Job Description O01325 Confidence 98.67% Date Fri May 3 21:21:05 BST 2013 Rank 410 Aligned Residues 77 % Identity 14% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																								.															.	.	.	.	.	.	.
Query SS confidence																						.	.																								.															.	.	.	.	.	.	.
Query Sequence		D	E	P	F	Y	H	G	Y	M	S	R	E	E	S	E	K	L	V	R	S	.	.	Q	G	E	F	L	L	R	K	T	E	L	T	K	R	G	E	V	V	V	L	S	V	F	.	W	D	E	G	V	H	H	L	V	V	E	K	A	N	.	.	.	.	.	.	.	N	G	L	Y	Y	L	K	E	F	C	F	E	N
Query Conservation																						.	.																								.															.	.	.	.	.	.	.
Alig confidence								.														.	.										.	.													.															.	.	.	.	.	.	.
Template Conservation								.																									.	.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	.	.	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D
Template Known Secondary structure				T	T			.												T	T	S		T	T								.	.	S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure								.																									.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		158	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	D	L	V	R	Y	H	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D