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Job DescriptionQ22146
Confidence100.00%DateSat Apr 13 13:24:31 BST 2013
Rank179Aligned Residues250
% Identity20%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   126...130.........140.........150.........160.........170.........180..... ....190.........200....
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Query Sequence  INHDSIVANKKLGEGAFGDVFIAELDQGGKQEVAVKTMRAEATREARLRFMKEARLMRKY. QHKHVVKLIGVAIHEHPLM
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVR. LKKTDRIYAMRVVKKELVN. . IDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF
Template Known Secondary structure 

GGG
SS.TTTTGGGT
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TT
TTB


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   239240.........250.........260.. .......270.........280. ........290.........300.........310.....
 
   205....210......... 220.........230.........240.........250.........260.........270...... ...280..
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Query Sequence  IVMEYCPNGSLLSHL. KKNKVSLIEKLRFTTEAADGIAYLERSKCIHRDIAARNCLLSAKNELKISDFGMSDN. KDEIKD
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Template Sequence  FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT
Template Known Secondary structure 

TT
BSS

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GGG
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TT

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   320.........330.........340.........350.........360.........370.........380.........390.........
 
   283......290.........300.........310.........320.........330.........340.. .......350.........360.
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Query Sequence  ETLEKVPIKWLAPETMQEKVYTHKTDIWTFGVLVWEIYSDGAEPYPGLTKIQTRAKIVVN. DYRMKMPDGTHPTVADVVT
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Template Sequence  TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVL.
Template Known Secondary structure  B



S
GGG

TT

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   400.........410.........420.........430........ .440.........450.........460.........470.......
 
   362.......370... ......380
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Query Sequence  GTCWQKNPEKRS. . . . . . TMDSIHK
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Template Sequence  KSFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
S
TTTSTT
STTT
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   484.....490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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