171 c6jraA_ Probab=99.96  E-value=1.4e-27  Score=179.35  Aligned_cols=266  Identities=15%  Similarity=0.147  Sum_probs=0.0  Template_Neff=12.692

Q ss_pred             cceeEEEEeCCeEEEEEEccCCCCCEEEEECCCCCCHHHHHHHHHHHhCC-CEEEEECCC
Q Undefined        29 QVHYRVEQVGDVKVFYREAGDPAAPAVLLLHGFAASSYMWRDVIEALADG-YHVIAPDLP   87 (323)
Q Consensus        29 ~~~~r~~~~dG~~i~y~~~G~~~~p~ivllHG~~~~~~~~~~~~~~L~~~-~~Via~D~~   87 (323)
                      .....+...+|.+++|.+.|+  +|+|||+||.+++...|..++..|++. |+|+++|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~g~--~~~vv~~hg~~~~~~~~~~~~~~l~~~~~~v~~~d~~   59 (269)
T c6jraA_           2 RTRSTISTPNGITWYYEQEGT--GPDIVLVPDGLGECQMFDSSVSQIAAQGFRVTTFDMP   59 (269)
T ss_dssp             CEEEEEECTTSCEEEEEEECS--SSEEEEECCTTCCGGGGHHHHHHHHTTTCEEEEE--T
T ss_pred             CCccccccCCCeEEEEecCCC--CCEEEEECCCCCchhHHHHHHHHHHHCCCEEEEECCC


Q ss_pred             CCCCCC-CCCcccccccHHHHHHHHHHHHhhcCCcceeeeeecchhHHHHHHHhhchhhc
Q Undefined        88 AFGYTE-APARGQYDYTFANLTKTIERFTDQLKLTRYAMAVHDYGAPVGWRLALAHPSRI  146 (323)
Q Consensus        88 G~G~S~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~v  146 (323)
                      |+|.|. .+......++.+...+++..++......+.+++|+|.||.++..++..+|+++
T Consensus        60 g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~S~Gg~~a~~~a~~~~~~v  119 (269)
T c6jraA_          60 GMSRSAKAPAETYTEVTAQKLASYVISILDALDIKHATVWGCSSGASTVVALLLGYPDRI  119 (269)
T ss_dssp             TSGGGCCSCGGGTSSCCHHHHHHHHHHHHHHTTCCSEEEEEETHHHHHHHHHHHHCGGGE
T ss_pred             CCCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCcEEEEEEChhHHHHHHHHHhCchhh


Q ss_pred             cEEEEEcCcCCcccccchhhHHHHHhhhhhhhhHHHhhhhcchHHHHHHHHhhccCcccC
Q Undefined       147 TAIISQNGNAYEEGLSAGWEPIRKYWNDPTAENRQALSDFPTPASIKWQYVEGVSDTSLV  206 (323)
Q Consensus       147 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (323)
                      .++++++++.............                   ...................
T Consensus       120 ~~lvl~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  160 (269)
T c6jraA_         120 RNAMCHELPTKLLDHLSNTAVL-------------------EDEEISNILANVMLNDVSG  160 (269)
T ss_dssp             EEEEEESCCCSCCHHHHGGGGS-------------------CHHHHHHHHHHHCCCCCSS
T ss_pred             eEEEEecCCccchhhhhHHHhc-------------------chHHHHHHHHHHhhccccC


Q ss_pred             CHHHHHHHHHhhccccchhhHHHHHHhhhhhhhhhhhhhhhhhcCCcceEEEEeCCCCcC
Q Undefined       207 APDAYTLEGAQILRPGMADIQLDLLLDYATNVEQYPAFQAYFREYQPPLLAVWGEHDPFF  266 (323)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~lii~G~~D~~~  266 (323)
                      ....+........ ..............................+++|+++++|++|..+
T Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~g~~d~~~  219 (269)
T c6jraA_         161 GSEAWQALGVEVH-ARLHKNYPVFARGYPRTIPPSAPVQDVEALRGKPLDWTVGAATPTE  219 (269)
T ss_dssp             CHHHHHTTCHHHH-HHHHHHHHHHHHHSTTTTGGGCTTSCHHHHTTSSEEEEEETTSCHH
T ss_pred             cHHHHHhcchHHH-HHHHHHHHHHhhccccccccCccchhHHhccCCceEEEeCCCCCcc


Q ss_pred             CHHHHHHHHHHCCCCEEEEeCCccCHhHhCHHHHHHHHHHHHHHhhccccc
Q Undefined       267 LPPGAEAWKRDIPDADIRLYDTGHFALETHSEVIIPTIRQFLDDHVSLHRQ  317 (323)
Q Consensus       267 ~~~~~~~~~~~~p~~~~~~~~~gH~~~~e~p~~~~~~i~~FL~~~~~~~~~  317 (323)
                      +........ ..+++++++.++||++++|+|+++++.|.+||++.......
T Consensus       220 ~~~~~~~~~-~~~~~~~~~~~~gH~~~~e~p~~~~~~l~~f~~~~~~~~~~  269 (269)
T c6jraA_         220 SFFDNIVTA-TKAGVNIGLLPGMHFPYVSHPDVFAKYVVETTQKHLWNSSS  269 (269)
T ss_dssp             HHHHHHHHH-HHTTCEEEEESSSSCHHHHSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHh-hcCCCeEEeCCCCCCcchhCHHHHHHHHHHHHHhccccCCC


