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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence98.42%DateWed Nov 27 10:14:46 GMT 2024
Rank124Aligned Residues199
% Identity20%Templatec7lq5A_
PDB info PDB header: protein fibrilChain: A: PDB Molecule: cytochrome c; PDBTitle: cryo-em structure of omcz nanowire from geobacter sulfurreducens
PDB Entry: PDBe RCSB PDBj
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   388.390.........400. ........410.........420......... 430.....
Predicted Secondary structure 








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Query Sequence  PPESDAYTNLLVKY. . . RPDQCVECHEETTPGIVAEWKMSNHANP. . . . . KKNPHV. . . .
Query Conservation                ...    

 

   




 

  
 

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Template Conservation                       
  

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Template Sequence  PPVNQFLGIYDTKFPNLTKADCLECHVSDTV. . . . . LVQQHHALINTVTPPASCINTSGT
Template Known Secondary structure  SS




SSS
SS
GGGS
S

TTTS

.....GGGGTSSS...SB

S

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   436...440.........450.........460.........470.........480.......
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Query Sequence  . . . . . . . . SAETQEIEALIGKELNNWRPGTKDGVYCSYCHGSDHEKLFMPTVDNSCGACH
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Template Conservation       
  

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Template Sequence  VPPTLATGCHVMVPDGSG. . . . . . . . GFTFQDFRNCFNCHTQTPHHTSPAAVAKDCKYCH
Template Known Secondary structure  SS

TTS
SB
TT........

SSSSTTTT
S

TTSSSTTTSS

STTT
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   488.490.........500.........510.........520... ......530.........540.
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Query Sequence  PKQAAEFIKGRDHGRPNHPQSWEGNVSTPWYAEYYR. . . RGEGYSMVGCDQCHQNMS. . .
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Template Conservation            
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Template Sequence  GNFIDNPLDGH. . . . . . YIPTYSASSVTPMPSGRSVTATDGNVVIVQGCEACHQAAPNAI
Template Known Secondary structure 
TTS

TTS

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S


SS

BTT

TTS
SBGGGT




S

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   542.......550.........560.........570........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . SCDDCHSRHRFSAAEARRPEACSICHMGPDHPDWESY
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Template Conservation                  
       
  

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Template Sequence  DPKTNTVRPIFSNQDTHHGTGITDCNLCHNTSSN. . . . . VPIRQCEVCHGV. . . . . . . . .
Template Known Secondary structure 

TT
S





TTTTTTTT



S

STT.....
TTTTTTTTS
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Template Predicted Secondary structure 



























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   579580.........590.........600......... 610.........620
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Query Sequence  SRSKWGVIYETTKERWNWDKNLAEVIPGEDY. . LAPTCQYCHMY
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Template Conservation  .                                    
  

  
Template Sequence  . NSLHNIQKDSPNAANLGTVKPGLEDLGWGHIGNNWDCQGCHWS
Template Known Secondary structure  .TS
B


SSSS
SSS

SSS

SSSBSSSSTS
Template Predicted Secondary structure  .





































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No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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