 |
Job Description | P29355 | Confidence | 83.32% | Date | Sat Apr 13 13:04:03 BST 2013 |
Rank | 293 | Aligned Residues | 85 |
% Identity | 32% | Template | c2lctA_ |
PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:proto-oncogene vav; |
PDBTitle: solution structure of the vav1 sh2 domain complexed with a syk-derived2 doubly phosphorylated peptide
|
Resolution | UNK |
|
 |
  |   |
54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | M | T | E | C | N | W | Y | L | G | K | I | T | R | N | D | A | E | V | L | L | K | K | P | T | V | R | D | G | H | F | L | V | R | Q | C | E | S | S | P | G | E | F | S | I | S | V | R | F | Q | D | S | V | Q | H | F | K | V | L | R | D | Q | N | G | K | Y | Y | L | W | A | V | K | F | N | S | L | N | E | L | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |
|
|   |
|   |
|
|
|   |   |
|
|   |
|
|   |   |   |   | . | . |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|   |   |
|
|
Template Sequence |   |
D | L | S | V | H | L | W | Y | A | G | P | M | E | R | A | G | A | E | S | I | L | A | N | R | S | . |
. |
D | G | T | F | L | V | R | Q | R | V | K | D | A | A | E | F | A | I | S | I | K | Y | N | V | E | V | K | H | I | K | I | M | T | A | E | G | L | Y | R | I | T | E | K | K | A | F | R | G | L | T | E | L | V |
Template Known Secondary structure |   |
| S | T | T | S | S | S |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  | S |
| . | . | T | T | B |  |  |  |  |  |
|
| S | S | S |
| S |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
|  |  |  | T | T |  |  |  | S | S | S | S | S |  |  | S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
665 | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | |
|
690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . |
  |
  |   |
134 | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
A | Y | H | R | T | A | S |
Query Conservation |   |
  |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |
Template Sequence |   |
E | F | Y | Q | Q | N | S |
Template Known Secondary structure |   |
 |  |  | T | T | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
743 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|