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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank49Aligned Residues259
% Identity22%Templatec4dn5A_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 14; PDBTitle: crystal structure of nf-kb-inducing kinase (nik)
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  QQNWEIPRNQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKPGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPF
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Template Sequence  DYEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKVRLEVFRA. . . . EELMACAGLTSPRIVPLYGAVREGPWV
Template Known Secondary structure  TTB

BTTT
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   331........340.........350.........360.........370.........380.........390.........400.........410
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Query Sequence  YIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKL
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Template Sequence  NIFMELLEGGSLGQLVKEQG. CLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSH. . . AALCDFGHAVCL
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TT
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SGGG
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Query Sequence  MEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGY. . RMPMPRGCP
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Template Sequence  QIPGTE. . . . . . . . . . THMAPEVVLGRSCDAKVDVWSSCCMMLHMLN. GCHPWTQFFRGPLCLKIASEPPPVREIPPSCA
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   542..... ..550.........560.........570........ .580.........590.........600.........610
 
   489490.........500.........510.........520.........530
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Query Sequence  EQIYEEVLLKCWDKTPDRRPTFDTLYHFFDDYFVSTQPNYAP
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Template Sequence  PLT. AQAIQEGLRKEPIHRVSAAELGGKVNRALQQVGGLKSP
Template Known Secondary structure  .S
SSTTSS

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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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