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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence100.00%DateWed Nov 27 10:14:46 GMT 2024
Rank58Aligned Residues256
% Identity22%Templatec5ocfA_
PDB info PDB header: electron transportChain: A: PDB Molecule: nitrite reductase, copper-containing; PDBTitle: crystal structure of nitric oxide bound to three-domain heme-cu2 nitrite reductase from ralstonia pickettii
PDB Entry: PDBe RCSB PDBj
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90..
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Query Sequence  TGKDGAVHLEMEAKPLTIEPRPGVFFDAWGYCLKGDVPTVPGPVIKVREGTKVKILFRNK
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Template Sequence  RTYPAKVIVELEVVEKEMQISEGVSYTFWTFGGT. . . . . VPGSFIRVRQGDTVEFHLKNH
Template Known Secondary structure 
SS

TTTTB.....SS

BTT

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   93. .....100.........110.........120.........130.........140.........150
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Query Sequence  LT. . VPASIHPHGVKYTTANVGVNIAGNPASIVAPGDSRIFEWDTAGTPGTWFYHSYVFE
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Template Sequence  PSSKMPHNIDLHGVTGPGG. . . . . . . GAASSFTAPGHESQFTF. KALNEGIYVYHCATA.
Template Known Secondary structure  TT
SS
B

TT

SGGG.......GTTT

B
TT
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S



S.
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   151........160.........170.........180.........190... ......200...
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Query Sequence  RGGEEGLSRGLWGALIVEPVGGDPNPPDKEFVVFMHAFNVNGQ. . . . . . . EYYAFNNKSG
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Template Conservation  .        
  
   
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Template Sequence  . PVGMHIANGMYGLILVEPPE. GLPKVDHEYYVMQGDFYTAGKYREKGLQPFDMEKAIDE
Template Known Secondary structure  .STT

TT.
...
S
BSS.TT

..B
TT
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   204.....210...... ...220.........230...... ...240.........250......
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Query Sequence  DIELMRGDSSAFP. . . GETWKAKMGDKVRFHLINIT. EEAHTFHTHGHRWLDKSCDK. . .
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Template Sequence  RPSYVLFNGAEGALTGDKALHAKVGETVRIFVGNGGPNLVSSFHVIGAIFDQVRYEGGTN
Template Known Secondary structure 

STTSTTTTSGGG
TT
SS

T

TT
S
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   257..260.........270.........280.........290.... .....300.......
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Query Sequence  . . . LIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHM. MNGMFGIFMVEEG
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Template Conservation                          ... 
                          
Template Sequence  VQKNVQTTLIPAGGAAVVKFTARV. . . PGSYVLVDHSIFRAFNKGAMAILKIDGA
Template Known Secondary structure 
S
TT


S...
SSS

S
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No model constructed - rank, confidence too low


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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