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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank251Aligned Residues249
% Identity23%Templatec3mi9A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMK. . . PGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFYIITE
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Template Sequence  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKGSIYLVFD
Template Known Secondary structure  GG
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   336...340.........350.........360.........370.........380.........390.........400.........410. ...
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Query Sequence  YMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLM. EED
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Template Sequence  FCEHDLAGLLSNVLV. KFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGV. . . . LKLADFGLARAFSLAKN
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Query Sequence  IYEARTGAKFPIKWTAPEAATCGN. FTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRG. . . . . . .
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Template Sequence  SQPNRYNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT. RSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNY
Template Known Secondary structure  SS






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   180.........190.........200.........210.........220... ......230.........240.........250........
 
   487..490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . CPEQIYEEVLLKCWDKTPDRRPTFDTLYH
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Template Sequence  ELYEKLELVKGQKRKVKDRLKAYVRDPYA. LDLIDKLLVLDPAQRIDSDDALN
Template Known Secondary structure  GGGTSS


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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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