Return to main results Retrieve Phyre Job Id

Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank34Aligned Residues259
% Identity41%Templatec3dpkA_
PDB info PDB header:transferaseChain: A: PDB Molecule:macrophage colony-stimulating factor 1 receptor; PDBTitle: cfms tyrosine kinase in complex with a pyridopyrimidinone2 inhibitor
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   249250.........260.........270.........280..... ....290.... .....300.........310.. .......320..
Predicted Secondary structure 



















...

..




.



Query SS confidence 




































. . .








. .

















.









Query Sequence  HDTQQNWEIPRNQLHLKRKLGDGNFGEVWYGKWRGIV. . . EVAIKTMKP. . GTMSPEAFLQEAQIMKQC. DHPNLVKLYA
Query Conservation          
          

 
 

 
         ... 



    ..          
   
  
. 
 


   
Alig confidence 




































...








..

















.









Template Conservation          
          

 
 

 

 
          



 
              
   
  
  
 


    
Template Sequence  DPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLG
Template Known Secondary structure 



GGGB

GGG
SSS



TT




TTB

Template Predicted Secondary structure 































Template SS confidence 















































































   565....570.........580.........590.........600.........610.........620.........630.........640....
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  VCTREEPFYIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVA
Query Conservation           

 
    


   
      
          


  
  

     
 


  



          

 
Alig confidence 


























...









































....



Template Conservation           

 
    
 
   
   ...                          
               ....  
 
Template Sequence  ACTHGGPVLVITEYCCYGDLLNFLRRQ. . . LSSRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHV. . . . AKIG
Template Known Secondary structure 
SSSS


TT

...

TT
S

SGGGGGG....
Template Predicted Secondary structure 














...























....



Template SS confidence 















































































   652.......660.........670........ .680.........690.........700.........710.........720 ....
 
   403......410.........420.........430.........440.........450.........460.........470.. .......480.
Predicted Secondary structure 






























.




Query SS confidence 





































































.








Query Sequence  DFGLARKLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVV. EQVELGYRM
Query Conservation 




                    
 


          


 
 

 
 

 
 
  
          .  
      
Alig confidence 














....


















































.








Template Conservation 


            ....         

           





 

 



 
  

           
       
Template Sequence  DFGLARDIMNDSNYI. . . . VRLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQM
Template Known Secondary structure 

TTTS
GGG
TTSB....

B
GGGS




TTS

SSTT

SSTT


Template Predicted Secondary structure 












....































Template SS confidence 















































































   796...800.........810 .........820.........830.........840.........850.........860.........870.
 
   482.......490.........500.........510.........
Predicted Secondary structure 













Query SS confidence 





































Query Sequence  PMPRGCPEQIYEEVLLKCWDKTPDRRPTFDTLYHFFDD
Query Conservation    
          

  
    
  


   
   
  
Alig confidence 









.


























Template Conservation            .  

  

  

  


  


  
  
Template Sequence  AQPAFAPKNI. YSIMQACWALEPTHRPTFQQICSFLQE
Template Known Secondary structure 


TT

.T
SSGGGS


Template Predicted Secondary structure 






.







Template SS confidence 





































   876...880..... ....890.........900.........910..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D