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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank316Aligned Residues238
% Identity25%Templatec3coiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase 13; PDBTitle: crystal structure of p38delta kinase
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   255....260.........270.........280..... ....290.........300. ........310.........320.......
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Query Sequence  WEIPRNQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKPGTMSPEA. . . FLQEAQIMKQCDHPNLVKLYAVCTRE. . .
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Template Sequence  WELP. KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL
Template Known Secondary structure  .TT
SSTTTTSSTTSS


TTB


S
S
SSG
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   1920.. .......30.........40.........50.........60.........70.........80.........90.......
 
   328.330.........340.........350.........360.........370.........380.........390.........400....
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Query Sequence  . . . EPFYIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADF
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Template Sequence  RNFYDFYLVMPFMQTDLQKIMG. . . . LKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCE. . . . LKILDF
Template Known Secondary structure  GG





SGGGTTT....S


TT


SS

GGG
TT

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ST
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   98.100.........110......... 120.........130.........140.........150.........160... ......
 
   405....410.........420.........430.........440.........450.........460.........470.........480....
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Query Sequence  GLARKLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMP
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Template Sequence  GLARHVVTRWYR. . . . . . . . . . . . APEVILSWMHYNQTVDIWSVGCIMAEMLT. GKTLFKGKDYLDQLTQILKVTGVPGT
Template Known Secondary structure  T
TT


SB

S............
S

S


TT.SS
SSBSS

B

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   170.........180. ........190.........200.........210 .........220.........230......
 
   485....490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RGCPEQIYEEVLLKCWDKTPDRRPTFDTLYH
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Template Sequence  EFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQA. ADLLEKMLELDVDKRLTAAQALT
Template Known Secondary structure  TT
S
TS
B
SS

TTTT
TTS
.S
S
TTTS

T
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   245....250.........260.........270.........280. ........290.........300....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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