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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank32Aligned Residues242
% Identity26%Templatec3qa8A_
PDB info PDB header:immune system, signaling proteinChain: A: PDB Molecule:mgc80376 protein; PDBTitle: crystal structure of inhibitor of kappa b kinase beta
Resolution3.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   263......270.........280..... ....290.... .....300.........310.........320.........330 ...
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Query Sequence  HLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKP. . GTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPF. . . . . . YII
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Template Sequence  EMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLA
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B
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S




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   16...20.........30.........40.........50.........60.........70.........80.........90.....
 
   334.....340.........350 .........360.........370.........380.........390.........400.........410.
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Query Sequence  TEYMINGSLLQYLRTDG. . STLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLM
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Template Sequence  MEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQ. RLIHKIIDLGYAKELD
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SS
BSSS
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   96...100.........110.........120.........130.........140.........150........ .160.........170....
 
   412.......420.........430.........440.........450.........460.........470.........480.......
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Query Sequence  EEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRGC. . . .
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Template Sequence  QGELCTEFVGTLQ. . . YLAPELLEQKKYTVTVDYWSFGTLAFECIT. GFRPFLPNWQPVQWHGKVRIVVYDDLTGAVKFS
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T...T
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   175....180....... ..190.........200.........210....... ..220.........230.........240.........250
 
   488.490.........500.........
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Query Sequence  . . . . . . . . . . . . PEQIYEEVLLKCWDKTPDRRPT
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Template Sequence  SVLPTPNHLSGILAGKLERWLQCMLMWHQRTDPQ
Template Known Secondary structure  SSS

S



GGGS
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TT
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   257..260.........270.........280.........290
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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