Job Description Q22146 Confidence 100.00% Date Sat Apr 13 13:24:31 BST 2013 Rank 261 Aligned Residues 246 % Identity 18% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.
Predicted Secondary structure																											.																																														.	.
Query SS confidence																											.																																														.	.
Query Sequence		N	H	D	S	I	V	A	N	K	K	L	G	E	G	A	F	G	D	V	F	I	A	E	L	D	.	Q	G	G	K	Q	E	V	A	V	K	T	M	R	A	E	A	T	R	E	A	R	L	R	F	M	K	E	A	R	L	M	R	K	Y	Q	H	K	H	V	V	K	L	I	G	V	.	.	A	I	H	E	H	P	L
Query Conservation																											.																																														.	.
Alig confidence																											.																				.	.	.																								.	.
Template Conservation																																															.	.	.
Template Sequence		E	R	E	R	V	E	D	L	F	E	Y	E	G	C	K	V	G	H	V	Y	K	A	K	R	K	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	G	I	S	M	.	.	.	S	A	C	R	E	I	A	L	L	R	E	L	K	H	P	N	V	I	S	L	Q	K	V	F	L	S	H	A	D	R	K	V
Template Known Secondary structure													S	S												S	S	S	S											S	S	S	S				.	.	.															T	T	B										T	T	T	T
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																														.	.	.	.
Query SS confidence																		.	.																																														.	.	.	.
Query Sequence		M	I	V	M	E	Y	C	P	N	G	S	L	L	S	H	L	.	.	K	K	N	K	V	S	L	I	E	K	L	R	F	T	T	E	A	A	D	G	I	A	Y	L	E	R	S	K	C	I	H	R	D	I	A	A	R	N	C	L	L	S	A	K	N	.	.	.	.	E	L	K	I	S	D	F	G	M	S	D	N	K
Query Conservation																		.	.																																														.	.	.	.
Alig confidence																		.	.																																														.	.	.	.
Template Conservation
Template Sequence		W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	H	R	A	S	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I	H	Y	L	H	A	N	W	V	L	H	R	D	L	K	P	A	N	I	L	V	M	G	E	G	P	E	R	G	R	V	K	I	A	D	M	G	F	A	R	V	T
Template Known Secondary structure									S																																					T	T								G	G	G						S	S	T	T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.															.	.	.	.	.	.	.	.	.
Query Sequence		D	E	I	K	D	E	T	L	E	K	V	P	I	K	W	L	A	P	E	T	M	Q	E	K	V	Y	T	H	K	T	D	I	W	T	F	G	V	L	V	W	E	I	Y	S	D	G	A	E	P	Y	P	G	L	T	.	.	.	K	I	Q	T	R	A	K	I	V	V	N	D	Y	R	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.															.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																															.										.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		F	W	Y	.	.	.	.	.	.	.	.	.	.	.	R	A	P	E	L	L	L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F	A	E	L	L	T	.	S	E	P	I	F	H	C	R	Q	N	P	Y	H	H	D	Q	L	D	R	I	F	N	V	M	G	F	P	A	D	K	D	W	E	D	I
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.	.	.							T	T			S																				.	S	S		T	T																								T	T	T		G	G	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		197	.	.												200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
																													346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	M	P	D	G	T	H	P	T	V	A	D	V	V	T	G	T	C	W	Q	K	N	P	E	K	R	S	T	M	D	S	I	H	K	K	L	R	E	F	Y	E	S	K	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																				.	.
Template Conservation																																												.																				.	.
Template Sequence		K	K	M	P	E	H	S	T	L	M	K	D	F	R	R	N	T	Y	T	N	C	S	L	I	K	Y	M	E	K	H	K	V	K	P	D	S	K	A	F	H	L	L	.	Q	K	L	L	T	M	D	P	I	K	R	I	T	S	E	Q	A	M	Q	.	.	D	P	Y	F	L	E	D	P
Template Known Secondary structure		G	G	S	T	T										G	G	G	G	T	T									T	T	T			T	T	S							.				S		S	S	G	G	G	S								T	.	.	S	G	G	G	T	S	S	S
Template Predicted Secondary structure																																												.																				.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D