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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank219Aligned Residues222
% Identity25%Templatec3a60B_
PDB info PDB header:transferaseChain: B: PDB Molecule:ribosomal protein s6 kinase beta-1; PDBTitle: crystal structure of unphosphorylated p70s6k1 (form i)
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   256...260.........270.........280. ........290.........300.........310.........320.........330.
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Query Sequence  EIPRNQLHLKRKLGDGNFGEVWYGKW. . . . RGIVEVAIKTMKPGTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFY
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Template Sequence  KIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLK. . . . . . . . . . . . . . . . . . KKHPFIVDLIYAFQTGGKLY
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GGG

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   85....90.........100.........110.........120...... ...130.........140......
 
   332.......340.........350.........360.........370.........380.........390.........400.........410.
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Query Sequence  IITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLM
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Template Sequence  LILEYLSGGELFMQLEREG. IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGH. . . . VKLTDFGLCKESC
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TTTTST.


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   170.........180........ .190.........200.........210.........220.........230. ........240....
 
   412.......420.........430.........440.........450.........460.........470.........480.........490.
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Query Sequence  EEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRGCPEQI
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Template Sequence  GTIE. . . . . . . . . . . . YMAPEILMRSGHNRAVDWWSLGALMYDMLT. GAPPFTGENRKKTIDKILK. CKLNLPPYLTQEA
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TTTTSST.SS
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   255... .260.........270.........280........ .290.........300....... ..310.........320
 
   492.......500......... 510.....
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Query Sequence  YEEVLLKCWDKTPDRRPT. . . . . FDTLYH
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Template Sequence  . RDLLKKLLKRNAASRLGAGPGDAGEVQA
Template Known Secondary structure  .S
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TTTSTT
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   321........330.........340........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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