Job Description Undefined Confidence 99.85% Date Thu Nov 13 08:26:15 GMT 2025 Rank 415 Aligned Residues 241 % Identity 12% Template c8qd2D_ PDB info PDB header: lyase Chain: D: PDB Molecule: Pigment biosynthesis protein yellowish-green 1 PDBTitle: ayg1p in complex with 1,3-dihydroxynaphthalene PDB Entry: PDBe RCSB PDBj Resolution UNK

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		28	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		P	Q	V	H	Y	R	V	E	Q	V	.	.	.	.	.	.	G	D	V	K	V	F	Y	R	E	A	G	D	.	.	.	.	.	.	P	A	A	P	A	V	L	L	L	H	G	F	A	A	S	S	Y	M	W	R	D	V	I	E	A	L
Query Conservation												.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		Q	P	I	R	E	V	T	V	P	H	T	Y	R	T	G	N	D	G	A	H	I	P	I	Y	I	R	T	P	A	G	A	D	Q	S	N	P	V	P	I	V	L	I	M	T	G	L	D	G	Y	R	P	D	N	S	Q	R	T	H	E	I
Template Known Secondary structure		S										T	T			T	T			S										T	T			T	T	S	.										S	S			G	G	G
Template Predicted Secondary structure
		76	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure				.																																									.	.	.
Query Sequence		A	D	.	G	Y	H	V	I	A	P	D	L	P	A	F	G	Y	T	E	A	P	A	R	G	Q	Y	D	Y	T	F	A	N	L	T	K	T	I	E	R	F	T	D	Q	.	.	.	L	K	L	T	R	Y	A	M	A	V	H	D	Y	G
Query Conservation				.																																									.	.	.
Alig confidence				.																.	.																								.	.	.
Template Conservation																				.	.
Template Sequence		L	A	R	G	W	A	A	V	V	A	E	I	P	G	T	A	D	C	.	.	P	A	D	P	A	D	P	A	S	P	D	R	L	W	D	S	V	L	S	Y	L	D	Q	R	P	E	L	N	T	A	K	M	V	V	W	G	L	S	A	G
Template Known Secondary structure				T	T							.	.	T	T	S	T	T		.	.		S		T	T		T	T															T		T	T												G	G	G
Template Predicted Secondary structure																				.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																								.
Query Sequence		A	P	V	G	W	R	L	A	L	A	H	P	S	R	I	T	A	I	I	S	Q	N	G	N	A	Y	E	E	G	L	S	A	G	W	E	P	I	R	.	K	Y	W	N	D	P	T	A	E	N	R	Q	A	L	S	D	F	P	T	P	A
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		G	Y	Y	A	I	R	A	A	H	T	H	R	D	R	L	L	G	A	I	A	H	G	P	G	C	H	Y	Y	L	D	P	E	W	L	A	K	V	N	D	H	E	Y	P	F	E	I	T	A	A	W	A	T	K	H	G	Y	K	T	V	E
Template Known Secondary structure												T	G	G	G		S						S			S	S	G	G	G						T	T	G	G	G	S	S	S	S	S										T	T		S	S
Template Predicted Secondary structure
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query Sequence		S	I	K	W	Q	Y	V	E	G	V	S	D	T	S	L	V	A	P	D	A	Y	T	L	E	G	A	Q	I	L	R	P	G	M	A	D	I	Q	L	D	L	L	L	D	Y	A	T	N	V	E	Q	Y	P	A	F	Q	A	Y	F	R	E
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	V	A	G	A	Q	K	K	F	S	L	V	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	V	D	Q
Template Known Secondary structure													T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query Sequence		Y	Q	P	P	L	L	A	V	W	G	E	H	D	P	F	F	L	P	P	G	A	E	A	W	K	R	D	I	P	D	A	D	I	R	.	L	Y	D	T	G	H	F	A	L	E	T	H	S	E	V	I	I	P	T	I	R	Q	F	L	D
Query Conservation																																				.
Alig confidence																																				.												.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		P	S	C	R	L	L	L	L	N	G	V	D	D	G	V	V	P	I	E	D	C	L	V	L	F	E	H	G	S	P	K	E	G	R	F	Y	K	G	L	P	H	M	G	Y	P	N	.	.	.	.	S	L	P	V	S	Y	E	W	L	E
Template Known Secondary structure				S								T	T		S	S	S		T					G	G	G	G	S	S	S								T	T			T	T		T	T	T	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.
		310	.	.	.	.
Predicted Secondary structure
Query Sequence		D	H	V	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	L	A	S
Template Known Secondary structure				T
Template Predicted Secondary structure

No model constructed - rank, confidence too low

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
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