Return to main results Retrieve Phyre Job Id

Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank10Aligned Residues327
% Identity33%Templatec2j0kB_
PDB info PDB header:transferaseChain: B: PDB Molecule:focal adhesion kinase 1; PDBTitle: crystal structure of a fragment of focal adhesion kinase2 containing the ferm and kinase domains.
Resolution3.0 Å
Model Dimensions (Å)X: Y: Z:

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   180.........190.........200.........210.........220... ......230.........240.........250..
Predicted Secondary structure 























...




























....
Query SS confidence 











































. . .




























. . . .
Query Sequence  DTDDQRNGGTVKHYKIKRLDHDQGYFITTRRTFRSLQELVRYYS. . . DVPDGLCCQLTFPAPRLAPTRPDLSHDTQ. . . .
Query Conservation            
 
  
                
 

 


    ...    
                        ....
Alig confidence 











































...




























....
Template Conservation          
  
 
 
    
 
 
   
   
 
 
 




 

      
               

         
Template Sequence  SNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRPGVRSHTDDYAEIIDEEDTYTMP
Template Known Secondary structure 
SSSSS
SS
SS
SSTT

S

B




S










TTS

Template Predicted Secondary structure 
















































Template SS confidence 















































































   305....310.........320.........330.........340.........350.........360.........370.........380....
 
   253......260.........270.........280..... ....290......... 300.........310.........320....
Predicted Secondary structure  ..















....





..




Query SS confidence  . .
































. . . .













. .
























Query Sequence  . . QNWEIPRNQLHLKRKLGDGNFGEVWYGKWRGIV. . . . EVAIKTMKPGTMSP. . EAFLQEAQIMKQCDHPNLVKLYAVC
Query Conservation  ..    
          

 
 

 
         .... 



         ..     
   
  
 
 


   
  
Alig confidence  ..
































....













..
























Template Conservation        
      
 
 

 
 

 

 
           



  
          
  
  

  
 




 
 
  
Template Sequence  STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI
Template Known Secondary structure 

STTB

GGG

SS



SSS



TTTTSTT


TTB

Template Predicted Secondary structure 


























Template SS confidence 















































































   411........420.........430.........440.........450.........460.........470.........480.........490
 
   325....330.........340.........350.........360.........370.........380.........390.........400....
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  TREEPFYIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADF
Query Conservation         

 
    


   
      
          


  
  

     
 


  



          

 

Alig confidence 


.

































































....





Template Conservation     .   



    


   
      
          


 

 


   


 


  



     .... 

 

Template Sequence  TEN. PVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDC. . . . VKLGDF
Template Known Secondary structure 
SS.S


TT
BTTTT

TTT


S

SGGGTT....


Template Predicted Secondary structure 

.























....


Template SS confidence 















































































   491.. ......500.........510.........520.........530.........540.........550......... 560.....
 
   405....410.........420.........430.........440.........450.........460.........470.........480....
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  GLARKLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMP
Query Conservation 


                    
 


          


 
 

 
 

 
 
  
            
        
Alig confidence 



...............




























































Template Conservation 



...............  
   


 
        







 
 



 
  

       
   
  
 
   
Template Sequence  GLSR. . . . . . . . . . . . . . . LPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMP
Template Known Secondary structure 



...............

GGG





TTS

TTTT

TT





Template Predicted Secondary structure 



...............


























Template SS confidence 















































































   566... 570.........580.........590.........600.........610.........620.........630
 
   485....490.........500.........510.........520.......
Predicted Secondary structure 















Query SS confidence 










































Query Sequence  RGCPEQIYEEVLLKCWDKTPDRRPTFDTLYHFFDDYFVSTQPN
Query Conservation            

  
    
  


   
   
          
Alig confidence 






.


































Template Conservation     
  
.  

  

  

  


   
   
  
      
Template Sequence  PNCPPTL. YSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ
Template Known Secondary structure  TT

.TT
SSGGGS

T
Template Predicted Secondary structure 



.








Template SS confidence 










































   645....650. ........660.........670.........680......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D