Return to main results Retrieve Phyre Job Id

Job DescriptionP29355
Confidence76.88%DateSat Apr 13 13:04:03 BST 2013
Rank306Aligned Residues88
% Identity20%Templatec2izvA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:suppressor of cytokine signaling 4; PDBTitle: crystal structure of socs-4 in complex with elongin-b and2 elongin-c at 2.55a resolution
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80.........90.........100.........110.........120.... ..
Predicted Secondary structure 

















































....

Query SS confidence 









































































. . . .

Query Sequence  NYIRMTECNWYLGKITRNDAEVLLKKPTVRDGHFLVRQCESSPGEFSISVRFQDSVQHFKVLRDQNGKYYLWAV. . . . KF
Query Conservation   

                                     
              
                  ....  
Alig confidence 


























..












































....

Template Conservation   
  
    

 
 


 


 

   ..  
 



 
        


       
 

    
 
 
         
Template Sequence  DLLQINNNPCYWGVMDKYAAEALLEGK. . PEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHS
Template Known Secondary structure  T
TT

TT
..
TT
SSTT
STT
TTS
TT
TTS

B
Template Predicted Secondary structure 













..






















Template SS confidence 















































































   277..280.........290.........300... ......310.........320.........330.........340.........350....
 
   127..130.........140
Predicted Secondary structure 













Query SS confidence 













Query Sequence  NSLNELVAYHRTAS
Query Conservation                
Alig confidence 













Template Conservation   

  

 

    
Template Sequence  PDITGLLEHYKDPS
Template Known Secondary structure  SST

GG
Template Predicted Secondary structure 





Template SS confidence 













   355....360........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D