Return to main results Retrieve Phyre Job Id

Job DescriptionP29355
Confidence93.32%DateSat Apr 13 13:04:03 BST 2013
Rank258Aligned Residues111
% Identity16%Templatec1m9sA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30..... ....40..... ....50.........60.........70.........80.........90.......
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Query Sequence  RGNTLKVLNKDEDPH. . WYKAELDGNE. GFIPSNYIRMTECNWYLGKITRNDAEVLLKKPTVRDGHFLVRQCESSPGEFS
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Template Sequence  QGKNMRILREAKTPITTWYQFSIGGKVIGWVDTRALNTFYKQSMEKPTRLTRYVSANKA. . . . . . . . . . . . . . . . . . . . .
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TTTTTGGG

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   510.........520.........530.........540.........550.........560........
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  ISVRFQDSVQHFKVLRDQNGKYYLWAVKFNSLNELVAYHRTASVSRTHTILLSDMNVETKFVQALFDFNPQESGELAFKR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GESYYKVPVADNPVKRGTLAKYK
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GGGGGGST
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   569570.........580.........590.
 
   178.180...... ...190...... ...200.........
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Query Sequence  GDVITLINK. . . DDPNWWEGQL. NNRRGIFPSNYVC
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Template Sequence  NQKLIVDCQATIEGQLWYRIRTSSTFIGWTKAANLR
Template Known Secondary structure  T

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SSSGGG
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   592.......600.........610.........620.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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