Job Description O01325 Confidence 100.00% Date Fri May 3 21:21:05 BST 2013 Rank 64 Aligned Residues 247 % Identity 23% Template c2a1aB_ PDB info PDB header:protein synthesis/transferase Chain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex Resolution 2.80 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		H	E	Q	I	N	L	G	K	K	L	G	N	G	E	F	G	E	V	F	Q	G	V	L	S	V	G	I	F	T	N	D	V	E	V	A	V	K	T	M	K	G	S	K	V	T	A	D	E	R	I	T	F	L	R	E	A	N	L	M	L	K	L	N	H	K	Y	V	V	R	L	Y	G	V	A	T	Q	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																										.	.	.	.																.	.	.	.	.	.																												.	.	.	.
Template Conservation																										.	.	.	.																.	.	.	.	.	.
Template Sequence		G	M	D	F	K	E	I	E	L	I	G	S	G	G	F	G	Q	V	F	K	A	K	H	R	.	.	.	.	I	D	G	K	T	Y	V	I	K	R	V	K	Y	N	N	.	.	.	.	.	.	E	K	A	E	R	E	V	K	A	L	A	K	L	D	H	V	N	I	V	H	Y	N	G	C	W	D	G	F	D	Y	D
Template Known Secondary structure															S	S									S	.	.	.	.	S	S													S	.	.	.	.	.	.	G	G	G	G							T	T				T	T	B
Template Predicted Secondary structure																										.	.	.	.																.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
										268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																								.
Query SS confidence		.	.	.	.	.	.	.	.																								.
Query Sequence		.	.	.	.	.	.	.	.	Q	E	P	I	M	I	V	M	E	L	C	S	G	G	C	L	K	S	R	I	E	K	K	.	D	E	Q	L	S	D	V	L	K	R	K	Y	C	K	Q	I	A	K	G	M	R	Y	L	E	K	K	Q	V	I	H	R	D	L	A	A	R	N	V	L	L	D	K	S	D	N	C	K	I
Query Conservation		.	.	.	.	.	.	.	.																								.
Alig confidence		.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		P	E	T	S	S	R	S	K	T	K	C	L	F	I	Q	M	E	F	C	D	K	G	T	L	E	Q	W	I	E	K	R	R	G	E	K	L	D	K	V	L	A	L	E	L	F	E	Q	I	T	K	G	V	D	Y	I	H	S	K	K	L	I	N	R	D	L	K	P	S	N	I	F	L	V	D	T	K	Q	V	K	I
Template Known Secondary structure		T	T																		T	T		B									T	T	S																								T	T				T	T		S	G	G	G						T	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	F	G	L	S	L	F	G	K	L	H	K	E	Q	K	L	M	K	V	P	I	R	W	L	A	P	E	T	L	L	K	G	I	Y	S	S	K	S	D	V	W	S	F	G	V	V	M	F	E	V	F	S	G	E	Y	P	Y	A	D	V	K	V	L	K	E	L	R	R	K	V	A	H	E	N	L	R	L	K	P
Query Conservation
Alig confidence																							.																																					.	.	.	.	.	.
Template Conservation																							.																																					.	.	.	.	.	.
Template Sequence		G	D	F	G	L	V	T	S	L	K	N	D	G	K	R	R	S	K	G	T	L	.	R	Y	M	S	P	E	Q	I	S	S	Q	D	Y	G	K	E	V	D	L	Y	A	L	G	L	I	L	A	E	L	L	H	V	C	D	T	A	.	.	.	.	.	.	F	E	T	S	K	F	F	T	D	L	R	D	G	I	I	S
Template Known Secondary structure					T	T				S	S			S						S			.	T	T	S						S		S				T																S			S	S		.	.	.	.	.	.												T	T
Template Predicted Secondary structure																							.																																					.	.	.	.	.	.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.							.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	D	M	P	T	D	D	A	K	V	M	E	M	C	F	E	P	V	D	N	R	A	T	F	V	Q	V	C	N	R	Y	K	D	L	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	F	D	K	K	E	K	T	L	L	Q	K	L	L	S	K	K	P	E	D	R	P	N	T	S	E	I	L	R	T	L	T	V	W	K	K
Template Known Secondary structure		T	T	S												T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D