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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence100.00%DateWed Nov 27 10:14:46 GMT 2024
Rank46Aligned Residues260
% Identity22%Templatec2yqbA_
PDB info PDB header: oxidoreductaseChain: A: PDB Molecule: copper-containing nitrite reductase; PDBTitle: structure of p93a variant of three-domain heme-cu nitrite reductase2 from ralstonia pickettii at 1.4 a resolution
PDB Entry: PDBe RCSB PDBj
Resolution1.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.
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Query Sequence  LTGKDGAVHLEMEAKPLTIEPRPGVFFDAWGYCLKGDVPTVPGPVIKVREGTKVKILFRN
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Template Sequence  NRTYPAKVIVELEVVEKEMQISEGVSYTFWTFGGT. . . . . VPGSFIRVRQGDTVEFHLKN
Template Known Secondary structure 

SS

TTSSS.....SS

BTT
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   92.. .....100.........110.........120.........130.........140.........
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Query Sequence  KLT. . VPASIHPHGVKYTTANVGVNIAGNPASIVAPGDSRIFEWDTAGTPGTWFYHSYVF
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Template Conservation                      .......         
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Template Sequence  HPSSKMAHNIDLHGVTGPGG. . . . . . . GAASSFTAPGHESQFTF. KALNEGIYVYHCATA
Template Known Secondary structure 
TT
SS
B

TT

SGGG.......GGGG

B
TT
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S



S
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   150.........160.........170.........180.........190... ......200..
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Query Sequence  ERGGEEGLSRGLWGALIVEPVGGDPNPPDKEFVVFMHAFNVNGQ. . . . . . . EYYAFNNKS
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Template Sequence  . . PVGMHIANGMYGLILVEPPE. GLPKVDHEYYVMQGDFYTAGKYREKGLQPFDMEKAID
Template Known Secondary structure  ..STT

TT.
...
S
BSS.TT

..B
T
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   203......210...... ...220.........230...... ...240.........250......
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Query Sequence  GDIELMRGDSSAFP. . . GETWKAKMGDKVRFHLINIT. EEAHTFHTHGHRWLDKSCDK. .
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Template Conservation          
                
        
                         
Template Sequence  ERPSYVLFNGAEGALTGDKALHAKVGETVRIFVGNGGPNLVSSFHVIGAIFDQVRYEGGT
Template Known Secondary structure  T

STTSTTTTSGGG
TT
SS

T

TT
S
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   257..260.........270.........280.........290.... .....300.........310
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Query Sequence  . . . . LIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHM. MNGMFGIFMVEEGKRV
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Template Conservation                           ... 
                             
Template Sequence  NVQKNVQTTLIPAGGAAVVKFTARV. . . PGSYVLVDHSIFRAFNKGAMAILKIDGAENK
Template Known Secondary structure 

S
TT


S...
SSS

S


T
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No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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