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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank290Aligned Residues245
% Identity26%Templatec2xs0A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:mitogen-activated protein kinase 8; PDBTitle: linear binding motifs for jnk and for calcineurin antagonistically2 control the nuclear shuttling of nfat4
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKPGTMS. . . PEAFLQEAQIMKQCDHPNLVKLYAVCTR. . . . . . EEP
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Template Sequence  KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD
Template Known Secondary structure  TTTTTTTT
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Query Sequence  FYIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARK
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Template Sequence  VYIVMELMDANLCQVIQ. . . . MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT. . . . LKILDFGLATR
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Query Sequence  LMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVEL. . . . . . . . . . . .
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Template Sequence  Y. . . . . . . . . . . . . . . . . YRAPEVILGMGYKENVDIWSVGCIMGEMIK. GGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK
Template Known Secondary structure  S.................SS
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   190 .........200.........210.........220 .........230.........240.........250.
 
   478.480.........490.........500.........510..... ....520......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GYRMPMPRGCPEQIYEEVLLKCWDKTPDRRPTFDTLYH. . FFDDYFVSTQP
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Template Sequence  LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQA. RDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEA
Template Known Secondary structure  S
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   252.......260.........270.........280.........290.... .....300.........310.........320.........330
 
   527..530.
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Query Sequence  NYAPP
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Template Sequence  EAPPP
Template Known Secondary structure  S



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   331....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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