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Job DescriptionG5EE56
Confidence100.00%DateFri May 3 21:16:22 BST 2013
Rank268Aligned Residues244
% Identity23%Templatec4b99A_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase 7; PDBTitle: crystal structure of mapk7 (erk5) with inhibitor
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   260.........270.........280..... ....290........ .300.........310.........320. ........
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Query Sequence  NQLHLKRKLGDGNFGEVWYGKWRGIV. EVAIKTMKPGTMS. . . PEAFLQEAQIMKQCDHPNLVKLY. . . . . . AVCTREEP
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Template Sequence  DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS
Template Known Secondary structure  SS
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   53......60.........70.........80.........90.........100.........110.........120.........130..
 
   330.........340.........350.........360.........370.........380.........390.........400.........
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Query Sequence  FYIITEYMINGSLLQYLRTDGSTLGIQALVDMAAQIANGMMYLEERKLVHRDLAARNVLVGDKISGVPVVKVADFGLARK
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Template Sequence  VYVVLDLMESDLHQII. . HSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCE. . . . LKIGDFGMARG
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   133......140........ .150.........160.........170.........180.........190..... ....200......
 
   410.........420.........430.........440.........450.........460.........470.........480....
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Query Sequence  LMEEDIYEARTGAKFPIKWTAPEAATCGNFTVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMP. . . . .
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Template Sequence  LQYFMTEYVATRWY. . . . RAPELMLSLHEYTQAIDLWSVGCIFGEMLA. RRQLFPGKNYVHQLQLIMMVLGTPSPAVIQR
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   207..210.........220 .........230.........240.........250 .........260.........270.........280.
 
   485....490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . RGCPEQIYEEVLLKCWDKTPDRRPTFDTLYH
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Template Sequence  VRAYIQSLPPRQPVPWETVYPGADRQA. LSLLGRMLRFEPSARISAAAALR
Template Known Secondary structure  SS






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   294.....300.........310.........320 .........330.........340...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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