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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence100.00%DateWed Nov 27 10:14:46 GMT 2024
Rank25Aligned Residues261
% Identity25%Templatec1kbvD_
PDB info PDB header: oxidoreductaseChain: D: PDB Molecule: major outer membrane protein pan 1; PDBTitle: nitrite-soaked crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae
PDB Entry: PDBe RCSB PDBj
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90...
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Query Sequence  GKDGAVHLEMEAKPLTIEPRPGVFFDAWGYCLKGDVPTVPGPVIKVREGTKVKILFRNKL
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Template Sequence  DYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGD. . . . . VPGRMIRVREGDTVEVEFSNNP
Template Known Secondary structure 
S

TTTTB.....SS..BTT

T
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   94 .....100.........110.........120.........130.........140.........150.
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Query Sequence  T. . VPASIHPHGVKYTTANVGVNIAGNPASIVAPGDSRIFEWDTAGTPGTWFYHSYVFER
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Template Sequence  SSTVPHNVDFHAAT. . . GQGGG. . . . AAATFTAPGRTSTFSF. KALQPGLYIYHCAVA. .
Template Known Secondary structure  T
SS
B

TT

...SGGGG....TTTT
B
TT
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S


.S..
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   152.......160.........170.........180.........190. ........200....
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Query Sequence  GGEEGLSRGLWGALIVEPVGGDPNPPDKEFVVFMHAFNVN. . . . . . . GQEYYAFNNKSGD
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Template Sequence  PVGMHIANGMYGLILVEPKE. GLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQ
Template Known Secondary structure  STT

TT.




S
BSS.TT

..B
T
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   205....210........ .220.........230...... ...240.........250.....
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Query Sequence  IELMRGDSSAFPGE. . . TWKAKMGDKVRFHLINIT. EEAHTFHTHGHRWLDKSCD. . . . .
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Template Sequence  PEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLI
Template Known Secondary structure 
STTSTTTTSGGG
TTSS

TT

BSGGGSS
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   256...260.........270.........280.........290.... .....300.........310...
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Query Sequence  . KLIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHM. MNGMFGIFMVEEGKRVNAV
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Template Sequence  NENVQSTIVPAGGSAIVEFKVDI. . . PGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM
Template Known Secondary structure 
SBS
TT
S...
SSTSS
S


TTT
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No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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