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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank130Aligned Residues252
% Identity27%Templatec4ithB_
PDB info PDB header:transferase/transferase inhibitorChain: B: PDB Molecule:receptor-interacting serine/threonine-protein kinase 1; PDBTitle: crystal structure of rip1 kinase in complex with necrostatin-1 analog
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   267..270... ......280.........290.. .......300.........310.........320.........330........
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Query Sequence  KLGDGNF. . . . . GEVWYGKWRGIVEVAIKTM. . . KPGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFYIITEYMI
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Template Sequence  KMKSSDFLESAELKVSLAFHRTQGLMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYME
Template Known Secondary structure 
GGGB
S

B

TTTS
TT


T

BTTB

TT

T
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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  NGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEEDIYEA
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Template Sequence  KGNLMHVLKAEM. STPLSVKGRIILEIIEGMAYLHGKGVIHKDLKPENILVDNDFH. . . . IKIADLGLASF. KMWSKLNN
Template Known Secondary structure  T
BTSSS.


TT


S

SGGG
TT

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TT
.STT
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   97..100........ .110.........120.........130.........140.........150. ........160.. .......170
 
   419420.........430...... ...440.........450.........460..... ....470.........480..... ....490..
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Query Sequence  RTGAKFPIKWTAPEAATC. . GNFTVKSDVWSYGILLYEIMTKGQVPYPG. MHNREVVEQVELGYRMPMPR. . . GCPEQIY
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Template Sequence  EEHNEGTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFA. NKEPYENAIAEQQLIMAIKSGNRPDVDDITEYCPREI.
Template Known Secondary structure  SSS


GGGTS
GGGTT
TT



.SS
S
TT


TT



GGG

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   171........180.........190.........200.........210. ........220.........230.........240........
 
   493......500.........510.........520......
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Query Sequence  EEVLLKCWDKTPDRRPTFDTLYHFFDDYFVSTQP
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Template Sequence  ISLMKLCWEANPEARPTFPGIEEKFRPFYLSQLE
Template Known Secondary structure  T
SSGGGS

T
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   261........270.........280.........290....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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