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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence100.00%DateWed Nov 27 10:14:46 GMT 2024
Rank27Aligned Residues259
% Identity25%Templatec3wi9A_
PDB info PDB header: oxidoreductaseChain: A: PDB Molecule: nitrite reductase; PDBTitle: crystal structure of copper nitrite reductase from geobacillus2 kaustophilus
PDB Entry: PDBe RCSB PDBj
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80........
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Query Sequence  IRCLTGKDGAVHLEMEAKPLTIEPRPGVFFDAWGYCLKGDVPTVPGPVIKVREGTKVKIL
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Template Sequence  LKMERVGPHDVHIEMTAQITDIEIDKGKIYKAWTFNGQ. . . . . APGPLVVVNEGDTIHFT
Template Known Secondary structure 
TTTTTTB.....SS


TT
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   8990..... ....100.........110.........120.........130.........140.......
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Query Sequence  FRNKLTV. PASIHPHGVKYTTANVGVNIAGNPASIVAPGDSRIFEWDTAGTPGTWFYHSY
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Template Sequence  LKNMDPVVPHSMDFHAVHASPSKD. . . . . . . . FIDVMPNKSGTFTY. PANKPGVFMYHCG
Template Known Secondary structure 

SS

B

TTS


........S

B
TT
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S


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   148.150.........160.........170..... ....180.........190.........200.....
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Query Sequence  VFERGGEEGLSRGLWGALIVEPVGGDPN. . PPDKEFVVFMHAFNVNGQEYYAFNNKSGDI
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Template Sequence  TKP. . VLQHIANGMHGVIIVKPKNGYPTDKEVDREYVLIQNEWYKYND. MNDFQNGVPSY
Template Known Secondary structure  .SS..TT

TT

TTGGG


STT
.S

S
Template Predicted Secondary structure 


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   206.. .210.........220.........230...... ...240.........250..
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Query Sequence  ELM. . . . . . . . . . . . RGDSSAFPGETWKAKMGDKVRFHLINIT. EEAHTFHTHGHRWLDK
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Template Conservation                 

              
        
                   
Template Sequence  VVFSSKALKPGDPNTNGDTFTLKEKPLLAKVGEKIRLYINNVGPNEVSSFHVVGTVFDDV
Template Known Secondary structure 
SSTT




SBSSS
TT
SS

TT

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   253... ...260.........270.........280.........290.........300.....
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Query Sequence  SCDK. . . . . . . LIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHMMNGMFGIFMVE
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Template Conservation    
                 
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Template Sequence  YLDGNPNNHLQGMQTVMLPASGGAVVEFTVTR. . . PGTYPIVTHQFNHAQKGAVAMLKVT
Template Known Secondary structure  TT
TTSS

TT


S...SSSTT
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   306.
Predicted Secondary structure 

Query Sequence  EG
Query Conservation 
 
Alig confidence 

Template Conservation    
Template Sequence  ET
Template Known Secondary structure 

Template Predicted Secondary structure 

Download:Text version FASTA version

No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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