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Job DescriptionSwiss-Prot_entry_P0DV45_from_UniProt
Confidence100.00%DateWed Nov 27 10:14:46 GMT 2024
Rank93Aligned Residues211
% Identity24%Templatec1sddB_
PDB info PDB header: blood clottingChain: B: PDB Molecule: coagulation factor v; PDBTitle: crystal structure of bovine factor vai
PDB Entry: PDBe RCSB PDBj
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   72.......80.........90.........100.........110.........120.........130.
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Query Sequence  VPGPVIKVREGTKVKILFRNKLTVPASIHPHGVKYTTANVGVNIAGNPASIVAPGDSRIF
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Template Sequence  ILGPVIRAEVDDVIQVRFKNLASRPYSLHAHGLS. . . . . . . . . . . . . . . NAIQPNKTYTY
Template Known Secondary structure  TS


TT



SSS
B

TSS...............S.B.TT


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   132.......140 .........150.........160.........170 .......
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Query Sequence  EWDTAGTPG. . . . . . . . . TWFYHSYVFERGGEEGLSRGLWGALIVEPV. . . . . GGDPNPP
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Template Conservation                       
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Template Sequence  VWHATTRSGPENPGSACRAWAYYSAV. . . NPEKDIHSGLIGPLLICRKGTLDKETNMPVD
Template Known Secondary structure 


TTTS

SSS
S

S...STTT

TTSS
TTS


SS
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   178.180.........190.........200.........210.........220.........230......
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Query Sequence  DKEFVVFMHAFNVNGQEYYAFNNKSGDIELMRGDSSAFPGETWKAKMGDKVRFHLINIT.
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Template Sequence  MREFVLLFMVFDEKKSWYYD. . . . . NSHEFHAINGMIYNLPGLRMYEQEWVRLHLLNLGG
Template Known Secondary structure 

GGGSS
SS.....SS
TTBSS




TT



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   237..240.........250...... ...260.........270.........280.........290....
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Query Sequence  . EEAHTFHTHGHRWLDKSCDK. LIDTIGLNPFDSYVLDFVAGEGVGKGNWAFHCQSQEHM
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Template Conservation                                             ... 
            
Template Sequence  SRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASK. . . PGWWLLDTEVGEIQ
Template Known Secondary structure  TT

TT


SSS
SS
TT

S...S


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   295....300........
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Query Sequence  MNGMFGIFMVEEGK
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Template Conservation                
Template Sequence  RAGMQTPFLIVDRE
Template Known Secondary structure  TTT

TT
Template Predicted Secondary structure 










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No model constructed - rank, confidence too low


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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