Return to main results Retrieve Phyre Job Id

Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.50%DateWed Nov 27 10:14:46 GMT 2024
Rank131Aligned Residues180
% Identity18%Templatec2j7aB_
PDB info PDB header: oxidoreductaseChain: B: PDB Molecule: PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha complex from2 desulfovibrio vulgaris
PDB Entry: PDBe RCSB PDBj
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490.........500. ........510
Predicted Secondary structure 




...........................



Query Sequence  TVDNSCGACHPKQAAEFIKGRDHG. . . . . . . . . . . . . . . . . . . . . . . . . . . RPNHPQSWE
Query Conservation       
  

  
  
        ...........................         
Alig confidence 























...........................








Template Conservation               
     
                                
       
Template Sequence  IRNSAFKPEFPKQYASYERNDETTVMTEYKGSVPFNKNDNVNPLPEGYRHAQPYLKNLWL
Template Predicted Secondary structure 


































   511........520 ....... ..530.........
Predicted Secondary structure 

...........





.......







.............
Query Sequence  GNVSTPWYAE. . . . . . . . . . . YYRRGEG. . . . . . . YSMVGCDQCHQN. . . . . . . . . . . . .
Query Conservation       
    ...........       .......    

  



.............
Alig confidence 









...........






.......











.............
Template Conservation 
           
      
                    
  

           
   
Template Sequence  GYPFMYEYREARGHTYAIQDFLHHIDRINRYAEKGGLPATCWNCKTPKMMEWVKESGDGF
Template Predicted Secondary structure 













































   540.........550......... 560
Predicted Secondary structure  .................
















......................
Query Sequence  . . . . . . . . . . . . . . . . . MSSCDDCHSRHRFSAAEARR. . . . . . . . . . . . . . . . . . . . . . P
Query Conservation  ................. 
 
 





 

  



......................
Alig confidence  .................



















......................
Template Conservation                    
 
  

                                   
Template Sequence  WAKDVNEFRDKIDMKDHTIGCATCHDPQTMELRITSVPLTDYLVSQGKDPKKLPRNEMRA
Template Predicted Secondary structure 































   561........ 570.
Predicted Secondary structure 




........

.........................................
Query Sequence  EACSICHMG. . . . . . . . PD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   

  



........

.........................................
Alig confidence 








........

.........................................
Template Conservation    
 


                  
   
                              
Template Sequence  LVCGQCHVEYYFNGPTMGVNKKPVFPWAEGFDPADMYRYYDKHGDLQVKGFEGKFADWTH
Template Predicted Secondary structure 














































   572.......580.........590.........600.........610.........620
Predicted Secondary structure  ...........































Query Sequence  . . . . . . . . . . . HPDWESYSRSKWGVIYETTKERWNWDKNLAEVIPGEDYLAPTCQYCHMY
Query Conservation  ...........


 


  



 

       
       
  
 

 








 
Alig confidence  ...........














........................









Template Conservation     
       
   
    
 
   ........................   
 




Template Sequence  PASKTPMIKAQHPEYETWINGTHGAA. . . . . . . . . . . . . . . . . . . . . . . . GVTCADCHMS
Template Predicted Secondary structure 

























........................









   621.. .. ....630.........640.........650.........660.........670.....
Predicted Secondary structure 


.

....










































Query Sequence  VGN. NK. . . . WEMNVETKGIWRMGVIPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSAES
Query Conservation   
 .  .... 



  
  
                   
                 
 
Alig confidence 


.

....










.......................................
Template Conservation              
        .......................................
Template Sequence  YTRSDDKKKISSHWWTSPMKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Predicted Secondary structure 




















.......................................
   676...680... ......690.........700.........710.........720......
Predicted Secondary structure  .



Query Sequence  QEKRRKWV. ELCSKCHSSRFAGMWLDSLDQYMFESWRRIDEAQLIIEKLFSE
Query Conservation     
  
 . 

  


  

       
  
 
      

   
  
   
Alig confidence  ......

.










































Template Conservation  ......     
  

           
   
                    
Template Sequence  . . . . . . PEMRACRQCHSDKTPDYLKSRVLFTQKRTFDLLLAAQEVSVKAHEA
Template Predicted Secondary structure  ......






Download:Text version FASTA version

No model constructed - rank, confidence too low


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg

Disclaimer

Terms and Conditions