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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.97%DateWed Nov 27 10:14:46 GMT 2024
Rank88Aligned Residues233
% Identity22%Templatec1sddA_
PDB info PDB header: blood clottingChain: A: PDB Molecule: PDBTitle: crystal structure of bovine factor vai
PDB Entry: PDBe RCSB PDBj
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50. ........60.. .......70.........80.....
Predicted Secondary structure 

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Query Sequence  GAVHLEMEAKPLTIE. PRPGVFFDAWG. . . . . . . . . . YCLKGDVPTVPGPVIKVREGTKV
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Template Conservation                                           .....  

 
    
   
Template Sequence  KLRQFYVAAQSIRWNTSFKKIVYREYEAYFQKEKPQSRTSG. . . . . LLGPTLYAEVGDIM
Template Known Secondary structure 




SS



TTT






SS

.....S



TT
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   86...90.........100.........110......... 120.........130.........
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Query Sequence  KILFRNKLTVPASIHPHGVKYTTANVGVNIAGNP. . . . . . ASIVAPGDSRIFEWDTAGTP
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Template Conservation       
           
                            
             
Template Sequence  KVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHS
Template Known Secondary structure 
SSS
B

SS


TTTS


S




TTT
B
TT


GGG
Template Predicted Secondary structure 






































   140 .........150.........160.........170....... ..180.....
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Query Sequence  G. . . . . . . . . TWFYHSYVFERGGEEGLSRGLWGALIVEPVGGDPNPP. . . . . DKEFVVFM
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Template Conservation               
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Template Sequence  GPTHDDPPCLTHIYYSYV. . . NLVEDFNSGLIGPLLICKKGTLTEDGTQKMFEKQHVLMF
Template Known Secondary structure  S

SSS
S

S...SSTT


TT
B
TTSSBSSS





B
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   186...190.........200.........210......... 220.........230...... ...240..
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Query Sequence  HAFNVNGQEYYAFNNKSGDIELMRGDSSAFPGET. WKAKMGDKVRFHLINIT. . EEAHTF
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Template Sequence  AVFDESKSWNQT. . . . . . SSLMYTVNGYVNGTMPDITVCA. . . . . . HLIGMSSGPELFSI
Template Known Secondary structure 
TTSSSS

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SSS

SS






SS......
BB


SSS


Template Predicted Secondary structure 








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   243......250.........260.........270.........280.........290.........300..
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Query Sequence  HTHGHRWLDKSCDKLIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHMMNGMFGIF
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Template Conservation 
  
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Template Sequence  HFNGQVLEQNH. . HKISAITLVSATSTT. . . . . . . . . . . GRWTIASLIPRHFQAGMQAYI
Template Known Secondary structure  B
SSTT
TT..
S


TT

BS...........SS


B

STTTGGGT
B


Template Predicted Secondary structure 




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No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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