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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.44%DateWed Nov 27 10:14:46 GMT 2024
Rank133Aligned Residues180
% Identity17%Templatec2rdzD_
PDB info PDB header: oxidoreductaseChain: D: PDB Molecule: cytochrome c-552; PDBTitle: high resolution crystal structure of the escherichia coli cytochrome c2 nitrite reductase.
PDB Entry: PDBe RCSB PDBj
Resolution1.74 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490.........500 .........510
Predicted Secondary structure 



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Query Sequence  TVDNSCGACHPKQAAEFIKGRDH. . . . . . . . . . . . . . . . . . . . . . . . . . . GRPNHPQSWE
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Template Conservation       
  

                                                  
Template Sequence  AKNETFAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVT
Template Known Secondary structure 

GGGGTTT
GGGG




B
TTTTSGGGT

B



GGG
Template Predicted Secondary structure 

























   511........520.........530.........540. .
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Query Sequence  GNVSTPWYAEYYRRGEGYSMVGCDQCHQNMS. . . . . . . . . . . . . . . . . . . . . . . . . . . . S
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Template Conservation                        
  

                               
 
Template Sequence  DVRETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLG
Template Known Secondary structure  SGGG


SSTT
SSSBGGGGTTT
TSSBTTT

S
S
Template Predicted Secondary structure 












































   543......550........ .560.........570
Predicted Secondary structure 












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Query Sequence  CDDCHSRHRFSAAEAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RPEACSICHMGP. .
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Template Conservation 
  

                                             
  

     
Template Sequence  CADCHNTASPEFAKGKKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
Template Known Secondary structure  B
TTSTT
.

B



TT

GGGS
TTTSS

Template Predicted Secondary structure 

































   571........580......
Predicted Secondary structure  ............................................







Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DHPDWESYSRSKWGVI
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Template Conservation                                               
          
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Template Sequence  DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGK.
Template Known Secondary structure  TTTT


TT
SSTT

S
TTT







S.
Template Predicted Secondary structure 














































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   587..590.........600.........610 .........620. ........630.........640
Predicted Secondary structure 




















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Query Sequence  YETTKERWNWDKNLAEVIPGEDYL. APTCQYCHMYV. . . . . GNNKWEMNVETKGIWRMGV
Query Conservation 
       
       
  
 

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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . NNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFD. . . . .
Template Known Secondary structure  .......................TT.

S

TTS




S
GGG.....
Template Predicted Secondary structure  .......................































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   641........650.........660.........670.........680... ......690.........
Predicted Secondary structure 






























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Query Sequence  IPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSAESQEKRRKWV. ELCSKCHSSRFAGMWL
Query Conservation                 
                 
    
  
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Alig confidence  ........................................


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Template Conservation  ........................................      
  

         
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NFAQQTCANCHTQDDKAALQ
Template Known Secondary structure  ........................................GGGG.TGGGT

S
.
Template Predicted Secondary structure  ........................................








   700.........710 .........720......
Predicted Secondary structure  .
Query Sequence  DSLDQYMFESW. RRIDEAQLIIEKLFSE
Query Conservation     
  
 
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Template Conservation                              
Template Sequence  KVVAERKQSINDDLKIKVEDQLVHAHFE
Template Known Secondary structure  .
Template Predicted Secondary structure 
Download:Text version FASTA version

No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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