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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank19Aligned Residues275
% Identity36%Templatec3g0eA_
PDB info PDB header:transferaseChain: A: PDB Molecule:mast/stem cell growth factor receptor; PDBTitle: kit kinase domain in complex with sunitinib
Resolution1.60 Å
Model Dimensions (Å)X: Y: Z:

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   245....250.........260.........270.........280. ........290......... 300.........310.. ...
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Query Sequence  PDLSHDTQQNWEIPRNQLHLKRKLGDGNFGEVWYGKW. . . . . . RGIVEVAIKTMKPGTMSP. . EAFLQEAQIMKQC. DHP
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Template Sequence  DPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM
Template Known Secondary structure 
GGGS


GGGB

GGG
SSSSSSTT

TT




T
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   572.......580.........590.........600.........610.........620.........630.........640.........650.
 
   316...320.........330.........340......... 350.........360.........370........
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Query Sequence  NLVKLYAVCTREEPFYIITEYMINGSLLQYLRTD. . . . . . . . . . . . . . . . . GSTLGIQALVDMAAQIANGMMYLEERKLV
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Template Sequence  NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI
Template Known Secondary structure  TB


SSSS


TT
BGGGGS
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BTTB




TT
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   652.......660.........670.........680.........690.........700.........710.........720.........730.
 
   379380.........390.........400.........410.........420.........430.........440.........450........
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Query Sequence  HRDLAARNVLVGDKISGVPVVKVADFGLARKLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTK
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Template Sequence  HRDLAARNILLTHGRI. . . . TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSL
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S

SGGGTTT....


GGG

GGG
TTSTT
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T


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   790.........800..... ....810.........820.........830.........840.........850.........860.....
 
   459460....... ..470.........480.........490.........500.........510.........520....
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Query Sequence  GQVPYPGMH. NREVVEQVELGYRMPMPRGCPEQIYEEVLLKCWDKTPDRRPTFDTLYHFFDDYFVST
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Template Sequence  GSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM. YDIMKTCWDADPLKRPTFKQIVQLIEKQISES
Template Known Secondary structure  T

SSTT


STT





TT

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   866...870.........880.........890......... 900.........910.........920.........930.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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