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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank197Aligned Residues244
% Identity23%Templatec3h4jB_
PDB info PDB header:transferaseChain: B: PDB Molecule:snf1-like protein kinase ssp2; PDBTitle: crystal structure of pombe ampk kdaid fragment
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMK. . . . PGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFYIIT
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Template Sequence  GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI
Template Known Secondary structure  TTTTTTT

TT
STT


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   32.......40.........50.........60.........70.........80.........90.........100.........110.
 
   335....340.........350.........360.........370.........380.........390.........400.........410....
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Query Sequence  EYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEED
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Template Sequence  EYAGGELFDYIVEKKR. . MTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLN. . . . VKIADFGLSNIMTDGN
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   112.......120....... ..130.........140.........150.........160......... 170.........180.....
 
   415....420.........430.........440.........450.........460.........470.........480.........490....
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Query Sequence  IYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRGCPEQIYEE
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Template Sequence  FLKTSCGSPNY. . AAPEVINGKLYAGPEVDVWSCGIVLYVMLV. GRLPFDDEFIPNLFKKV. NSCVYVMPDFLSPGA. QS
Template Known Secondary structure  TT


TTSTTT..S
GGGS

SGGG
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   186...190...... ...200.........210.........220...... ...230.........240... ......250........ .260
 
   495....500.........510....
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Query Sequence  VLLKCWDKTPDRRPTFDTLY
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Template Sequence  LIRRMIVADPMQRITIQEIR
Template Known Secondary structure  TTS
SSGGGS

T
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   261........270.........280
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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