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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.67%DateWed Nov 27 10:14:46 GMT 2024
Rank130Aligned Residues239
% Identity14%Templatec6v0aB_
PDB info PDB header: oxidoreductaseChain: B: PDB Molecule: nitrite reductase (cytochrome; ammonia-forming); PDBTitle: crystal structure of cytochrome c nitrite reductase from the bacterium2 geobacter lovleyi with bound sulfate
PDB Entry: PDBe RCSB PDBj
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490......... 500 ......... 510.........520........
Predicted Secondary structure 



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Query Sequence  TVDNSCGACHPKQAAEFIKGRD. H. . . . GRPNHPQSW. . . . EGNVSTPWYAEYYRRGEGY
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Template Conservation       
  

                                     
            
Template Sequence  IDPAVWGKNYPEEYQTWKDTALPTPEGKSKYKKGNDGGKVYDKLSEYPFIALLFNGWGFG
Template Known Secondary structure 

TTS
GGGS.B.TTS
SS

TTBTT


BSTTTSGGG
Template Predicted Secondary structure 































   529530 .........
Predicted Secondary structure 

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Query Sequence  SM. . . . . . . . . . . . . . . . . . . . . . . . . VGCDQCHQN. . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    ......................... 

  



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Alig confidence 

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Template Conservation                               
  

                          
Template Sequence  IEYNEPRGHVYMMKDQKEIDPSRLKGGGACLTCKTPYAPQLAQKQGVTYFSQSYADAVNQ
Template Known Secondary structure  T

B



GGGS
TTGGGGGGGGGTTT
TTTS
T
Template Predicted Secondary structure 
































   540.........550.........560. .......
Predicted Secondary structure  ........
















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Query Sequence  . . . . . . . . MSSCDDCHSRHRFSAAEARRPE. . . . . . . . . . . . . . . . . . . . . . . ACSICHM
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Template Conservation           
 
  

                                      
  

 
Template Sequence  IPKEHQEMGVACIDCHNNKDMGLKISRGFTLVKALDKMGVDQTKLTNQDKRSLVCAQCHV
Template Known Secondary structure  S
GGGTT

S
GGGTB
TTT

B








T

GGG

TTTTTSS
Template Predicted Secondary structure 





































   569570. ..
Predicted Secondary structure  ......


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Query Sequence  . . . . . . GPD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HP
Query Conservation  ......


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Template Conservation                       
                                    
 
Template Sequence  TYTIPKDANMKSQDVFFPWDESKWGKISIENIIKKMRSDKSYGEWTQAVTGFKMAYIRHP
Template Known Secondary structure 

B

B
TTS
B


B


TT
BTTB

T
GGG


TTT







Template Predicted Secondary structure 














































   574..... 580.........590.........600.........610.........620... ......
Predicted Secondary structure 
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Query Sequence  DWESYS. RSKWGVIYETTKERWNWDKNLAEVIPGEDYLAPTCQYCHMYVGN. . . NKWEMN
Query Conservation 
 


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Template Conservation          
 
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Template Sequence  EFEMYSNQSVHWMAGVS. . . . . . . . . . . . . . . . . . . . . . . . CADCHMPYTKGSKKISDHR
Template Known Secondary structure  TTT
TT

........................S

SS




Template Predicted Secondary structure 













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   630.........640.........650.........660.........670.........680.........
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Query Sequence  VETKGIWRMGVIPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSAESQEKRRKWVELCSKC
Query Conservation 
  
  
                   
                 
    
  
  

  
Alig confidence 






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Template Conservation         .............................................    
  
Template Sequence  IMSPLKN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DFKGCKQC
Template Known Secondary structure 


GGGT.............................................TTTTGGGT
Template Predicted Secondary structure 






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   690..... ....700.........710.........720..... .... 730........
Predicted Secondary structure 

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Query Sequence  HSSRFA. . . . . . GMWLDSLDQYMFESWRRIDEAQLIIEKLFS. . . ENAI. . EPPPEKRPP
Query Conservation 

  

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Template Conservation 
                                             
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Template Sequence  HSESSEWLKNQVITIQDRAASQYIRSGYALATVAKLFEMTHKQQAAGKQIDQK. . . . . . .
Template Known Secondary structure 

S
TT



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Template Predicted Secondary structure 









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   739740.........750.........760.........770.........780.........790........
Predicted Secondary structure 
















































Query Sequence  FPLSDLIIKVLGAEKLGAEMYRLFKQTNGHLPVIGPILGAYSIFTQNEGNPGGIEREYAE
Query Conservation   
  
                  
       
                   
 

     
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Template Conservation  ................................................           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MYDQAKFYYEEG
Template Known Secondary structure  ................................................
Template Predicted Secondary structure  ................................................
   799800.........810.........820.........830.........840....
Predicted Secondary structure 





Query Sequence  MWFWSHLQGYKGAAHAQPDISWWWGTAQGVGNLTRIRDEAEKLRRL
Query Conservation 

     
   

 
  



 
 
       
  
   
  


 
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Template Conservation                 

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Template Sequence  FYRNLFFGAENSIGFHNPTEAM. . . . RILGDATMYAGKADGLLRQA
Template Known Secondary structure  STTTTTTS....
Template Predicted Secondary structure 








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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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