Job Description Q22146 Confidence 99.44% Date Sat Apr 13 13:24:31 BST 2013 Rank 409 Aligned Residues 79 % Identity 20% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																				.	.																																										.	.	.	.	.
Query SS confidence																				.	.																																										.	.	.	.	.
Query Sequence		A	E	Y	Y	H	G	M	V	P	R	Q	D	A	E	G	F	L	K	.	.	R	E	G	D	F	L	V	R	K	T	E	Q	M	P	G	K	V	V	L	A	M	S	V	R	V	T	D	E	L	C	R	H	F	M	L	N	M	D	P	T	S	.	.	.	.	.	N	K	F	Y	F	E	H	T	H	Q	E	S	T	I
Query Conservation																				.	.																																										.	.	.	.	.
Alig confidence							.													.	.																.	.																									.	.	.	.	.
Template Conservation							.																														.	.
Template Sequence		H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	.	.	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L
Template Known Secondary structure			T	T			.												T	T	S		T	T								S	S		T	T	.	.										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure							.																														.	.
Template SS confidence
		6	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		94	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	L	I	N	W	H	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D