Job Description O45498 Confidence 99.92% Date Sat Apr 13 13:01:14 BST 2013 Rank 12 Aligned Residues 105 % Identity 22% Template c1ka6A_ PDB info PDB header:immune system Chain: A: PDB Molecule:sh2 domain protein 1a; PDBTitle: sap/sh2d1a bound to peptide n-py Resolution UNK Model Dimensions (Å) X: Y: Z:

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.																																			.
Query SS confidence																										.																																			.
Query Sequence		L	Y	D	C	D	W	Y	W	G	D	L	D	W	K	W	A	E	R	L	L	L	L	C	P	.	I	G	Y	F	L	I	R	D	S	R	S	E	T	H	L	F	T	V	S	Y	H	F	Q	D	R	V	Y	H	S	R	L	S	L	E	.	D	S	R	R	N	L	G	S	R	Q	P	Y	V	S	R	D	Y	W	N	L
Query Conservation																										.																																			.
Alig confidence																										.																																			.
Template Conservation
Template Sequence		M	D	A	V	A	V	Y	H	G	K	I	S	R	E	T	G	E	K	L	L	L	A	T	G	L	D	G	S	Y	L	L	R	D	S	E	S	V	P	G	V	Y	C	L	C	V	L	Y	H	G	Y	I	Y	T	Y	R	V	S	Q	T	E	T	G	S	W	S	A	E	T	A	P	G	V	H	K	R	Y	F	R	K	I
Template Known Secondary structure						S	S	B			S																T	T								S	S	S	T	T								S	S	S											T	T	S							S	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	I	E	R	S	L	E	Q	S	L	T	G	Q	Q	E	M	L	H	Y	R	R	G	H	E	A	E	A	A	R	V	N	L	T	R	P	L	T	K	R	E	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	L	I	S	A	F	Q	K	P	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	V	I	P	L	Q	Y	P	V	E	K	K	S	S
Template Known Secondary structure								T	T	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S				S	B			S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.																	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D