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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank53Aligned Residues247
% Identity22%Templatec4fijA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: catalytic domain of human pak4
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   258.260.........270.........280..... ....290.... .....300.........310.........320.........330.....
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Query Sequence  PRNQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKP. GTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFYIITE
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Template Sequence  PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME
Template Known Secondary structure  GGGT
SSSTTT

STT
SSGGG


TTB

TT
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   336...340.........350.........360.........370.........380.........390.........400.........410.....
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Query Sequence  YMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLMEEDI
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Template Sequence  FLEGGALTDIVTHTR. . MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGR. . . . VKLSDFGFCAQVSKEVP
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TTS
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SGGG
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   397..400.........410. ........420.........430.........440.........450... ......460.........470
 
   416...420.........430.........440.........450.........460.........470........ .480.........490...
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Query Sequence  YEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELG. . YRMPMPRGCPEQIYE
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Template Sequence  RRKLVGTPY. . . WMAPELISRLPYGPEVDIWSLGIMVIEMVD. GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSL. K
Template Known Secondary structure 
B


S
GG...G

TT

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   471........ 480.........490.........500......... 510.........520.........530.........540.... .
 
   494.....500.........510.....
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Query Sequence  EVLLKCWDKTPDRRPTFDTLYH
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Template Sequence  GFLDRLLVRDPAQRATAAELLK
Template Known Secondary structure  S
SSTTTS

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   547..550.........560........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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