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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank281Aligned Residues254
% Identity23%Templatec2vagA_
PDB info PDB header:transferaseChain: A: PDB Molecule:dual specificity protein kinase clk1; PDBTitle: crystal structure of di-phosphorylated human clk1 in2 complex with a novel substituted indole inhibitor
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  EIPRNQLHLKRKLGDGNFGEVWYGKWRG. . IVEVAIKTMKPGTMSPEAFLQEAQIMKQCDHPNL. . . . . . VKLYAVCTRE
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Template Sequence  DVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH
Template Known Secondary structure 
TTTTTTTTTT
SS
TT
TT
B

T
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   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   328.330.........340.........350.........360.........370.........380.........390.........400.......
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Query Sequence  EPFYIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLA
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Template Sequence  GHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDY. . . . TEAYNKRDE
Template Known Secondary structure  T



BTTT



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   235....240.........250.........260.........270.........280.........290.........300. ........310
 
   408.410.........420... ......430.........440.........450.........460.........470.......
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Query Sequence  RKLMEEDIYEARTGAK. . . . . . . . . FPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVEL.
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Template Sequence  RTLINPDIKVVDFGSATYDDEHHSTLVRHYRAPEVILALGWSQPCDVWSIGCILIEYYL. GFTVFPTHDSKEHLAMMERI
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SS
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S

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S
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   314.....320.........330.........340.........350.........360.........370.. .......380.........390..
 
   478.480.........490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GYRMPMPRGCPEQIYEEVLLKCWDKTPDRRPTFDTLYH
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Template Sequence  LGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERL. FDLIQKMLEYDPAKRITLREALK
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S
GGGTT


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GGGG
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S.T
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TT
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   395....400.........410.........420.........430.........440.........450 .........460.........470...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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