Job Description P03949 Confidence 99.39% Date Fri May 3 21:46:51 BST 2013 Rank 413 Aligned Residues 167 % Identity 11% Template c1mv3A_ PDB info PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc Resolution UNK

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	T	G	K	E	I	N	D	N	E	L	F	T	C	E	D	P	V	F	D	Q	P	V	A	S	P	K	S	E	I	S	S	K	L	A	E	E	I	E	R	S	K	S	P	L	I	L	E	V	S	P	R	T	P	D	S	V	Q	M	F	R	P	T	F	D	T	F	R	P	P	N	S	D	S	S	T	F	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	P	S	Q	L	R	K	G	P	P	V	P	P	P	P	K	H	T	P	S	K	E	V	K	Q	E	Q	I	L	S	L	F	E	D	T	F	V	P	E	I	S	V	T	T	P	S	Q	P	A	E	A	S	E	V	A	G	G	T	Q	P	A	A	G	A	Q	E	P	G	E	T	A	A	S	E	A	A	S	S	S
Template Known Secondary structure							S										S																																										S	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.										.	.	.
Query SS confidence																																																																		.	.	.	.										.	.	.
Query Sequence		S	Q	S	R	E	D	L	V	A	C	S	S	M	N	S	V	N	N	V	H	D	M	N	T	V	S	S	S	S	S	S	S	A	P	L	F	V	A	L	Y	D	F	H	G	V	G	E	E	Q	L	S	L	R	K	G	D	Q	V	R	I	L	G	Y	N	.	.	.	.	K	N	N	E	W	C	E	A	R	.	.	.
Query Conservation																																																																		.	.	.	.										.	.	.
Alig confidence																																																																		.	.	.	.										.	.	.
Template Conservation
Template Sequence		L	P	A	V	V	V	E	T	F	P	A	T	V	N	G	T	V	E	G	G	S	G	A	G	R	L	D	L	P	P	G	F	M	F	K	V	Q	A	Q	H	D	Y	T	A	T	D	T	D	E	L	Q	L	K	A	G	D	V	V	L	V	I	P	F	Q	N	P	E	E	Q	D	E	G	W	L	M	G	V	K	E	S
Template Known Secondary structure																											S	S			T	T								S	S		B				S	T	T				B		S	S									S		G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
								158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	Y	S	T	R	K	N	D	A	S	N	Q	R	R	L	G	E	I	G	W	V	P	S	N	F	I
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	W	N	Q	H	K	K	L	E	.	.	.	.	.	.	.	.	.	.	.	.	K	C	R	G	V	F	P	E	N	F	T
Template Known Secondary structure					T	G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	T						S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		459	460	.	.	.	.	.	.	.													.	.	470	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D