Job Description O01325 Confidence 96.95% Date Fri May 3 21:21:05 BST 2013 Rank 429 Aligned Residues 132 % Identity 23% Template c3tdvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia Resolution 2.20 Å

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		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.														.
Query SS confidence																																																										.	.	.														.
Query Sequence		L	G	N	G	E	F	G	E	V	F	Q	G	V	L	S	V	G	I	F	T	N	D	V	E	V	A	V	K	T	M	K	G	S	K	V	T	A	D	E	R	I	T	F	L	R	E	A	N	L	M	L	K	L	N	H	K	.	.	.	Y	V	V	R	L	Y	G	V	A	T	Q	Q	E	.	P	I	M	I	V	M	E
Query Conservation																																																										.	.	.														.
Alig confidence														.	.	.	.	.	.	.	.	.														.	.	.	.																			.	.	.														.
Template Conservation														.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		L	G	E	G	F	R	N	Y	A	I	L	V	.	.	.	.	.	.	.	.	.	N	G	D	W	V	F	R	F	P	K	S	Q	Q	.	.	.	.	G	A	D	E	L	N	K	E	I	Q	L	L	P	L	L	V	G	C	V	K	V	N	I	P	Q	Y	V	Y	I	G	K	R	S	D	G	N	P	F	V	G	Y	R
Template Known Secondary structure						S	S							.	.	.	.	.	.	.	.	.	T	T	T							S	S			.	.	.	.																G	G	G		S	S	B											T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.										.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	C	S	G	G	C	L	K	S	R	I	E	K	K	D	E	Q	L	S	D	V	L	K	R	K	Y	C	K	Q	I	A	K	G	M	R	Y	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		K	V	Q	G	Q	I	L	G	E	D	G	M	A	V	.	.	.	F	P	D	D	A	K	D	R	L	A	L	Q	L	A	E	F	M	N	E	L	S	A	F	P	V	E	T	A	I	S	A	G	V	P	V	T	N	L	K	N	K	I	L	L	L	S	E	A	V	E	D	Q	V	F	P	L	L	D	E	S	L	R	D
Template Known Secondary structure					S										T	.	.	.																							S								T	T			B																		T	G	G	G	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
																				315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.					.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	Q	V	I	H	R	D	L	A	A	R	N	V	L	L	D	K	S	D	N	.	.	.	.	C	K	I	S	D	F	G	L	S	L	F	G	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		Y	L	T	L	R	F	Q	S	Y	M	T	H	P	V	Y	T	R	Y	T	P	R	L	I	H	G	D	L	S	P	D	H	F	L	T	N	L	N	S	R	Q	T	P	L	T	G	I	I	D	F	G	D	A	A	I	S	D
Template Known Secondary structure																										S				G	G	G					T	T		S	S		S								T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D