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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence100.00%DateWed Nov 27 10:14:46 GMT 2024
Rank68Aligned Residues258
% Identity21%Templatec7kxyA_
PDB info PDB header: blood clottingChain: A: PDB Molecule: PDBTitle: cryo-em structure of human factor va at 4.4 angstrom resolution
PDB Entry: PDBe RCSB PDBj
Resolution4.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50..... ....60.........70.........80........
Predicted Secondary structure 






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Query Sequence  DGAVHLEMEAKPLTIEPRPG. . . . . . . VFFDAWGYCLKGDVPTVPGPVIKVREGTKVKIL
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Template Conservation                                               

      
      
Template Sequence  AQLRQFYVAAQGISWSYRPESVTSFKKIVYREYEPYFKSTISGLLGPTLYAEVGDIIKVH
Template Known Secondary structure 


B






SSSSSS





SSSSS
TTT
S




SS

B


Template Predicted Secondary structure 


























   8990.........100.........110.........120.........130.........140
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Query Sequence  FRNKLTVPASIHPHGVKYTTANVGVNIAGNPASIVAPGDSRIFEWDTAGTPG. . . . . . . .
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Template Sequence  FKNKADKPLSIHPQGIRYSKLSEGASY. . . LDDAVAPGREYTYEWSISEDSGPTHDDPPC
Template Known Secondary structure 




SS




BSSTT

STT



S...SS



TT









TTSS
SSSSSS
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   141........150.........160.........170.. .......180.........190....
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Query Sequence  . TWFYHSYVFERGGEEGLSRGLWGALIVEPVGG. . . . . DPNPPDKEFVVFMHAFNVNGQE
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Template Conservation           ...        
  
 
 
                                
Template Sequence  LTHIYYSHE. . . NLIEDFNSGLIGPLLICKKGTLTEGGTQKTFDKQIVLLFAVFDESKSW
Template Known Secondary structure 


B


S...
TTTTSTT




SSS


SSSS
SSSS


B






TTSST
Template Predicted Secondary structure 


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   195....200.........210....... ..220.........230...... ...240.........250.
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Query Sequence  YYAFNNKSGDIELMRGDSSAFPG. ETWKAKMGDKVRFHLINIT. . EEAHTFHTHGHRWLD
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Template Conservation     ......       

             
        
             
     
Template Sequence  SQS. . . . . . SSLMYTVNGYVNGTMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLEQ
Template Known Secondary structure  T

......SS



STT

TT
S..



SS


SSS




B
SS



B
Template Predicted Secondary structure 


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   252.......260.........270.........280.........290.........300.........310
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Query Sequence  KSCDKLIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHMMNGMFGIFMVEEGKRV
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Template Conservation    ..                      ... 
              
             
Template Sequence  NH. . HKVSAITLVSATSTTANMTVGP. . . EGKWIISSLTPKHLQAGMQAYIDIKNCPKK
Template Known Secondary structure  TT..BB

S



SS

S...





B

STTTTTS













Template Predicted Secondary structure 

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No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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