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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank254Aligned Residues256
% Identity21%Templatec3rgfA_
PDB info PDB header:transferase,transcriptionChain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   259260.........270.........280.. .......290.........300.........310.........320... ......330...
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Query Sequence  RNQLHLKRKLGDGNFGEVWYGKWR. . . GIVEVAIKTMKPGTMSPEAFLQEAQIMKQCDHPNLVKLYAV. . CTREEPFYII
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Template Sequence  RERVEDLFEYEGCKVGHVYKAKRKDGKDDKDYALKQIEGTGISM. SACREIALLRELKHPNVISLQKVFLSHADRKVWLL
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   13......20.........30.........40.........50...... ...60.........70.........80.........90.
 
   334.....340.........350.........360.........370.........380.........390.........400.........410...
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Query Sequence  TEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEE
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Template Sequence  FDYAEHDLWHIIKFHRASKLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARVTFWY
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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   414.....420.........430.........440.........450.........460....... ..470.........480
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Query Sequence  DIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMH. . . . . . . NREVVEQVELGYR. . . . . .
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Template Sequence  . . . . . . . . . . . . . . RAPELLLGARHYTKAIDIWAIGCIFAELLT. SEPIFHCRQNPYHHDQLDRIFNVMGFPADKDWEDI
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   200.........210.........220......... 230.........240.........250.........260....
 
   481........490.........500.........510.........520.........530...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . MPMPRGCPEQIYEEVLLKCWDKTPDRRPTFDTLYHFFDDYFVSTQPNYAPPSA
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Template Sequence  KKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKA. FHLLQKLLTMDPIKRITSEQAMQ. . DPYFLEDPLPTSDVFA
Template Known Secondary structure  GGSTT

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   271........280.........290.........300........ .310.........320.........330. ........340.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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