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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence99.48%DateWed Nov 27 10:14:46 GMT 2024
Rank117Aligned Residues242
% Identity18%Templatec3bnjA_
PDB info PDB header: oxidoreductaseChain: A: PDB Molecule: cytochrome c-552; PDBTitle: w. succinogenes nrfa y218f sulfite complex
PDB Entry: PDBe RCSB PDBj
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   478.480.........490.........500.........510.........520.........530..
Predicted Secondary structure 




















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Query Sequence  TVDNSCGACHPKQAAEFIKGRDHGRPNHPQSWEGNVSTPWYAEYYRRGEGYSMVG. . . . .
Query Conservation       
  

  
  
                      
               
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Template Conservation                          .                 
           
     
Template Sequence  AMSEEWARYYPRQFDSWKKTKESD. NITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYAL
Template Known Secondary structure  TSGGGGTTT
GGGG

.


B
TTTTSGGGT

B



GGG
Template Predicted Secondary structure 







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   533......540.
Predicted Secondary structure  .......................





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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . CDQCHQNMS. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  .......................
  



 
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Alig confidence  .......................








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Template Conservation                         
  

           
                   
Template Sequence  QDNINTLRTGAPVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTI
Template Known Secondary structure  SGGG


SSTT
SSSBGGGGTTS
T
TBSBGGGGTTT

S
S
Template Predicted Secondary structure 




































   542.......550.........560. ....... .
Predicted Secondary structure 














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Query Sequence  SCDDCHSRHRFSAAEARRPE. . . . . . . . . . . . . . . . . . . . . . . ACSICHM. . . . . G. . . .
Query Conservation   
 





 

  




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Template Conservation   
  

                                      
  

           
Template Sequence  GCYNCHDDKSAELKSKVPYLDRGLSAAGFKTFAESTHQEKRSLVCAQCHVEFYFKKTEWK
Template Known Secondary structure 
B
TTT

B



TT...TTTS
TTSS

Template Predicted Secondary structure 


































   570 .........580.
Predicted Secondary structure 
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Query Sequence  P. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DHPDWESYSRS
Query Conservation 
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Alig confidence 
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Template Conservation                
   
                               
         
Template Sequence  DDKGVDKTAMVVTLPWSKGISTEQMEAYYDEINFADWTHGISKTPMLKAQHPDWELYKTG
Template Known Secondary structure 
TT




TT
SSTT

S
TTT







TTS
Template Predicted Secondary structure 
















































   582.......590.........600.........610.........620..... ....630.......
Predicted Secondary structure 
































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Query Sequence  KWGVIYETTKERWNWDKNLAEVIPGEDYLAPTCQYCHMYVGNNK. . . . WEMNVETKGIWR
Query Conservation 


 

       
       
  
 

 








  
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Alig confidence 




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Template Conservation   
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Template Sequence  IHGQK. . . . . . . . . . . . . . . . . . . . . . . . GVSCADCHMPYTQEGAVKYSDHKVGNPL. . .
Template Known Secondary structure  T........................T

S
TT



S
GG...
Template Predicted Secondary structure 




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...
   638.640.........650.........660.........670.........680.........690.....
Predicted Secondary structure 




































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Query Sequence  MGVIPPKEVEFKSGLKDFPYGIKIPPMDKKLEIYSAESQEKRRKWVELCSKCHSSRFA. .
Query Conservation                    
                 
    
  
  

  


  

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Alig confidence  ..........................................















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Template Conservation  ..........................................      
  

       
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DNMDKSCMNCHRESEQKL
Template Known Secondary structure  ..........................................GGTTTT

S
Template Predicted Secondary structure  ..........................................








   696...700.........710.........720.........730.........740.........750.
Predicted Secondary structure  ....






















Query Sequence  . . . . GMWLDSLDQYMFESWRRIDEAQLIIEKLFSENAIEPPPEKRPPFPLSDLIIKVLGA
Query Conservation  ....       
  
 
      

   
  
   


          
  
        
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Template Conservation                                     
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Template Sequence  KDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGA. . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
.......................
Template Predicted Secondary structure 


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   752.......760.........770.........780.........790.........800.........810.
Predicted Secondary structure 






































Query Sequence  EKLGAEMYRLFKQTNGHLPVIGPILGAYSIFTQNEGNPGGIEREYAEMWFWSHLQGYKGA
Query Conservation            
       
                   
 

     

     
   

Alig confidence  ........................................



















Template Conservation  ........................................              
     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TDAELKEIRTHIRHAQWRAD
Template Known Secondary structure  ........................................
Template Predicted Secondary structure  ........................................
   812.......820.........830.........840.........850..
Predicted Secondary structure 












Query Sequence  AHAQPDISWWWGTAQGVGNLTRIRDEAEKLRRLKSGSSSGF
Query Conservation   
  



 
 
       
  
   
  


   
     
Alig confidence 








































Template Conservation            

       
                     
Template Sequence  MAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKY
Template Known Secondary structure  SSTTST
Template Predicted Secondary structure 








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No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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