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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank82Aligned Residues243
% Identity22%Templatec2a1aB_
PDB info PDB header:protein synthesis/transferaseChain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   260.........270.........280. ........290.........300.........310.........320.... ..
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Query Sequence  NQLHLKRKLGDGNFGEVWYGKW. RGIVEVAIKTMKPGTMSPEAFLQEAQIMKQCDHPNLVKLYAVC. . . . . . . . . . . . TR
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Template Sequence  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN. . . EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSRSK
Template Known Secondary structure 
SSSSS



S...GGGGTT


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   265....270.........280.........290.........300.. .......310.........320.........330.........340.
 
   327..330.........340......... 350.........360.........370.........380.........390.........400.....
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Query Sequence  EEPFYIITEYMINGSLLQYLRTD. GSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFG
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Template Sequence  TKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQ. . . . VKIGDFG
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TT
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   359360.........370.........380.........390.........400.........410.........420....... ..430....
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  LARKLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPR
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Template Sequence  LVTSLKNDGKRRSK. . . . GTLRYMSPEQISSQDYGKEVDLYALGLILAELLH. VCDTA. . . . . FETSKFFTDLRDGIISD
Template Known Secondary structure  TSS

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   435....440........ .450.........460.........470.........480.. ..... ..490.........500....
 
   486...490.........500.........510.........520
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Query Sequence  GCPEQIYEEVLLKCWDKTPDRRPTFDTLYHFFDDY
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Template Sequence  IFDKKE. KTLLQKLLSKKPEDRPNTSEILRTLTVW
Template Known Secondary structure  TS
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SSGGGS

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   506...510. ........520.........530.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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