Return to main results Retrieve Phyre Job Id

Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank133Aligned Residues255
% Identity24%Templatec2r7bA_
PDB info PDB header:signaling protein, transferaseChain: A: PDB Molecule:phosphoinositide-dependent protein kinase 1; PDBTitle: crystal structure of the phosphoinositide-dependent kinase-2 1 (pdk-1)catalytic domain bound to a dibenzonaphthyridine3 inhibitor
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   259260.........270.........280. ........290... ......300.........310.........320.........330...
Predicted Secondary structure 





.




....













Query SS confidence 






















.











. . . .







































Query Sequence  RNQLHLKRKLGDGNFGEVWYGKW. RGIVEVAIKTMK. . . . PGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFYII
Query Conservation           

 
 

 
     .     



   ....           
   
  
 
 


   
         

Alig confidence 






















.











....







































Template Conservation     
     

 
 

 

 
     
  



 
                
  

  
 
  

              
Template Sequence  PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG
Template Known Secondary structure  GGG
SS
TTT

TT
T


TTB


SS
Template Predicted Secondary structure 



































Template SS confidence 















































































   7980.........90.........100.........110.........120.........130.........140.........150........
 
   334.....340.........350.........360.........370.........380.........390.........400.........410...
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  TEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEE
Query Conservation   
    


   
      
          


  
  

     
 


  



          

 




      
Alig confidence 
















.










































....














Template Conservation   
      
        .             
           
 
       
       ....               
Template Sequence  LSYAKNGELLKYIRKIG. SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMH. . . . IQITDFGTAKVLFVG
Template Known Secondary structure 

TT
BSS.S

TT




TTT
TTS
....


TT




Template Predicted Secondary structure 













.


















....














Template SS confidence 















































































   159160.........170..... ....180.........190.........200.........210........ .220.........230...
 
   414.....420.........430.........440.........450.........460.........470.........480.........490...
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  DIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRGCPEQIYE
Query Conservation                
 


          


 
 

 
 

 
 
  
            
        
         
Alig confidence 


...........





























.




















.










.
Template Conservation     ...........    
      
    





  



 
.
  

           
    .       
   . 
Template Sequence  TAQ. . . . . . . . . . . YVSPELLTEKSACKSSDLWALGCIIYQLVA. GLPPFRAGNEYLIFQKIIKLE. YDFPEKFFPKA. R
Template Known Secondary structure 
GG...........G

SS


.SS
S


SST
.



SSS
.
Template Predicted Secondary structure 


...........
















.











.







.
Template SS confidence 















































































   245.. ..250.........260.........270....... ..280.........290........ .300......... 310
 
   494.....500.........510..... ....520.........530..
Predicted Secondary structure 






........









Query SS confidence 





















. . . . . . . .
















Query Sequence  EVLLKCWDKTPDRRPTFDTLYH. . . . . . . . FFDDYFVSTQPNYAPPS
Query Conservation   

  
    
  


   
  ........ 
             
 
Alig confidence 





















........
















Template Conservation 


   
  

  
 
  
 
    
  



  
    
    

 
Template Sequence  DLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPK
Template Known Secondary structure  TTS
SSTTSSTTSGGGTTSGGGTT

GGGGGGS



Template Predicted Secondary structure 























Template SS confidence 














































   311........320.........330.........340.........350.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D