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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.61%DateWed Nov 27 10:14:46 GMT 2024
Rank118Aligned Residues239
% Identity18%Templatec6p73A_
PDB info PDB header: oxidoreductaseChain: A: PDB Molecule: cytochrome c-552; PDBTitle: cytochrome-c-nitrite reductase
PDB Entry: PDBe RCSB PDBj
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490.........500 .........510
Predicted Secondary structure 



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Query Sequence  TVDNSCGACHPKQAAEFIKGRDH. . . . . . . . . . . . . . . . . . . . . . . . . . . GRPNHPQSWE
Query Conservation       
  

  
  
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Template Conservation                     
                                 
      
Template Sequence  PRNEVYKDKFKNQYNSWHDTAKSEELVDALEQDPNMVILWAGYAFAKDYKAPRGHMYAVT
Template Known Secondary structure 

TTTTTTTSGGGG




B
TTTTSGGGT

B



GGG
Template Predicted Secondary structure 
























   511........520.........530.........540. .
Predicted Secondary structure 

















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Query Sequence  GNVSTPWYAEYYRRGEGYSMVGCDQCHQNMS. . . . . . . . . . . . . . . . . . . . . . . . . . . . S
Query Conservation       
               

  



 
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Template Conservation                        
  

                               
 
Template Sequence  DVRNTLRTGAPKNAEDGPLPMACWSCKSPDVPRLIEEQGEDGYFKGKWAKGGPEVTNTIG
Template Known Secondary structure  SGGG


SSTT
SSSBGGGGTTS
TSSBGGGGTTT

S
S
Template Predicted Secondary structure 










































   543......550........ .560........ . 570.
Predicted Secondary structure 












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Query Sequence  CDDCHSRHRFSAAEAR. . . . . . . . . . . . . . . . . . . . . . RPEACSICHM. . . . . G. PD. . .
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Template Conservation 
  

                                     
  

             
Template Sequence  CSDCHEKGSPKLRISRPYVDRALDAIGTPFSKASKQDKESMVCAQCHVEYYFEKKEDKKG
Template Known Secondary structure  BSTTSS
B



TT

GGG

TTTSS



SGGGTT
Template Predicted Secondary structure 
































   572.......580.........590.
Predicted Secondary structure  ........................................








Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HPDWESYSRSKWGVIYETTK
Query Conservation  ........................................


 


  



 

    
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Template Conservation          
                   
           
          
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Template Sequence  FVKFPWDMGVTVDQMEVYYDGIEFSDWTHALSKTPMLKAQHPEYETWKMGIHGKN. . . . .
Template Known Secondary structure 



TT
SSTT

S
TTT







TTST.....
Template Predicted Secondary structure 










































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   592.......600.........610.........620. ........630.........640......
Predicted Secondary structure 























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Query Sequence  ERWNWDKNLAEVIPGEDYLAPTCQYCHMYV. . . . . GNNKWEMNVETKGIWRMGVIPPKEV
Query Conservation     
       
  
 

 








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Template Conservation  ...................   
  



            
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Template Sequence  . . . . . . . . . . . . . . . . . . . NVSCVDCHMPKVTSPEGKKFTDHKVGNPF. . . . . . . . . . . .
Template Known Secondary structure  ...................T

S

TTS




S
GG............
Template Predicted Secondary structure  ...................


























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   647..650.........660.........670.........680.........690.. .......700
Predicted Secondary structure 



























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Query Sequence  EFKSGLKDFPYGIKIPPMDKKLEIYSAESQEKRRKWVELCSKCHSS. . . . . . RFAGMWLD
Query Conservation           
                 
    
  
  

  


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Template Conservation  .................................      
  

                
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DRFEETCATCHSQTKEFLVGVTNERKA
Template Known Secondary structure  .................................GGTTTTGGGT

S
Template Predicted Secondary structure  .................................






   701........710.........720.........730.........740.........750.........760
Predicted Secondary structure 































Query Sequence  SLDQYMFESWRRIDEAQLIIEKLFSENAIEPPPEKRPPFPLSDLIIKVLGAEKLGAEMYR
Query Conservation    
  
 
      

   
  
   


          
  
                 
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Template Conservation                                 .............................
Template Sequence  KVKEMKLKAEEQLVKAHFEAAKAWELGATEA. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT

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Template Predicted Secondary structure 



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   761........770.........780.........790.........800.........810.........820
Predicted Secondary structure 

































Query Sequence  LFKQTNGHLPVIGPILGAYSIFTQNEGNPGGIEREYAEMWFWSHLQGYKGAAHAQPDISW
Query Conservation   
       
                   
 

     

     
   

 
  



 
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Template Conservation  ..........................           
               

     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . EMKPILTDIRHAQWRWDLAIASHGVAAHAPEEAL
Template Known Secondary structure  ..........................SSTT
Template Predicted Secondary structure  ..........................







   821........830.........840.
Predicted Secondary structure 

Query Sequence  WWGTAQGVGNLTRIRDEAEKL
Query Conservation 
 
       
  
   
  
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Template Conservation  .  
                 
Template Sequence  . RVLGTSVNKAADARVKLAQL
Template Known Secondary structure  .
Template Predicted Secondary structure  .
Download:Text version FASTA version

No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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