Return to main results Retrieve Phyre Job Id

Job DescriptionO45498
Confidence99.94%DateSat Apr 13 13:01:14 BST 2013
Rank9Aligned Residues110
% Identity23%Templatec2crhA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:vav proto-oncogene; PDBTitle: solution structure of the sh2 domain of human proto-2 oncogene protein vav1
ResolutionUNK
Model Dimensions (Å)X:36.929 Y:36.727 Z:38.238

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  CSDLYDCDWYWGDLDWKWAERLLLLCPIGYFLIRDSRSETHLFTVSYHFQDRVYHSRLSLEDSRRNLGSRQPYVSRDYWN
Query Conservation     
    

 
 


 


 

     







        

      
 
 

    
 
 
          
 
Alig confidence 


































































.....







Template Conservation     
    



 
 
  

 

     
 



 
        


       
  
         .....     
 
Template Sequence  PQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRI. . . . . TEKKAFRG
Template Known Secondary structure  SS
GGGSSSB

S

TTTS
TT

SSTT


TT
TTS.....STT

BSS
Template Predicted Secondary structure 





































.....






Template SS confidence 















































































   20.........30.........40.........50.........60.........70.........80...... ...90....
 
   88.90.........100.........110.........120.........130...
Predicted Secondary structure 






























Query SS confidence 













































Query Sequence  LVEIIERSLEQSLTGQQEMLHYRRGHEAEAARVNLTRPLTKRELLP
Query Conservation 
  


 
   
                      
  

 
     
Alig confidence 












...........





















Template Conservation 
 


  
    
...........      
   
  
       
Template Sequence  LTELVEFYQQNSL. . . . . . . . . . . KDCFKSLDTTLQFPFKEPEKRT
Template Known Secondary structure  TTS
G...........GGT
TT





SS





Template Predicted Secondary structure 


...........


















Template SS confidence 













































   95....100....... ..110.........120.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D