Job Description Undefined Confidence 99.70% Date Thu Nov 13 08:26:15 GMT 2025 Rank 254 Aligned Residues 302 % Identity 12% Template c4ci9A_ PDB info PDB header: hydrolase Chain: A: PDB Molecule: LYSOSOMAL PROTECTIVE PROTEIN PDBTitle: crystal structure of cathepsin a, apo-structure PDB Entry: PDBe RCSB PDBj Resolution UNK

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																.											.	.	.	.
Query Sequence		T	V	S	A	S	E	T	R	G	D	H	A	P	G	G	R	A	S	A	A	P	Q	V	H	Y	R	V	E	Q	V	.	G	D	V	K	V	F	Y	R	E	A	.	.	.	.	G	D	P	A	A	P	A	V	L	L	L	H	G	F	A
Query Conservation																																.											.	.	.	.
Alig confidence																																.											.	.	.	.
Template Conservation
Template Sequence		S	R	A	P	D	Q	D	E	I	Q	R	L	P	G	L	A	K	Q	P	S	F	R	Q	Y	S	G	Y	L	K	G	S	G	S	K	H	L	H	Y	W	F	V	E	S	Q	K	D	P	E	N	S	P	V	V	L	W	L	N	G	G	P
Template Known Secondary structure				S		G	G	G	B					T	T		S	S			S	S										S	T	T											S	S		T	T	T	S									T	T
Template Predicted Secondary structure
		63	.	.	.																			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		A	S	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	W	R	D	V	I	E	A	L	A	D	G	Y	H	V	I	A	P	D	L	P	.	A	F	G	Y	T	E	A	P	A	R	G	Q	Y	D	Y	T
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		G	C	S	S	L	D	G	L	L	T	E	H	G	P	F	L	V	Q	P	D	G	V	T	L	E	Y	N	P	Y	S	W	N	L	I	A	N	V	L	Y	L	E	S	P	A	G	V	G	F	S	Y	S	D	D	K	F	Y	A	T	N	D
Template Known Secondary structure		T	B		T							T	T	S	S					T	T	S	S						T	T		G	G	G	S	S								S	T	T	S	T	T				T	T						B
Template Predicted Secondary structure
		104	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																													.	.	.	.
Query Sequence		F	A	N	L	T	K	T	I	E	R	F	T	D	.	.	.	.	.	.	Q	L	K	L	T	R	Y	A	M	A	V	H	D	Y	G	A	P	V	G	W	R	L	A	L	A	H	P	S	.	.	.	.	R	I	T	A	I	I	S	Q	N
Query Conservation															.	.	.	.	.	.																													.	.	.	.
Alig confidence															.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		T	E	V	A	Q	S	N	F	E	A	L	Q	D	F	F	R	L	F	P	E	Y	K	N	N	K	L	F	L	T	G	E	S	Y	A	G	I	Y	I	P	T	L	A	V	L	V	M	Q	D	P	S	M	N	L	Q	G	L	A	V	G	N
Template Known Secondary structure																				G	G	G	T	T	S								T	T														T		T	T	S									S
Template Predicted Secondary structure
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		G	N	A	Y	E	E	G	L	S	A	G	W	E	P	I	R	K	Y	W	N	D	P	T	A	E	N	R	Q	A	L	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	T	P	A	S	I	K	W	Q	Y	V	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		G	L	S	S	Y	E	Q	N	D	N	S	L	V	Y	F	A	Y	Y	H	G	L	L	G	N	R	L	W	S	S	L	Q	T	H	C	C	S	Q	N	K	C	N	F	Y	D	N	K	D	L	E	C	V	T	N	L	Q	E	V	A	R	I
Template Known Secondary structure					B															T	T		S															T	T					S	S
Template Predicted Secondary structure
																												198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	V	S	D	T	S	L	V	A	P	D	A	Y	T	L	E	G	A	Q	I	L	R	P	G	M	A	D	I	Q	L	D	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	N	S	G	L	N	I	Y	N	L	Y	A	P	C	A	G	G	V	P	S	D	P	P	C	T	N	T	T	A	A	S	T	Y	L	N	N	P	Y	V	R	K	A	L	N	I	P	E	Q	L	P	Q	W	D	M	C	N	F	L	V
Template Known Secondary structure				S	S	S			T	T		T	T	S			T	T		S					T	T											T	S							T	T			T	T	S					S	B
Template Predicted Secondary structure
		232	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	Y	A	T	N	V	E	Q	Y	P	.	.	A	F	Q	A	Y	F	R	E	Y	Q	P	P	L	L	A	V	W	G	E	H	D	P	F	F	L	P	P	G	A	E	A	W	K	R	D	I	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	Q	Y	R	R	L	Y	R	S	M	N	S	Q	Y	L	K	L	L	S	S	Q	K	Y	Q	I	L	L	Y	N	G	D	V	D	M	A	C	N	F	M	G	D	E	W	F	V	D	S	L	N	Q	K	M	E	V	Q	R	R	P	W
Template Known Secondary structure						B				S	B	S										T	S										T	T		S	S	S												T			S	S
Template Predicted Secondary structure
																				279	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	A	D	I	R	.	L	Y	D	T	G	H	F	A	L	E	T	H	S	E	V	I	I	P	T	I	R	Q	F	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation
Template Sequence		L	V	K	Y	G	D	S	G	E	Q	I	A	G	F	V	K	E	F	S	H	I	A	F	L	T	I	K	G	A	G	H	M	V	P	T	D	K	P	L	A	A	F	T	M	F	S	R	F	L	N
Template Known Secondary structure						G	G	G												T	T							T	T			S	S																		T
Template Predicted Secondary structure

No model constructed - rank, confidence too low

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