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Job DescriptionO01325
Confidence100.00%DateFri May 3 21:21:05 BST 2013
Rank167Aligned Residues252
% Identity23%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   190.........200.........210.........220.........230.........240.........250... ......260........
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Query Sequence  LYHEQINLGKKLGNGEFGEVFQGVLSVGIFTNDVEVAVKTMKGSKVTADERITFLREANLMLKL. NHKYVVRLYGVATQQ
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLK. . . . KTDRIYAMRVVKKELVNIDW. . . VQTEKHVFEQASNHPFLVGLHSCFQTE
Template Known Secondary structure 

GGG
SST....TTTGGGT


...TT
TTB


S
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   239240.........250.........260.... .....270.........280.... .....290.........300.........310.
 
   269270.........280.........290.........300.........310.........320.........330.........340...... .
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Query Sequence  EPIMIVMELCSGGCLKSRIEKKDEQLSDVLKRKYCKQIAKGMRYLEKKQVIHRDLAARNVLLDKSDNCKISDFGLSLF. G
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Template Sequence  SRLFFVIEYVNGGDLMFHMQRQRK. LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL
Template Known Secondary structure  S

TT
BSS.

TT
B




GGG
TTS



TT
B


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   316...320.........330......... 340.........350.........360.........370.........380.........390....
 
   348.350.........360.........370.........380.........390........ .400.........410.........420......
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Query Sequence  KLHKEQKLMKVPIRWLAPETLLKGIYSSKSDVWSFGVVMFEVFSGEYPYAD. VKVLKELRRKVAHENLRLKPPSDMPTDD
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Template Sequence  RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAA
Template Known Secondary structure 
TT

B



S
GGG

TT

B
TSS
SSTTTT








TTS
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   395....400.........410.........420.........430.........440.........450.........460.........470....
 
   427..430.........440. ........
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Query Sequence  AKVMEMCFEPVDNRA. . . . . . TFVQVCNR
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Template Sequence  SVLKSFLNKDPKERLGCHPQTGFADIQGH
Template Known Secondary structure  T
S
TTTSTT
STTTS
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   481........490.........500.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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