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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank136Aligned Residues249
% Identity27%Templatec2h6dA_
PDB info PDB header:signaling protein,transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain)
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  IPRNQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKP. . . . GTMSPEAFLQEAQIMKQCDHPNLVKLYAVCTREEPFY
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Template Sequence  VKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFF
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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   332.......340.........350.........360.........370.........380.........390.........400.........410.
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Query Sequence  IITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARKLM
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Template Sequence  MVMEYVSGGELFDYICKHG. RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMN. . . . AKIADFGLSNMM.
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   91........100......... 110.........120.........130.........140.........150.. .......160....
 
   412.......420.........430........ .440.........450.........460.........470.........480.........490
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Query Sequence  EEDIYEARTGAKFPIKWTAPEAATCGN. FTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRGCPEQ
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Template Sequence  . . . . . . . . . . . . . . . SDAAPEVISGRLYAGPEVDIWSCGVILYALLC. GTLPFDDEHVPTLFKKIRG. GVFYIPEYLNRS
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TGGGTTS


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   165....170.........180.........190...... ...200.........210..... ....220.......
 
   491........500.........510.........520.........530.
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Query Sequence  IYEEVLLKCWDKTPDRRPTFDTLYHFFDDYFVSTQPNYAPP
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Template Sequence  V. ATLLMHMLQVDPLKRATIKDIRE. . HEWFKQDLPSYLFP
Template Known Secondary structure  .T
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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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