Return to main results Retrieve Phyre Job Id

Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank246Aligned Residues225
% Identity20%Templatec2jc6C_
PDB info PDB header:transferaseChain: C: PDB Molecule:calcium/calmodulin-dependent protein kinase type 1d; PDBTitle: crystal structure of human calmodulin-dependent protein2 kinase 1d
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   260.........270.........280..... ....290.........300.........310.........320.........330........
Predicted Secondary structure 









.

















Query SS confidence 

























.




















































Query Sequence  NQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKPGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFYIITEYMI
Query Conservation          

 
 

 
         . 



              
   
  
 
 


   
         

 
   
Alig confidence 

























.









....






































Template Conservation    
     

 
 

 
  
    
   



 
   ....     

 

  
 




              
     
Template Sequence  KIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKK. . . . ASIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVS
Template Known Secondary structure 
SS
TTT

TT....




TTB


SS


Template Predicted Secondary structure 










....


















Template SS confidence 















































































   21........30.........40.........50....... ..60.........70.........80.........90......
 
   339340.........350.........360.........370.........380.........390.........400.........410........
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  NGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEEDIYEA
Query Conservation   


   
      
          


  
  

     
 


  



          

 




           
Alig confidence 










.
















































...................
Template Conservation             .                                                 ...................
Template Sequence  GGELFDRIVEK. GFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIM. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
B
.S


TT






GGGSSSSTT

...................
Template Predicted Secondary structure 










.





































...................
Template SS confidence 















































































   103......110... ......120.........130.........140.........150.........160..
 
   419420.........430.........440.........450.........460.........470.........480 .........490.....
Predicted Secondary structure 


























...







Query SS confidence 





























































. . .














Query Sequence  RTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYR. . . MPMPRGCPEQIYEEV
Query Conservation           
 


          


 
 

 
 

 
 
  
            
     ...   
          
Alig confidence  .....

































.





















...










.


Template Conservation  .....        
           



 
    
   .
  

           
                   .  
Template Sequence  . . . . . ISPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC. GYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA. KDF
Template Known Secondary structure  .....


SS
TT



T.SS
S


SSTT




TTTTTTS
.
Template Predicted Secondary structure  .....











.






















.
Template SS confidence 















































































   163......170.........180.........190...... ...200.........210.........220.........230.. ...
 
   496...500.........510.....
Predicted Secondary structure 






Query SS confidence 



















Query Sequence  LLKCWDKTPDRRPTFDTLYH
Query Conservation 
  
    
  


   
  
Alig confidence 



















Template Conservation 
   
  

  
 
  


 
Template Sequence  IRNLMEKDPNKRYTCEQAAR
Template Known Secondary structure  S
SSTTTS

T
Template Predicted Secondary structure 







Template SS confidence 



















   256...260.........270.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D