PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ocyB_

Fold library id	PDB Header	Molecule	Title
c2ocyB_	PDB header: endocytosis/exocytosis	Chain: B: PDB Molecule: rab guanine nucleotide exchange factor sec2;	PDBTitle: complex of the guanine exchange factor sec2p and the rab2 gtpase sec4p

Links to external resources
Added to library: Wed Jan 9 14:59:18 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S X A L S T Q L I E S V D K Q S H L E E Q L N K S L K T I A S Q K A A I E N Y N Q L K E D Y N T L K R E L S D R D D E V K R L R E D I A K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N E L R T K A E E E A D K L N K E V E D L T A S L F D E A N N X V A D A R K E K Y A I E I L N K R L T E Q L R E K D T L L D T L T L Q L K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . .

Sequence L K K V X H S L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
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Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	X	A	L	S	T	Q	L	I	E	S	V	D	K	Q	S	H	L	E	E	Q	L	N	K	S	L	K	T	I	A	S	Q	K	A	A	I	E	N	Y	N	Q	L	K	E	D	Y	N	T	L	K	R	E	L	S	D	R	D	D	E	V	K	R	L	R	E	D	I	A	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	E	L	R	T	K	A	E	E	E	A	D	K	L	N	K	E	V	E	D	L	T	A	S	L	F	D	E	A	N	N	X	V	A	D	A	R	K	E	K	Y	A	I	E	I	L	N	K	R	L	T	E	Q	L	R	E	K	D	T	L	L	D	T	L	T	L	Q	L	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.
Sequence	L	K	K	V	X	H	S	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T