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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.48%DateWed Nov 27 10:14:46 GMT 2024
Rank120Aligned Residues243
% Identity17%Templatec1qdbA_
PDB info PDB header: oxidoreductaseChain: A: PDB Molecule: cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase
PDB Entry: PDBe RCSB PDBj
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   473......480.........490......... 500.....
Predicted Secondary structure 








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Query Sequence  KLFMPTVDNSCGACHPKQAAEFIKGRD. . . . . . . . . . . . . . . . . . . . . . . . . . . HGRPNH
Query Conservation            
  

  
  
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Template Conservation                    
                   
       
           

Template Sequence  GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGH
Template Known Secondary structure 

TTTT
GGGGGGT
GGGG




B
TTTTSGGGT

B



G
Template Predicted Secondary structure 



































   506...510.........520.........530.........540
Predicted Secondary structure 
















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Query Sequence  PQSWEGNVSTPWYAEYYRRGEGYSMVGCDQCHQNM. . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation            
               

  



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Template Conservation                             
  

           
                
Template Sequence  YYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAKYGSQI
Template Known Secondary structure  GGSGGG


SSTT
SSSBGGGGTTT
T
TBSBGGGGTTT
Template Predicted Secondary structure 







































   541........550......... 560.........
Predicted Secondary structure  ...















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Query Sequence  . . . SSCDDCHSRHRFSAAEARR. . . . . . . . . . . . . . . . . . . . . . . PEACSICHMG. . . . .
Query Conservation  ...
 
 





 

  



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Template Conservation     
 
  

                                      
  

       
Template Sequence  VNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTLVCAQCHVEYYFKK
Template Known Secondary structure 
S
S
B
TTT

B



TT


GGGS
TTSS

Template Predicted Secondary structure 










































   570.
Predicted Secondary structure  ......

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Query Sequence  . . . . . . PD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ......

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Alig confidence  ......

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Template Conservation                    
   
                                     
Template Sequence  TEWKDAKGADKTAMVVTLPWANGVGKDGNAGVEGMIKYYDEINFSDWTHNISKTPMLKAQ
Template Known Secondary structure 
TT




TT
SSBTTB
STT

S
TTT





Template Predicted Secondary structure 















































   572.......580.........590.........600.........610.........620..... ..
Predicted Secondary structure 




































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Query Sequence  HPDWESYSRSKWGVIYETTKERWNWDKNLAEVIPGEDYLAPTCQYCHMYVGNNK. . . . WE
Query Conservation 


 


  



 

       
       
  
 

 








  
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Template Conservation 
   
      
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Template Sequence  HPGFEFWKSGIHGQK. . . . . . . . . . . . . . . . . . . . . . . . GVSCADCHMPYTQEGSVKYSD
Template Known Secondary structure 

ST........................T

S
TT
Template Predicted Secondary structure 














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   628.630 .........640.........650.........660.........670.........680......
Predicted Secondary structure 


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Query Sequence  MNV. ETKGIWRMGVIPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSAESQEKRRKWVELC
Query Conservation 


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Alig confidence 


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Template Conservation 
     
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Template Sequence  HQVKENPL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DSMDQSC
Template Known Secondary structure 
S

S
GG.............................................GGT
Template Predicted Secondary structure 







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   687..690. ........700.........710.........720.........730.........740
Predicted Secondary structure 


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Query Sequence  SKCHS. . . . . . SRFAGMWLDSLDQYMFESWRRIDEAQLIIEKLFSENAIEPPPEKRPPFP
Query Conservation    


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Alig confidence 




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Template Conservation    

                                      
   
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Template Sequence  MNCHRESESKLRGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIEAGA. . . . . . . . . . . .
Template Known Secondary structure  TTT

S
TT
............
Template Predicted Secondary structure 






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   741........750.........760.........770.........780.........790.........800
Predicted Secondary structure 














































Query Sequence  LSDLIIKVLGAEKLGAEMYRLFKQTNGHLPVIGPILGAYSIFTQNEGNPGGIEREYAEMW
Query Conservation    
                  
       
                   
 

     

Alig confidence  ...................................................








Template Conservation  ...................................................         
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SDEELKEVR
Template Known Secondary structure  ...................................................
TTTT
Template Predicted Secondary structure  ...................................................
   801........810.........820.........830.........840.......
Predicted Secondary structure 







Query Sequence  FWSHLQGYKGAAHAQPDISWWWGTAQGVGNLTRIRDEAEKLRRLKSG
Query Conservation       
   

 
  



 
 
       
  
   
  


   
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Template Conservation       
               

       
                
Template Sequence  KLIRHGQFKADMAIAAHGNYFHAPEETLRLLAAGSDDAQKARLLLVK
Template Known Secondary structure  STT
Template Predicted Secondary structure 








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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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