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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.56%DateWed Nov 27 10:14:46 GMT 2024
Rank123Aligned Residues237
% Identity17%Templatec8bcxD_
PDB info PDB header: oxidoreductaseChain: D: PDB Molecule: nitrite reductase (cytochrome; ammonia-forming); PDBTitle: crystal structure of nrfa-1 from geobacter metallireducens
PDB Entry: PDBe RCSB PDBj
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490.........500.........510.........520.........530
Predicted Secondary structure 



















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Query Sequence  TVDNSCGACHPKQAAEFIKGRDHGRPNHPQSWEGNVSTPWYAEYYRRGEGYSM. . . . . . .
Query Conservation       
  

  
  
                      
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Template Conservation               
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Template Sequence  VDPAVWGKAYPTEYEMWKKTKRGFDADH. VTYDKLSEFPYMALLFNGWGFGIAYNEPRGH
Template Known Secondary structure 

TTT
S
SS


TTS.STTTT








S
Template Predicted Secondary structure 









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   531........ 540.
Predicted Secondary structure  ..................




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Query Sequence  . . . . . . . . . . . . . . . . . . VGCDQCHQN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MS.
Query Conservation  .................. 

  



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Alig confidence  ..................








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Template Conservation                      
  


          
                       
Template Sequence  ANMVRDQLEIDSARLKSGGVCLTCKTPYAPKLEKEMGIDYFKTPFKDVLAKIPEKHKTLG
Template Known Secondary structure  SB


T
TTGGGTTT
TTTTS
TTS
GGGTTB
Template Predicted Secondary structure 



































   542.......550...... ...560.........
Predicted Secondary structure  .











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Query Sequence  . SCDDCHSRHRFSAAE. . . . . . . . . . . . . . . . . . . . . . . ARRPEACSICHMG. . . . . . . .
Query Conservation  . 
 





 

  
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Template Conservation 
 
  

                                      
  

          
Template Sequence  VACIDCHDNKDMSLRISRGFTLGEALKKLGVDQAKLSRQEMRSLVCAQCHVTYNIPKDAD
Template Known Secondary structure  S
GGGTB
TTT

B








TT

GGG

TGGGTSS

B

B
TT
Template Predicted Secondary structure 










































   570......... 580.
Predicted Secondary structure  ...............................................




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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDHPDWESYS. RS
Query Conservation  ...............................................




 


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Alig confidence  ...............................................









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Template Conservation              
                                    
          
Template Sequence  KKSIGVYFPWQGSKMGNISVENIIKQIRSDASVGEWTQTVTGFKLGFIRHPEYELFSNNS
Template Known Secondary structure  S
B


B


TT
BTTB


GGG


TTT







TTT
Template Predicted Secondary structure 












































   582.......590.........600.........610.........620..... ....630.......
Predicted Secondary structure 
































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Query Sequence  KWGVIYETTKERWNWDKNLAEVIPGEDYLAPTCQYCHMYVGNNK. . . . WEMNVETKGIWR
Query Conservation 


 

       
       
  
 

 








  
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Alig confidence 




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Template Conservation   
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Template Sequence  VHWKA. . . . . . . . . . . . . . . . . . . . . . . . GAACTDCHMPYTRVGAFKVSDHRVMSPLKN.
Template Known Secondary structure  T........................T

S
TT

S


TTTT.
Template Predicted Secondary structure 




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.
   638.640.........650.........660.........670.........680.........690..
Predicted Secondary structure 




































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Query Sequence  MGVIPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSAESQEKRRKWVELCSKCHSS. . . . .
Query Conservation                    
                 
    
  
  

  


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Alig confidence  ............................................










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Template Conservation  ............................................    
  

       
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DMKACIQCHTEKPEWL
Template Known Secondary structure  ............................................TTTTGGGT

S
Template Predicted Secondary structure  ............................................







   693......700.........710.........720...... ...730.........740........
Predicted Secondary structure  .
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Query Sequence  . RFAGMWLDSLDQYMFESWRRIDEAQLIIEKLFSE. . . NAIEPPPEKRPPFPLSDLIIKV
Query Conservation  . 

       
  
 
      

   
  
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Template Conservation                                 
      
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Template Sequence  RDQVIAIQDRTVSLMLRSGYATATVAKLFEKAHAAQAQGK. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT.....................
Template Predicted Secondary structure 





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   749750.........760.........770.........780.........790.. .......800......
Predicted Secondary structure 









































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Query Sequence  LGAEKLGAEMYRLFKQTNGHLPVIGPILGAYSIFTQNEGNPGGI. . EREYAEMWFWSHLQ
Query Conservation               
       
                   
 
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Alig confidence  ...........................................
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Template Conservation  ...........................................                
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QIDKALYDRAKDLYEEA
Template Known Secondary structure  .............................................
Template Predicted Secondary structure  ...........................................


   807..810.........820.........830.........840.......
Predicted Secondary structure 







Query Sequence  GYKGAAHAQPDISWWWGTAQGVGNLTRIRDEAEKLRRLKSG
Query Conservation     

 
  



 
 
       
  
   
  


   
Alig confidence 








































Template Conservation                 

       
                
Template Sequence  FYRCVFIGAENSVGFHNPTEAMRVLGDATAFATKAEALLRQ
Template Known Secondary structure  T
TTTTTTS
Template Predicted Secondary structure 








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No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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