



 

       
     
Alig confidence  ..............................














...............
Template Conservation                                            
  ...............
Template Sequence  ANVFDYAEAAKEIDFFDFTHVTTGAPLPKLQHPELETFWGSTHER. . . . . . . . . . . . . . .
Template Known Secondary structure 

TTTTT
B

TTT







TTS...............
Template Predicted Secondary structure 






























...............
   601........610.........620.........630.........640.........650.........660
Predicted Secondary structure 


















































Query Sequence  AEVIPGEDYLAPTCQYCHMYVGNNKWEMNVETKGIWRMGVIPPKEVEFKSGLKDFPYGIK
Query Conservation    
  
 

 








  
    



  
  
                   
    
Alig confidence  .........

























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Template Conservation  .........    
  

                 .........................
Template Sequence  . . . . . . . . . NGVTCADCHMPRVKLENGKEYTMHSP. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .........TT

S
B


TTS

.B.
S
.........................
Template Predicted Secondary structure  .........























.........................
   661........670.........680.........690.........700.........710.........720
Predicted Secondary structure 













Query Sequence  IPPMDKKLEIYSAESQEKRRKWVELCSKCHSSRFAGMWLDSLDQYMFESWRRIDEAQLII
Query Conservation               
    
  
  

  


  

       
  
 
      

   
Alig confidence  ...............












































Template Conservation  ...............          
  

                              
Template Sequence  . . . . . . . . . . . . . . . RTPRDMMNRACLNCHDGWTEAEAEYAIDYIKNYTHGKIMKAEFWL
Template Known Secondary structure  ...............

GGGS




TTSTT

Template Predicted Secondary structure  ...............














   721..... ...730.........740.........750.........760.........770...
Predicted Secondary structure 
.......











































Query Sequence  EKLFSE. . . . . . . NAIEPPPEKRPPFPLSDLIIKVLGAEKLGAEMYRLFKQTNGHLPVIG
Query Conservation    
   .......


          
  
                  
       
   
Alig confidence 





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Template Conservation                .       ......................................
Template Sequence  ARMIDLFPVAKRAG. VSEDVLN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T.

......................................
Template Predicted Secondary structure 

.

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   774.....780.........790.........800.........810.........820.........830...
Predicted Secondary structure 






















Query Sequence  PILGAYSIFTQNEGNPGGIEREYAEMWFWSHLQGYKGAAHAQPDISWWWGTAQGVGNLTR
Query Conservation                  
 

     

     
   

 
  



 
 
       
  
Alig confidence  ................





























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Template Conservation  ................        
               

    ....   
      
Template Sequence  . . . . . . . . . . . . . . . . EVRALHYDAHLHWEWWTAENSVGFHNPDQA. . . . RESLMKSITK
Template Known Secondary structure  ................STTTTTT
....
Template Predicted Secondary structure  ................








....
   834.....840.........850
Predicted Secondary structure 




Query Sequence  IRDEAEKLRRLKSGSSS
Query Conservation 
   
  


   
   
Alig confidence 
















Template Conservation                   
Template Sequence  SKEGVGKLDAAIDAAVA
Template Known Secondary structure 
.
Template Predicted Secondary structure 

Download:Text version FASTA version

No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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