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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank165Aligned Residues250
% Identity23%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   257..260.........270.........280..... ....290.........300.........310.. .......320.........330....
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Query Sequence  IPRNQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKPGTMSPEAFLQEAQIMKQC. DHPNLVKLYAVCTREEPFYIIT
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVI
Template Known Secondary structure 

GGG
SSTTTTGGGT


TT
TTB


SS
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   335....340.........350.........360.........370.........380.........390.........400.........410....
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Query Sequence  EYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEED
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Template Sequence  EYVNGGDLMFHMQRQR. KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGH. . . . IKLTDYGMCKEG. . LR
Template Known Secondary structure 

TT
BS.S

TT
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   323......330........ .340.........350.........360.........370.........380. ........390... ..
 
   415....420.........430.........440.........450.........460....... ..470.........480.........490..
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Query Sequence  IYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMH. . NREVVEQVELGYRMPMPRGCPEQIY
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Template Sequence  PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKA.
Template Known Secondary structure  TT

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GGG

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   396...400.........410.........420.........430........ .440.........450.........460.........470...
 
   493......500........ .510.....
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Query Sequence  EEVLLKCWDKTPDRRP. . . . . . TFDTLYH
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Template Sequence  ASVLKSFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
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TTTSTT
STTT
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   480.........490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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